Wall clock time and date at job start Fri Apr 10 2020 18:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00073 * 2 1 4 4 H 1.08996 * 110.64605 * 26.84415 * 3 2 1 5 5 C 1.54928 * 110.72358 * 263.49577 * 3 2 1 6 6 N 1.48527 * 103.22950 * 204.23017 * 5 3 2 7 7 C 1.46908 * 111.00397 * 159.72274 * 6 5 3 8 8 C 1.50693 * 109.47252 * 183.58725 * 7 6 5 9 9 O 1.21293 * 120.00330 * 354.04026 * 8 7 6 10 10 N 1.34779 * 119.99683 * 174.03584 * 8 7 6 11 11 C 1.37098 * 119.99924 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00002 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00283 * 180.02562 * 11 10 8 14 14 N 1.31415 * 120.00234 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99927 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47073 * 89.99924 * 15 13 11 17 17 H 1.48497 * 109.47058 * 209.99896 * 15 13 11 18 18 H 1.48507 * 109.46901 * 330.00025 * 15 13 11 19 19 C 1.48127 * 105.82459 * 39.26659 * 6 5 3 20 20 C 1.53993 * 106.94189 * 334.59072 * 19 6 5 21 21 H 1.08995 * 110.31090 * 120.26735 * 20 19 6 22 22 N 1.46496 * 110.31117 * 242.33798 * 20 19 6 23 23 C 1.34777 * 120.00381 * 272.21285 * 22 20 19 24 24 O 1.21284 * 119.99592 * 359.97438 * 23 22 20 25 25 C 1.50694 * 120.00405 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.47140 * 180.02562 * 25 23 22 27 27 C 1.53007 * 109.46879 * 299.99620 * 25 23 22 28 28 H 1.09002 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47134 * 300.00378 * 1 2 3 30 30 H 1.09004 * 109.46861 * 60.00091 * 1 2 3 31 31 H 1.09001 * 110.66984 * 322.66823 * 5 3 2 32 32 H 1.09000 * 110.67036 * 85.62440 * 5 3 2 33 33 H 1.08999 * 109.46680 * 303.58758 * 7 6 5 34 34 H 1.08997 * 109.47140 * 63.58606 * 7 6 5 35 35 H 0.96997 * 120.00372 * 0.02562 * 10 8 7 36 36 H 0.97003 * 119.99920 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.94701 * 215.29330 * 19 6 5 38 38 H 1.08996 * 109.99741 * 93.92413 * 19 6 5 39 39 H 0.97002 * 120.00109 * 92.20472 * 22 20 19 40 40 H 1.08997 * 109.47443 * 59.99439 * 25 23 22 41 41 H 1.09001 * 109.47324 * 179.97438 * 26 25 23 42 42 H 1.08999 * 109.46977 * 299.99657 * 26 25 23 43 43 H 1.08997 * 109.47488 * 59.99371 * 26 25 23 44 44 H 1.09001 * 109.47068 * 180.02562 * 27 25 23 45 45 H 1.08997 * 109.46935 * 300.00130 * 27 25 23 46 46 H 1.08996 * 109.46743 * 60.00296 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3352 2.0267 0.4606 5 6 2.3832 1.7395 -1.4397 6 7 3.4569 2.7430 -1.2248 7 6 4.2634 2.9197 -2.4400 8 6 5.3932 3.8763 -2.1584 9 8 5.4532 4.4461 -1.0893 10 7 6.3371 4.0986 -3.0944 11 6 7.3652 4.9685 -2.8381 12 1 7.4191 5.4753 -1.8859 13 6 8.3380 5.1981 -3.8032 14 7 9.3233 6.0323 -3.5577 15 14 8.2446 4.3220 -5.4504 16 1 7.4576 5.1441 -6.4043 17 1 9.6161 4.1225 -5.9834 18 1 7.5856 3.0031 -5.2729 19 6 4.2829 2.2188 -0.1125 20 6 3.3767 1.2958 0.7231 21 1 3.7849 0.2855 0.7470 22 7 3.2354 1.8185 2.0843 23 6 4.1304 1.4789 3.0330 24 8 5.0526 0.7401 2.7598 25 6 3.9847 2.0161 4.4333 26 6 5.1224 1.4817 5.3056 27 6 4.0419 3.5448 4.4016 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.7584 0.8913 -2.0123 32 1 1.5261 2.1905 -1.9398 33 1 4.6708 1.9570 -2.7487 34 1 3.6371 3.3214 -3.2364 35 1 6.2890 3.6431 -3.9495 36 1 10.0022 6.1929 -4.2317 37 1 4.6428 3.0428 0.5037 38 1 5.1256 1.6523 -0.5089 39 1 2.4976 2.4092 2.3028 40 1 3.0282 1.6969 4.8473 41 1 5.0173 1.8706 6.3184 42 1 5.0821 0.3927 5.3282 43 1 6.0787 1.8013 4.8915 44 1 3.9369 3.9334 5.4146 45 1 4.9983 3.8640 3.9877 46 1 3.2316 3.9258 3.7801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211859273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:22 Heat of formation + Delta-G solvation = -135.302211 kcal Electronic energy + Delta-G solvation = -27068.702205 eV Core-core repulsion = 23185.522130 eV Total energy + Delta-G solvation = -3883.180076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53084 -40.54069 -39.66391 -37.76094 -36.03911 -35.58033 -35.33715 -33.78173 -31.73719 -29.40142 -28.55669 -27.95492 -27.13120 -25.86856 -24.40803 -22.59147 -22.09677 -21.26474 -20.85467 -20.17614 -18.47382 -18.12022 -17.68882 -17.40940 -16.82522 -16.62135 -16.31879 -16.17175 -15.79868 -15.45244 -15.24952 -15.10587 -14.90881 -14.72714 -14.55145 -14.22822 -13.83534 -13.77554 -13.36279 -13.21999 -13.16861 -13.03836 -12.99658 -12.82621 -12.55493 -12.45174 -12.40627 -12.08322 -12.01726 -12.00287 -11.81635 -11.51505 -10.93349 -10.67593 -10.42066 -10.26922 -10.14809 -9.48689 -8.43344 -6.04294 1.28226 1.33427 1.42371 1.58562 1.92049 2.05302 2.20979 2.41276 2.82268 3.12199 3.18747 3.45308 3.55734 3.70727 3.91510 3.97638 4.03905 4.09412 4.13040 4.28173 4.33653 4.41073 4.47272 4.53242 4.59494 4.65773 4.72416 4.74226 4.82092 4.86983 4.91514 4.92289 4.96190 5.04554 5.30004 5.30162 5.43186 5.49169 5.65552 5.78967 5.94317 6.20809 6.48661 6.56881 6.85637 7.21824 7.36518 7.93350 8.74392 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.003696 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.628109 B = 7574.955973 C = 9260.996725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.095 3.905 4 H 0.107 0.893 5 C 0.018 3.982 6 N -0.499 5.499 7 C 0.043 3.957 8 C 0.448 3.552 9 O -0.605 6.605 10 N -0.591 5.591 11 C -0.328 4.328 12 H 0.054 0.946 13 C -0.015 4.015 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.253 1.253 17 H -0.275 1.275 18 H -0.234 1.234 19 C 0.046 3.954 20 C 0.140 3.860 21 H 0.081 0.919 22 N -0.706 5.706 23 C 0.508 3.492 24 O -0.588 6.588 25 C -0.105 4.105 26 C -0.133 4.133 27 C -0.143 4.143 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.389 0.611 36 H 0.279 0.721 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.416 0.584 40 H 0.133 0.867 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.093 0.907 45 H 0.033 0.967 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.694 -12.487 8.034 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.036 3.964 4 H 0.125 0.875 5 C -0.110 4.110 6 N -0.224 5.224 7 C -0.088 4.088 8 C 0.236 3.764 9 O -0.489 6.489 10 N -0.233 5.233 11 C -0.457 4.457 12 H 0.072 0.928 13 C -0.213 4.213 14 N -0.575 5.575 15 Si 0.785 3.215 16 H -0.177 1.177 17 H -0.200 1.200 18 H -0.158 1.158 19 C -0.083 4.083 20 C 0.034 3.966 21 H 0.099 0.901 22 N -0.358 5.358 23 C 0.296 3.704 24 O -0.468 6.468 25 C -0.126 4.126 26 C -0.191 4.191 27 C -0.201 4.201 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.225 0.775 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.253 0.747 40 H 0.150 0.850 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.112 0.888 45 H 0.053 0.947 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.940 -12.185 8.628 26.538 hybrid contribution 1.015 -0.298 -1.123 1.543 sum -20.925 -12.483 7.505 25.495 Atomic orbital electron populations 1.23069 0.78660 1.04078 1.01496 1.87933 1.22178 1.26439 1.94901 1.23074 0.93002 0.85735 0.94577 0.87550 1.23787 0.95904 0.94190 0.97149 1.64586 1.10849 1.42720 1.04272 1.22124 0.93871 0.98127 0.94689 1.20838 0.84823 0.86134 0.84653 1.90539 1.77890 1.53895 1.26589 1.42021 1.23595 1.41377 1.16317 1.18987 1.03113 1.21130 1.02509 0.92765 1.26112 0.94314 0.97556 1.03331 1.69806 1.13909 1.36517 1.37246 0.85368 0.79239 0.79848 0.77088 1.17709 1.20031 1.15795 1.23067 0.94575 0.96770 0.93933 1.21685 0.95817 0.97063 0.82085 0.90054 1.45896 1.30426 1.50722 1.08797 1.21561 0.80764 0.79467 0.88613 1.90688 1.33928 1.38900 1.83308 1.21364 1.03395 0.97814 0.89986 1.21632 0.96724 1.01047 0.99690 1.21817 1.01991 0.91949 1.04337 0.88526 0.92594 0.92333 0.91944 0.86391 0.90669 0.84950 0.77518 0.91117 0.91616 0.95835 0.74655 0.84973 0.89116 0.92895 0.94557 0.88789 0.94726 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.85 113.37 1.23 1.48 16 2 O -0.40 -7.61 10.44 -148.98 -1.56 -9.16 16 3 C 0.10 1.87 3.27 31.80 0.10 1.98 16 4 H 0.11 1.60 7.42 -2.39 -0.02 1.58 16 5 C 0.02 0.36 6.28 86.65 0.54 0.91 16 6 N -0.50 -15.09 5.12 -886.99 -4.54 -19.64 16 7 C 0.04 1.37 5.30 85.55 0.45 1.82 16 8 C 0.45 20.83 7.39 87.65 0.65 21.48 16 9 O -0.61 -34.14 14.10 -3.07 -0.04 -34.18 16 10 N -0.59 -28.69 5.09 -306.99 -1.56 -30.25 16 11 C -0.33 -19.69 10.16 84.04 0.85 -18.83 16 12 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 13 C -0.01 -0.82 5.50 84.92 0.47 -0.36 16 14 N -0.93 -57.34 13.96 21.66 0.30 -57.04 16 15 Si 0.96 39.62 27.74 68.60 1.90 41.53 16 16 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 17 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.23 -8.22 6.52 99.48 0.65 -7.57 16 19 C 0.05 1.62 5.19 86.40 0.45 2.07 16 20 C 0.14 3.84 3.08 45.87 0.14 3.98 16 21 H 0.08 2.62 7.53 -2.39 -0.02 2.60 16 22 N -0.71 -16.71 4.91 -438.38 -2.15 -18.86 16 23 C 0.51 14.13 7.15 87.65 0.63 14.76 16 24 O -0.59 -22.47 15.66 -3.04 -0.05 -22.52 16 25 C -0.10 -1.96 3.26 -11.54 -0.04 -1.99 16 26 C -0.13 -2.71 8.48 71.98 0.61 -2.10 16 27 C -0.14 -2.48 9.09 71.98 0.65 -1.83 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.46 8.11 -2.39 -0.02 0.44 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.06 1.27 7.95 -2.39 -0.02 1.25 16 32 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 2.08 8.00 -2.39 -0.02 2.07 16 34 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.39 15.66 5.76 -92.71 -0.53 15.13 16 36 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.07 2.85 6.82 -2.39 -0.02 2.83 16 38 H 0.02 0.93 7.72 -2.39 -0.02 0.91 16 39 H 0.42 6.83 7.78 -92.71 -0.72 6.11 16 40 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 43 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 44 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 1.08 7.56 -2.39 -0.02 1.06 16 Total: -1.00 -86.85 374.43 -1.28 -88.14 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.32 Total: 38.63 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 6.74 Total: 23.36 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -7.96 Total: -125.78 kcal Atomic # 8 Polarization: -64.22 SS G_CDS: -1.65 Total: -65.86 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.90 Total: 41.53 kcal Total: -86.85 -1.28 -88.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211859273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.166 kcal (2) G-P(sol) polarization free energy of solvation -86.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds