Wall clock time and date at job start Fri Apr 10 2020 18:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47074 * 2 1 4 4 O 1.21281 * 120.00293 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99688 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99650 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47472 * 34.99463 * 6 5 3 8 8 C 1.53006 * 109.47174 * 274.99338 * 6 5 3 9 9 C 1.50707 * 109.47252 * 154.99729 * 6 5 3 10 10 O 1.21279 * 119.99786 * 359.97438 * 9 6 5 11 11 N 1.34778 * 119.99750 * 179.97438 * 9 6 5 12 12 C 1.46500 * 119.99379 * 179.97438 * 11 9 6 13 13 H 1.08999 * 110.64152 * 31.86309 * 12 11 9 14 14 C 1.54316 * 110.72232 * 268.51936 * 12 11 9 15 15 N 1.47020 * 107.27568 * 219.44595 * 14 12 11 16 16 C 1.36938 * 125.65236 * 178.97773 * 15 14 12 17 17 H 1.07998 * 120.00058 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99997 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99701 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47583 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46831 * 119.99792 * 20 18 16 23 23 H 1.48497 * 109.47398 * 239.99526 * 20 18 16 24 24 C 1.47422 * 108.70191 * 358.94070 * 15 14 12 25 25 C 1.54917 * 104.83074 * 24.12901 * 24 15 14 26 26 H 1.08998 * 111.00524 * 81.06438 * 25 24 15 27 27 O 1.42898 * 111.00398 * 204.87574 * 25 24 15 28 28 C 1.42901 * 114.00403 * 268.54749 * 27 25 24 29 29 H 1.08996 * 109.47520 * 60.00415 * 1 2 3 30 30 H 1.09006 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47071 * 300.00236 * 1 2 3 32 32 H 1.09003 * 109.47120 * 239.99315 * 2 1 3 33 33 H 1.09005 * 109.47109 * 119.99999 * 2 1 3 34 34 H 0.96998 * 120.00596 * 359.97438 * 5 3 2 35 35 H 1.09001 * 109.46990 * 179.97438 * 8 6 5 36 36 H 1.08994 * 109.47313 * 300.00198 * 8 6 5 37 37 H 1.09007 * 109.46594 * 60.00111 * 8 6 5 38 38 H 0.97001 * 120.00319 * 359.97438 * 11 9 6 39 39 H 1.09000 * 109.88340 * 338.86942 * 14 12 11 40 40 H 1.09005 * 109.88355 * 99.87702 * 14 12 11 41 41 H 0.96998 * 119.99446 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.36873 * 265.28987 * 24 15 14 43 43 H 1.09005 * 110.36491 * 142.96394 * 24 15 14 44 44 H 1.09000 * 109.46919 * 300.00196 * 28 27 25 45 45 H 1.08999 * 109.47310 * 59.99456 * 28 27 25 46 46 H 1.08995 * 109.47537 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8457 3.0482 -0.0011 7 1 3.1733 3.6716 0.5883 8 6 3.8968 3.5705 -1.4383 9 6 5.2274 3.0928 0.5990 10 8 5.7523 2.0715 0.9891 11 7 5.8797 4.2678 0.7020 12 6 7.2227 4.3111 1.2858 13 1 7.7637 3.3890 1.0739 14 6 7.1493 4.5688 2.8056 15 7 8.2462 5.4865 3.1463 16 6 8.5162 5.9787 4.3953 17 1 7.8959 5.6959 5.2329 18 6 9.5872 6.8413 4.5847 19 7 10.3435 7.1856 3.5640 20 14 9.9550 7.5134 6.2884 21 1 8.9640 6.9782 7.2563 22 1 11.3212 7.1007 6.6989 23 1 9.8720 8.9958 6.2643 24 6 9.0079 5.7883 1.9207 25 6 8.0093 5.5418 0.7623 26 1 7.3492 6.3985 0.6265 27 8 8.6982 5.2322 -0.4507 28 6 8.9871 6.3723 -1.2624 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.9878 0.9298 -0.0005 35 1 4.2597 4.5984 -1.4387 36 1 4.5692 2.9472 -2.0277 37 1 2.8974 3.5383 -1.8723 38 1 5.4600 5.0846 0.3896 39 1 6.1922 5.0249 3.0585 40 1 7.2668 3.6299 3.3469 41 1 11.0920 7.7881 3.6966 42 1 9.8643 5.1198 1.8320 43 1 9.3358 6.8279 1.9242 44 1 8.0560 6.8670 -1.5386 45 1 9.6153 7.0662 -0.7038 46 1 9.5108 6.0535 -2.1636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212313264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:31 Heat of formation + Delta-G solvation = -92.657990 kcal Electronic energy + Delta-G solvation = -26833.196228 eV Core-core repulsion = 22951.865344 eV Total energy + Delta-G solvation = -3881.330884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52510 -39.43230 -38.18066 -36.00750 -35.12979 -34.24121 -33.12808 -31.96503 -30.63112 -28.78894 -27.16583 -26.15407 -25.46204 -24.50205 -23.41845 -20.83022 -20.62219 -20.40247 -19.90780 -18.08435 -17.21588 -16.76815 -16.51480 -15.96857 -15.84426 -15.45047 -15.06525 -14.77204 -14.42501 -14.31590 -14.10631 -13.78825 -13.67486 -13.27893 -12.92776 -12.82824 -12.62173 -12.42608 -12.29226 -12.01622 -11.93336 -11.82373 -11.49631 -11.42417 -11.34372 -11.06026 -10.87616 -10.85915 -10.20996 -10.09100 -9.95073 -9.89829 -9.84041 -9.34873 -9.16021 -8.76985 -8.74574 -6.95098 -5.74270 -3.17401 2.40890 2.59199 2.73441 3.33498 3.36233 3.41930 3.44298 4.06533 4.41198 4.46617 4.59000 4.78556 4.80854 4.86992 4.94851 5.14072 5.25343 5.37914 5.38099 5.46746 5.51020 5.56223 5.57079 5.62541 5.63782 5.66042 5.79352 5.87626 5.92962 5.94039 6.00798 6.13849 6.16039 6.37092 6.60675 6.79815 7.19646 7.29640 7.47910 7.54374 7.67988 7.73884 8.01470 8.17501 8.23403 9.11437 9.71696 10.33612 11.29693 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.002983 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.591219 B = 9383.270429 C =10502.057422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.515 3.485 4 O -0.544 6.544 5 N -0.713 5.713 6 C 0.124 3.876 7 H 0.114 0.886 8 C -0.158 4.158 9 C 0.512 3.488 10 O -0.537 6.537 11 N -0.708 5.708 12 C 0.137 3.863 13 H 0.105 0.895 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.223 4.223 17 H 0.081 0.919 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.917 3.083 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.140 3.860 25 C 0.054 3.946 26 H 0.067 0.933 27 O -0.381 6.381 28 C 0.035 3.965 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.411 0.589 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.400 0.600 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.253 0.747 42 H 0.027 0.973 43 H 0.113 0.887 44 H 0.034 0.966 45 H 0.047 0.953 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.469 -8.504 -12.482 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.302 3.698 4 O -0.421 6.421 5 N -0.367 5.367 6 C 0.015 3.985 7 H 0.132 0.868 8 C -0.216 4.216 9 C 0.296 3.704 10 O -0.414 6.414 11 N -0.358 5.358 12 C 0.032 3.968 13 H 0.123 0.877 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.351 4.351 17 H 0.099 0.901 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.748 3.252 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.014 3.986 25 C -0.005 4.005 26 H 0.085 0.915 27 O -0.299 6.299 28 C -0.062 4.062 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.234 0.766 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.130 0.870 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.444 -8.636 -12.134 20.063 hybrid contribution 0.421 0.691 0.767 1.115 sum -13.023 -7.945 -11.367 19.024 Atomic orbital electron populations 1.21529 0.92931 1.01593 1.03374 1.21627 0.98627 0.93486 1.04635 1.20820 0.81665 0.92095 0.75266 1.90699 1.55275 1.46518 1.49570 1.45823 1.07550 1.07993 1.75367 1.20769 0.93666 0.85590 0.98477 0.86842 1.22116 1.03465 1.01641 0.94397 1.20488 0.87113 0.84063 0.78692 1.90701 1.68126 1.33461 1.49072 1.45932 1.18128 1.09271 1.62470 1.22177 0.80861 1.00149 0.93596 0.87724 1.21597 0.92758 0.94262 0.91065 1.44307 1.30993 1.52246 1.05257 1.19143 1.10296 1.21368 0.84247 0.90123 1.24811 0.97601 1.00167 0.98005 1.69759 1.20057 1.39028 1.28300 0.85952 0.77888 0.78430 0.82951 1.20437 1.21636 1.21686 1.22337 0.90775 1.04137 0.81367 1.24034 0.95099 0.95151 0.86259 0.91529 1.87837 1.77779 1.31669 1.32653 1.22699 0.99333 0.89439 0.94726 0.92004 0.92059 0.91933 0.88804 0.88653 0.75243 0.90886 0.91656 0.90919 0.76588 0.95192 0.94852 0.93619 0.95528 0.86962 0.94774 0.93383 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.20 37.16 0.34 -0.68 16 2 C -0.14 -1.04 6.42 -27.88 -0.18 -1.22 16 3 C 0.51 5.58 7.79 -10.99 -0.09 5.50 16 4 O -0.54 -7.70 15.64 5.56 0.09 -7.62 16 5 N -0.71 -7.57 4.95 -54.93 -0.27 -7.84 16 6 C 0.12 1.39 2.98 -69.08 -0.21 1.18 16 7 H 0.11 1.32 7.58 -51.93 -0.39 0.93 16 8 C -0.16 -1.46 9.38 37.16 0.35 -1.11 16 9 C 0.51 7.21 7.22 -10.98 -0.08 7.13 16 10 O -0.54 -9.29 15.48 5.56 0.09 -9.21 16 11 N -0.71 -9.96 5.00 -52.03 -0.26 -10.22 16 12 C 0.14 2.47 3.06 -66.10 -0.20 2.27 16 13 H 0.10 2.09 7.55 -51.93 -0.39 1.70 16 14 C 0.13 2.76 6.99 -3.07 -0.02 2.74 16 15 N -0.60 -15.15 3.39 -170.07 -0.58 -15.73 16 16 C -0.22 -6.11 10.27 -15.06 -0.15 -6.26 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.24 10.09 55.49 0.56 -25.68 16 20 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.14 3.32 5.62 -2.53 -0.01 3.30 16 25 C 0.05 1.00 3.12 -24.58 -0.08 0.92 16 26 H 0.07 1.14 7.77 -51.93 -0.40 0.74 16 27 O -0.38 -6.70 10.52 -35.23 -0.37 -7.07 16 28 C 0.03 0.48 10.89 101.05 1.10 1.58 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.41 4.04 7.79 -40.82 -0.32 3.73 16 35 H 0.07 0.58 7.56 -51.93 -0.39 0.19 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.40 4.56 7.98 -40.82 -0.33 4.24 16 39 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.11 2.95 5.88 -51.93 -0.31 2.64 16 44 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -33.20 378.24 -6.95 -40.16 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.56 Total: 5.81 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 0.68 Total: 14.98 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.55 Total: -59.47 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.20 Total: -23.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.20 -6.95 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212313264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.502 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds