Wall clock time and date at job start Fri Apr 10 2020 18:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47205 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00099 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99971 * 180.02562 * 5 4 3 8 8 C 1.47486 * 127.03284 * 0.02562 * 7 5 4 9 9 C 1.54009 * 107.08105 * 154.51863 * 8 7 5 10 10 H 1.09002 * 110.32436 * 120.30314 * 9 8 7 11 11 C 1.52999 * 110.32565 * 242.41383 * 9 8 7 12 12 C 1.54617 * 105.04459 * 1.30709 * 9 8 7 13 13 H 1.09004 * 110.73627 * 263.32650 * 12 9 8 14 14 N 1.46897 * 110.73755 * 140.18599 * 12 9 8 15 15 C 1.46903 * 110.99941 * 154.99507 * 14 12 9 16 16 C 1.50701 * 109.47213 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00103 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99990 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00120 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99923 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00136 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00324 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99936 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47013 * 90.00080 * 23 21 19 25 25 H 1.48502 * 109.47042 * 210.00147 * 23 21 19 26 26 H 1.48500 * 109.47316 * 330.00160 * 23 21 19 27 27 C 1.48121 * 127.03402 * 179.70764 * 7 5 4 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 33 33 H 1.09001 * 109.46918 * 299.99649 * 4 3 2 34 34 H 1.08999 * 109.46857 * 59.99535 * 4 3 2 35 35 H 1.08998 * 109.91390 * 273.87793 * 8 7 5 36 36 H 1.08996 * 109.91461 * 34.96721 * 8 7 5 37 37 H 1.08994 * 109.47305 * 58.54362 * 11 9 8 38 38 H 1.08997 * 109.46875 * 178.54962 * 11 9 8 39 39 H 1.09006 * 109.46737 * 298.54526 * 11 9 8 40 40 H 1.00889 * 111.00197 * 278.94930 * 14 12 9 41 41 H 1.09004 * 109.47582 * 300.00629 * 15 14 12 42 42 H 1.09003 * 109.47184 * 59.99869 * 15 14 12 43 43 H 0.97005 * 120.00035 * 0.02562 * 18 16 15 44 44 H 0.97001 * 120.00457 * 179.97438 * 22 21 19 45 45 H 1.09005 * 110.66181 * 337.77077 * 27 7 5 46 46 H 1.09000 * 110.66226 * 100.88129 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 -0.0012 6 8 2.9611 3.7728 -0.0016 7 7 5.1210 3.2662 -0.0023 8 6 6.2846 2.3600 -0.0036 9 6 7.4575 3.1307 -0.6379 10 1 8.2848 3.2087 0.0675 11 6 7.9179 2.4361 -1.9210 12 6 6.8894 4.5322 -0.9599 13 1 6.5706 4.5896 -2.0007 14 7 7.8797 5.5757 -0.6629 15 6 7.6343 6.7790 -1.4691 16 6 8.6671 7.8251 -1.1373 17 8 9.5236 7.5912 -0.3111 18 7 8.6397 9.0204 -1.7595 19 6 9.5796 9.9719 -1.4582 20 1 10.3422 9.7635 -0.7224 21 6 9.5509 11.2043 -2.0993 22 7 10.4521 12.1161 -1.8108 23 14 8.2314 11.5649 -3.3713 24 1 7.0493 12.1648 -2.7019 25 1 8.7636 12.5150 -4.3810 26 1 7.8322 10.3018 -4.0424 27 6 5.6753 4.6397 -0.0090 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9764 0.8892 34 1 3.8333 0.9766 -0.8908 35 1 6.5359 2.0769 1.0185 36 1 6.0610 1.4694 -0.5909 37 1 7.0844 2.3759 -2.6208 38 1 8.7302 3.0064 -2.3714 39 1 8.2672 1.4309 -1.6847 40 1 7.8889 5.7958 0.3216 41 1 7.6990 6.5268 -2.5275 42 1 6.6401 7.1677 -1.2484 43 1 7.9549 9.2074 -2.4207 44 1 10.4324 12.9764 -2.2586 45 1 4.9439 5.3478 -0.3989 46 1 5.9973 4.9295 0.9912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214084921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:45 Heat of formation + Delta-G solvation = -133.910075 kcal Electronic energy + Delta-G solvation = -25883.086837 eV Core-core repulsion = 21999.967129 eV Total energy + Delta-G solvation = -3883.119708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34944 -40.32182 -39.41054 -38.37132 -36.25411 -35.60096 -33.76859 -33.45536 -32.47157 -30.67894 -28.87671 -27.50210 -27.03675 -25.48158 -23.69088 -23.40375 -21.53144 -21.17178 -20.53261 -20.19441 -18.38592 -17.92572 -17.76475 -17.43117 -16.97908 -16.86082 -16.58903 -16.30207 -15.80634 -15.50023 -15.10452 -14.70719 -14.65224 -14.54449 -14.39198 -14.11724 -14.02181 -13.87646 -13.71707 -13.37470 -13.23943 -13.01628 -12.94433 -12.86455 -12.42437 -12.33693 -12.18711 -12.02787 -11.98300 -11.90297 -11.65303 -11.52511 -10.94303 -10.67933 -10.44516 -10.25789 -9.90661 -9.33496 -8.42171 -6.02849 1.29546 1.34374 1.43090 1.46574 1.55663 1.94173 2.21704 2.65379 2.88930 3.14251 3.28746 3.47291 3.62908 3.78681 3.90818 4.10970 4.13027 4.15483 4.22686 4.24928 4.28693 4.34156 4.38307 4.49177 4.50809 4.55064 4.70539 4.75782 4.79762 4.84280 4.91248 4.98862 5.02633 5.18364 5.26705 5.34525 5.47768 5.52996 5.89580 6.01425 6.09942 6.30355 6.43444 6.58240 6.86968 7.03072 7.38610 7.94397 8.75255 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.002327 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.624104 B =12029.156758 C =12839.367174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.406 6.406 4 C 0.055 3.945 5 C 0.523 3.477 6 O -0.581 6.581 7 N -0.615 5.615 8 C 0.102 3.898 9 C -0.092 4.092 10 H 0.092 0.908 11 C -0.136 4.136 12 C 0.085 3.915 13 H 0.097 0.903 14 N -0.662 5.662 15 C 0.059 3.941 16 C 0.450 3.550 17 O -0.611 6.611 18 N -0.592 5.592 19 C -0.328 4.328 20 H 0.057 0.943 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.232 1.232 27 C 0.075 3.925 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.348 0.652 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.065 0.935 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.682 -29.669 -1.245 34.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.326 6.326 4 C -0.024 4.024 5 C 0.313 3.687 6 O -0.461 6.461 7 N -0.350 5.350 8 C -0.020 4.020 9 C -0.111 4.111 10 H 0.111 0.889 11 C -0.193 4.193 12 C -0.026 4.026 13 H 0.115 0.885 14 N -0.294 5.294 15 C -0.073 4.073 16 C 0.238 3.762 17 O -0.496 6.496 18 N -0.233 5.233 19 C -0.457 4.457 20 H 0.076 0.924 21 C -0.213 4.213 22 N -0.574 5.574 23 Si 0.782 3.218 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.155 1.155 27 C -0.050 4.050 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.168 0.832 41 H 0.133 0.867 42 H 0.090 0.910 43 H 0.224 0.776 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.219 -29.313 -1.145 33.521 hybrid contribution -0.782 1.461 0.042 1.657 sum -17.001 -27.853 -1.103 32.650 Atomic orbital electron populations 1.21791 0.93507 1.03495 1.02309 1.22784 0.96042 0.81809 1.01941 1.87986 1.19764 1.29010 1.95806 1.22258 0.83379 0.91520 1.05277 1.20688 0.80563 0.91941 0.75504 1.90722 1.50016 1.53811 1.51513 1.48669 1.04870 1.08821 1.72609 1.22581 0.83227 0.93379 1.02822 1.22071 0.97358 0.92413 0.99298 0.88942 1.21772 1.01226 1.00724 0.95584 1.22779 0.88199 0.92407 0.99227 0.88533 1.60213 1.49223 1.08504 1.11427 1.21708 0.95514 0.89353 1.00752 1.20901 0.88203 0.83435 0.83684 1.90543 1.41304 1.80199 1.37504 1.42051 1.28911 1.13402 1.38961 1.19012 1.09171 0.94238 1.23299 0.92450 1.26084 1.00264 0.94530 1.00410 1.69796 1.36607 1.06823 1.44124 0.85399 0.78075 0.80180 0.78104 1.18398 1.19931 1.15506 1.23211 0.96412 0.84826 1.00583 0.88460 0.92924 0.92863 0.91264 0.91364 0.87350 0.87151 0.89282 0.87492 0.92230 0.93233 0.90436 0.83159 0.86702 0.90983 0.77560 0.91145 0.91597 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.54 6.66 71.98 0.48 1.02 16 3 O -0.41 -8.05 9.88 -129.94 -1.28 -9.34 16 4 C 0.05 0.75 5.49 71.24 0.39 1.14 16 5 C 0.52 11.88 7.97 87.66 0.70 12.58 16 6 O -0.58 -19.91 16.71 16.01 0.27 -19.65 16 7 N -0.61 -11.11 3.29 -810.09 -2.67 -13.78 16 8 C 0.10 1.04 6.42 86.53 0.56 1.60 16 9 C -0.09 -1.29 3.34 -9.90 -0.03 -1.33 16 10 H 0.09 1.47 8.05 -2.39 -0.02 1.45 16 11 C -0.14 -1.62 8.89 71.98 0.64 -0.98 16 12 C 0.09 1.65 2.93 46.01 0.13 1.79 16 13 H 0.10 1.82 7.54 -2.38 -0.02 1.80 16 14 N -0.66 -17.82 5.95 -489.94 -2.92 -20.73 16 15 C 0.06 1.76 6.03 85.56 0.52 2.27 16 16 C 0.45 20.02 7.82 87.66 0.69 20.71 16 17 O -0.61 -33.22 15.78 -3.04 -0.05 -33.27 16 18 N -0.59 -27.90 5.09 -306.99 -1.56 -29.47 16 19 C -0.33 -19.25 10.16 84.04 0.85 -18.39 16 20 H 0.06 4.00 7.39 -2.91 -0.02 3.97 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 22 N -0.93 -56.44 13.96 21.66 0.30 -56.13 16 23 Si 0.96 39.24 27.74 68.60 1.90 41.15 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.23 -7.98 6.52 99.48 0.65 -7.34 16 27 C 0.07 1.57 6.65 86.61 0.58 2.15 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.81 7.91 -2.39 -0.02 0.79 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.11 0.49 7.08 -2.39 -0.02 0.47 16 37 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.35 10.07 7.91 -89.70 -0.71 9.36 16 41 H 0.12 2.89 8.08 -2.39 -0.02 2.87 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.39 15.31 5.76 -92.70 -0.53 14.77 16 44 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.07 1.65 7.85 -2.38 -0.02 1.63 16 46 H 0.08 1.60 7.77 -2.39 -0.02 1.58 16 Total: -1.00 -85.98 380.46 0.38 -85.60 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.32 Total: 34.31 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 6.71 Total: 21.31 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.84 Total: -120.11 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -1.06 Total: -62.26 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.90 Total: 41.15 kcal Total: -85.98 0.38 -85.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214084921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.314 kcal (2) G-P(sol) polarization free energy of solvation -85.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds