Wall clock time and date at job start Fri Apr 10 2020 18:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 114.00176 * 2 1 4 4 H 1.09000 * 109.47268 * 29.99895 * 3 2 1 5 5 C 1.53004 * 109.47079 * 270.00403 * 3 2 1 6 6 C 1.50693 * 109.47506 * 150.00170 * 3 2 1 7 7 O 1.21289 * 119.99950 * 12.49601 * 6 3 2 8 8 N 1.34775 * 120.00372 * 192.49638 * 6 3 2 9 9 C 1.47423 * 125.64798 * 175.02520 * 8 6 3 10 10 C 1.54908 * 104.83032 * 204.16524 * 9 8 6 11 11 H 1.08992 * 111.00513 * 81.06622 * 10 9 8 12 12 C 1.53006 * 111.00719 * 204.92070 * 10 9 8 13 13 C 1.55160 * 101.58191 * 322.99161 * 10 9 8 14 14 H 1.09007 * 110.87257 * 277.06589 * 13 10 9 15 15 N 1.46899 * 110.71877 * 153.86546 * 13 10 9 16 16 C 1.46896 * 111.00033 * 160.02416 * 15 13 10 17 17 C 1.50704 * 109.47366 * 179.97438 * 16 15 13 18 18 O 1.21293 * 119.99897 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00181 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99884 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00491 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99878 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00155 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99862 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46715 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.47238 * 60.00455 * 24 22 20 27 27 H 1.48495 * 109.47587 * 299.99876 * 24 22 20 28 28 C 1.47018 * 125.64654 * 355.07113 * 8 6 3 29 29 H 1.09000 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46659 * 299.99941 * 1 2 3 31 31 H 1.08994 * 109.46806 * 59.99962 * 1 2 3 32 32 H 1.09002 * 109.47049 * 304.74390 * 5 3 2 33 33 H 1.08995 * 109.47168 * 64.74228 * 5 3 2 34 34 H 1.08994 * 109.47281 * 184.74315 * 5 3 2 35 35 H 1.08994 * 110.36998 * 323.00714 * 9 8 6 36 36 H 1.09000 * 110.36494 * 85.32920 * 9 8 6 37 37 H 1.08990 * 109.47525 * 172.19917 * 12 10 9 38 38 H 1.09000 * 109.46643 * 292.19948 * 12 10 9 39 39 H 1.09003 * 109.47025 * 52.19017 * 12 10 9 40 40 H 1.00904 * 111.00357 * 36.07344 * 15 13 10 41 41 H 1.08998 * 109.47175 * 60.00209 * 16 15 13 42 42 H 1.09002 * 109.47601 * 299.99708 * 16 15 13 43 43 H 0.97001 * 119.99536 * 359.97438 * 19 17 16 44 44 H 0.97003 * 119.99535 * 359.97438 * 23 22 20 45 45 H 1.08996 * 109.88291 * 59.48274 * 28 8 6 46 46 H 1.09003 * 109.88205 * 298.32127 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7103 7 8 3.8543 0.1973 0.9703 8 7 3.9539 2.4119 1.0568 9 6 5.1973 2.5174 1.8417 10 6 5.1444 3.9276 2.4806 11 1 4.5185 3.9290 3.3729 12 6 6.5510 4.4385 2.7993 13 6 4.4946 4.7604 1.3441 14 1 5.2419 5.0703 0.6136 15 7 3.7911 5.9277 1.8922 16 6 3.5871 6.9522 0.8594 17 6 2.8637 8.1313 1.4574 18 8 2.5494 8.1196 2.6288 19 7 2.5660 9.1989 0.6905 20 6 1.9084 10.2718 1.2346 21 1 1.6292 10.2617 2.2779 22 6 1.6019 11.3726 0.4441 23 7 1.9429 11.3856 -0.8250 24 14 0.7052 12.8341 1.1853 25 1 0.4996 13.8701 0.1413 26 1 1.5153 13.4022 2.2928 27 1 -0.6114 12.3925 1.7111 28 6 3.4955 3.7665 0.7153 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.8137 1.0341 -1.9804 33 1 1.2497 1.8824 -1.9312 34 1 2.7373 2.7295 -1.4438 35 1 5.2234 1.7508 2.6160 36 1 6.0662 2.4288 1.1896 37 1 6.4962 5.4798 3.1166 38 1 6.9834 3.8372 3.5990 39 1 7.1756 4.3622 1.9092 40 1 4.2848 6.3077 2.6859 41 1 2.9922 6.5355 0.0468 42 1 4.5535 7.2763 0.4732 43 1 2.8177 9.2084 -0.2463 44 1 2.4088 10.6268 -1.2098 45 1 2.4989 3.9344 1.1234 46 1 3.4807 3.8909 -0.3675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214231181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:48 Heat of formation + Delta-G solvation = -109.361610 kcal Electronic energy + Delta-G solvation = -26540.899630 eV Core-core repulsion = 22658.844424 eV Total energy + Delta-G solvation = -3882.055207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60698 -38.94301 -38.25587 -37.38783 -34.92970 -34.15981 -33.16773 -31.52604 -31.13614 -29.01960 -27.11857 -26.92956 -26.31905 -24.32222 -23.77572 -21.93822 -20.68451 -19.80942 -19.55117 -17.96992 -17.74429 -17.13345 -16.53536 -16.33834 -15.70456 -15.51182 -15.25721 -14.99349 -14.72073 -14.27561 -14.10353 -13.86885 -13.72934 -13.62085 -13.24074 -13.13376 -12.99228 -12.80323 -12.43222 -12.41769 -12.28402 -12.07354 -11.75930 -11.43728 -11.36127 -11.29343 -11.22762 -10.98599 -10.73771 -10.28754 -10.24500 -9.92205 -9.72082 -9.60705 -8.86436 -8.64170 -8.31299 -8.09741 -6.81071 -3.94713 2.37939 2.46217 3.26555 3.31486 3.51415 3.56699 3.76651 3.91360 4.07841 4.26087 4.27709 4.41280 4.59989 4.67040 4.74965 4.90748 4.94148 5.01266 5.05381 5.08855 5.16517 5.18707 5.23075 5.33594 5.39199 5.39997 5.46950 5.49112 5.53104 5.62739 5.68465 5.72959 5.80718 5.84395 5.91553 5.94613 6.07690 6.72461 6.96750 7.24219 7.40794 7.74287 7.95024 8.02067 8.53325 8.73072 9.40883 9.80227 10.62234 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.002808 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.670756 B = 9969.572199 C =11226.814237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.073 3.927 4 H 0.088 0.912 5 C -0.174 4.174 6 C 0.533 3.467 7 O -0.523 6.523 8 N -0.616 5.616 9 C 0.115 3.885 10 C -0.107 4.107 11 H 0.098 0.902 12 C -0.144 4.144 13 C 0.079 3.921 14 H 0.063 0.937 15 N -0.657 5.657 16 C 0.049 3.951 17 C 0.442 3.558 18 O -0.576 6.576 19 N -0.574 5.574 20 C -0.383 4.383 21 H 0.099 0.901 22 C -0.008 4.008 23 N -0.900 5.900 24 Si 1.091 2.909 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.100 3.900 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.357 0.643 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.376 0.624 44 H 0.261 0.739 45 H 0.086 0.914 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -16.896 -0.995 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.280 6.280 3 C 0.012 3.988 4 H 0.106 0.894 5 C -0.231 4.231 6 C 0.321 3.679 7 O -0.398 6.398 8 N -0.352 5.352 9 C -0.007 4.007 10 C -0.126 4.126 11 H 0.116 0.884 12 C -0.201 4.201 13 C -0.032 4.032 14 H 0.081 0.919 15 N -0.290 5.290 16 C -0.084 4.084 17 C 0.228 3.772 18 O -0.460 6.460 19 N -0.212 5.212 20 C -0.512 4.512 21 H 0.117 0.883 22 C -0.211 4.211 23 N -0.539 5.539 24 Si 0.916 3.084 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.209 1.209 28 C -0.023 4.023 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.178 0.822 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.208 0.792 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.084 -16.475 -0.506 16.769 hybrid contribution 1.386 -0.864 -0.440 1.691 sum 4.470 -17.340 -0.946 17.931 Atomic orbital electron populations 1.22901 0.80414 1.03238 1.00315 1.88025 1.19822 1.25170 1.94987 1.21876 0.93208 0.86818 0.96913 0.89444 1.22284 1.03616 1.02410 0.94798 1.20031 0.86219 0.82614 0.79074 1.90715 1.66074 1.28779 1.54241 1.48335 1.26395 1.05738 1.54764 1.22273 0.86484 0.97159 0.94799 1.22556 0.97817 0.93520 0.98716 0.88371 1.21735 0.94735 1.01692 1.01978 1.22576 0.93431 0.91231 0.95985 0.91921 1.60029 1.53049 1.06930 1.09038 1.21757 0.99366 0.92443 0.94850 1.19681 0.85756 0.84215 0.87597 1.90539 1.57635 1.81206 1.16602 1.41935 1.52193 1.15913 1.11188 1.20533 1.35906 0.95746 0.99039 0.88299 1.26515 0.98445 1.01250 0.94888 1.70914 1.37912 1.32752 1.12317 0.83141 0.75913 0.74273 0.75032 1.20389 1.20998 1.20949 1.22307 0.99858 0.80558 0.99609 0.89105 0.93662 0.93663 0.91002 0.90969 0.90595 0.90171 0.91200 0.91763 0.91831 0.92283 0.82198 0.89639 0.93643 0.79153 0.92767 0.89560 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.36 -4.45 9.91 -54.82 -0.54 -5.00 16 3 C 0.07 0.80 2.53 -27.88 -0.07 0.73 16 4 H 0.09 0.83 7.49 -51.93 -0.39 0.44 16 5 C -0.17 -1.52 9.44 37.16 0.35 -1.17 16 6 C 0.53 7.12 7.17 -10.99 -0.08 7.04 16 7 O -0.52 -8.98 16.84 -14.04 -0.24 -9.22 16 8 N -0.62 -6.98 3.33 -170.53 -0.57 -7.55 16 9 C 0.12 1.17 6.36 -2.53 -0.02 1.15 16 10 C -0.11 -1.00 3.07 -88.47 -0.27 -1.27 16 11 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.14 -1.13 9.31 37.16 0.35 -0.78 16 13 C 0.08 0.83 2.71 -65.88 -0.18 0.65 16 14 H 0.06 0.61 7.80 -51.93 -0.40 0.21 16 15 N -0.66 -9.13 5.92 -106.05 -0.63 -9.76 16 16 C 0.05 0.75 6.02 -4.98 -0.03 0.72 16 17 C 0.44 9.79 7.82 -10.98 -0.09 9.70 16 18 O -0.58 -15.00 15.78 5.55 0.09 -14.91 16 19 N -0.57 -13.78 5.28 -10.96 -0.06 -13.84 16 20 C -0.38 -10.44 9.68 -14.93 -0.14 -10.59 16 21 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 22 C -0.01 -0.22 5.50 -17.47 -0.10 -0.32 16 23 N -0.90 -24.53 13.68 55.50 0.76 -23.77 16 24 Si 1.09 23.65 29.92 -169.99 -5.09 18.56 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 28 C 0.10 1.03 5.74 -3.07 -0.02 1.01 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.04 0.30 7.98 -51.93 -0.41 -0.11 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.53 7.98 -51.93 -0.41 0.11 16 34 H 0.08 0.60 5.52 -51.93 -0.29 0.31 16 35 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.07 0.65 7.98 -51.93 -0.41 0.24 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.42 8.07 -51.93 -0.42 0.01 16 40 H 0.36 5.21 8.20 -39.29 -0.32 4.89 16 41 H 0.09 1.19 8.13 -51.93 -0.42 0.76 16 42 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.38 8.27 6.73 -40.82 -0.27 8.00 16 44 H 0.26 6.79 6.78 -40.82 -0.28 6.52 16 45 H 0.09 0.97 7.82 -51.93 -0.41 0.57 16 46 H 0.07 0.63 6.04 -51.93 -0.31 0.31 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -34.67 376.80 -7.10 -41.77 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.30 Total: 9.85 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 0.80 Total: 8.20 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.49 Total: -54.92 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.69 Total: -29.13 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.09 Total: 18.56 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.67 -7.10 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214231181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.594 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds