Wall clock time and date at job start Fri Apr 10 2020 18:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00484 * 2 1 4 4 H 1.09001 * 109.46798 * 329.99982 * 3 2 1 5 5 C 1.53006 * 109.47036 * 89.99585 * 3 2 1 6 6 C 1.50697 * 109.47590 * 209.99962 * 3 2 1 7 7 O 1.21282 * 119.99755 * 355.00038 * 6 3 2 8 8 N 1.34766 * 120.00340 * 175.00030 * 6 3 2 9 9 C 1.48118 * 127.03200 * 359.68357 * 8 6 3 10 10 C 1.54601 * 103.42545 * 219.28343 * 9 8 6 11 11 H 1.09001 * 110.57154 * 81.16880 * 10 9 8 12 12 C 1.52993 * 110.99485 * 204.37401 * 10 9 8 13 13 C 1.54621 * 102.91239 * 322.87199 * 10 9 8 14 14 H 1.08995 * 110.32227 * 262.80646 * 13 10 9 15 15 N 1.46894 * 110.32901 * 140.58646 * 13 10 9 16 16 C 1.46897 * 110.99768 * 157.92619 * 15 13 10 17 17 C 1.50704 * 109.47028 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00074 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00090 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99894 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99815 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99741 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00209 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99828 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46959 * 90.00328 * 24 22 20 26 26 H 1.48494 * 109.47263 * 210.00215 * 24 22 20 27 27 H 1.48500 * 109.47524 * 330.00770 * 24 22 20 28 28 C 1.47487 * 127.03846 * 179.97438 * 8 6 3 29 29 H 1.09001 * 109.46884 * 59.99871 * 1 2 3 30 30 H 1.09003 * 109.47640 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47629 * 300.00382 * 1 2 3 32 32 H 1.09000 * 109.47050 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46801 * 300.00369 * 5 3 2 34 34 H 1.09001 * 109.46998 * 59.99965 * 5 3 2 35 35 H 1.08998 * 110.66286 * 337.76814 * 9 8 6 36 36 H 1.09003 * 110.66277 * 100.89084 * 9 8 6 37 37 H 1.08993 * 109.47646 * 173.65407 * 12 10 9 38 38 H 1.08999 * 109.46704 * 293.65533 * 12 10 9 39 39 H 1.09001 * 109.47309 * 53.65090 * 12 10 9 40 40 H 1.00896 * 110.99997 * 281.87630 * 15 13 10 41 41 H 1.08995 * 109.47310 * 299.99493 * 16 15 13 42 42 H 1.09003 * 109.47529 * 60.00217 * 16 15 13 43 43 H 0.97000 * 119.99926 * 0.02562 * 19 17 16 44 44 H 0.97000 * 120.00142 * 180.02562 * 23 22 20 45 45 H 1.08996 * 109.91504 * 273.88030 * 28 8 6 46 46 H 1.08997 * 109.90985 * 35.15567 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4426 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2044 -1.0914 8 7 4.0255 2.4038 -0.9223 9 6 3.6215 3.7743 -0.5321 10 6 4.0668 4.6363 -1.7358 11 1 3.3327 4.5801 -2.5395 12 6 4.2960 6.0891 -1.3147 13 6 5.3971 3.9734 -2.1621 14 1 6.2425 4.5111 -1.7331 15 7 5.5033 3.9381 -3.6267 16 6 6.9047 3.8162 -4.0501 17 6 6.9736 3.7826 -5.5552 18 8 5.9555 3.8528 -6.2107 19 7 8.1666 3.6746 -6.1729 20 6 8.2294 3.6446 -7.5421 21 1 7.3229 3.7079 -8.1257 22 6 9.4594 3.5338 -8.1789 23 7 10.5625 3.4573 -7.4688 24 14 9.5449 3.4922 -10.0445 25 1 9.6799 4.8765 -10.5648 26 1 10.7186 2.6874 -10.4684 27 1 8.3040 2.8797 -10.5834 28 6 5.3304 2.5427 -1.5955 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.6607 2.7672 1.4426 33 1 1.2568 1.8014 1.9563 34 1 2.8828 1.0773 1.9564 35 1 2.5415 3.8331 -0.3966 36 1 4.1414 4.0853 0.3741 37 1 4.7155 6.6481 -2.1511 38 1 3.3467 6.5357 -1.0188 39 1 4.9891 6.1187 -0.4739 40 1 4.9431 3.1927 -4.0121 41 1 7.4719 4.6698 -3.6790 42 1 7.3274 2.8960 -3.6468 43 1 8.9808 3.6182 -5.6487 44 1 11.4211 3.3803 -7.9134 45 1 6.1365 2.3893 -0.8780 46 1 5.4088 1.8184 -2.4062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214231182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:51 Heat of formation + Delta-G solvation = -108.103952 kcal Electronic energy + Delta-G solvation = -26432.517466 eV Core-core repulsion = 22550.516796 eV Total energy + Delta-G solvation = -3882.000671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59616 -38.91117 -38.07454 -37.36494 -34.77802 -33.81739 -32.74766 -31.92042 -31.20807 -28.83582 -27.19850 -26.65994 -26.32032 -24.58074 -23.70575 -22.19105 -20.55637 -19.72037 -19.18837 -17.88661 -17.72063 -17.00827 -16.32245 -16.10561 -15.86049 -15.46150 -15.10711 -14.76296 -14.54677 -14.46519 -13.94182 -13.91286 -13.65935 -13.51117 -13.13866 -12.99426 -12.85266 -12.60269 -12.42173 -12.27157 -12.23507 -12.04759 -11.62499 -11.55309 -11.50826 -11.25263 -11.07588 -11.03653 -10.86480 -10.38503 -10.31879 -10.20958 -9.72477 -9.50313 -9.03664 -8.45349 -8.07586 -7.95422 -6.40974 -3.81723 2.41166 2.43187 3.18825 3.27470 3.33555 3.53441 3.90892 4.01923 4.11959 4.26953 4.29042 4.46034 4.58058 4.61205 4.82316 4.90686 5.00475 5.01722 5.07159 5.12141 5.13775 5.16376 5.25701 5.26897 5.33220 5.35550 5.49731 5.56766 5.61094 5.67810 5.75743 5.84600 5.90689 5.98128 6.05122 6.15540 6.28721 6.67655 7.15425 7.28790 7.56073 7.56821 7.97893 8.06821 8.61684 9.18578 9.54748 10.06040 10.76762 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.002521 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.355315 B =11104.355943 C =11789.244364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.075 3.925 4 H 0.086 0.914 5 C -0.172 4.172 6 C 0.531 3.469 7 O -0.517 6.517 8 N -0.618 5.618 9 C 0.098 3.902 10 C -0.095 4.095 11 H 0.093 0.907 12 C -0.137 4.137 13 C 0.080 3.920 14 H 0.096 0.904 15 N -0.655 5.655 16 C 0.048 3.952 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.075 3.925 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.353 0.647 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.069 0.931 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 2.069 21.034 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.013 3.987 4 H 0.104 0.896 5 C -0.230 4.230 6 C 0.318 3.682 7 O -0.391 6.391 8 N -0.354 5.354 9 C -0.025 4.025 10 C -0.115 4.115 11 H 0.111 0.889 12 C -0.195 4.195 13 C -0.032 4.032 14 H 0.114 0.886 15 N -0.287 5.287 16 C -0.085 4.085 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.049 4.049 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.173 0.827 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.473 1.898 20.238 25.546 hybrid contribution 0.695 -0.746 -0.349 1.078 sum -14.778 1.152 19.889 24.805 Atomic orbital electron populations 1.22895 0.80470 1.03375 1.00062 1.88053 1.19769 1.25062 1.94919 1.21841 0.93261 0.86873 0.96686 0.89603 1.22287 1.03467 1.02329 0.94918 1.20026 0.85846 0.82647 0.79666 1.90755 1.69196 1.28992 1.50202 1.48643 1.21689 1.06446 1.58622 1.22754 1.00602 0.81022 0.98101 1.22247 0.97557 0.94845 0.96885 0.88898 1.21685 1.01519 0.94522 1.01767 1.22677 0.98547 0.92932 0.89072 0.88560 1.60217 1.09395 1.53545 1.05537 1.21745 0.89955 1.00995 0.95790 1.19780 0.84636 0.84520 0.88484 1.90528 1.34404 1.55372 1.66464 1.41860 1.06748 1.63878 1.07483 1.19700 0.94483 1.47186 0.81487 0.87931 1.25264 0.94762 0.97298 1.00631 1.69609 0.98112 1.50253 1.36326 0.85854 0.77906 0.78261 0.82250 1.20388 1.20930 1.19420 1.23032 0.84774 0.99198 0.97906 0.93701 0.89033 0.93822 0.90632 0.91152 0.91051 0.90126 0.90447 0.91195 0.92550 0.92664 0.82654 0.89392 0.93680 0.77448 0.91866 0.91263 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.36 -4.24 9.88 -55.09 -0.54 -4.78 16 3 C 0.07 0.73 2.42 -27.88 -0.07 0.66 16 4 H 0.09 0.64 7.31 -51.93 -0.38 0.26 16 5 C -0.17 -1.18 9.34 37.16 0.35 -0.84 16 6 C 0.53 7.12 7.27 -10.99 -0.08 7.04 16 7 O -0.52 -9.53 16.84 -14.30 -0.24 -9.77 16 8 N -0.62 -6.84 3.29 -169.97 -0.56 -7.40 16 9 C 0.10 0.73 4.82 -2.31 -0.01 0.71 16 10 C -0.10 -0.86 3.35 -88.93 -0.30 -1.16 16 11 H 0.09 0.99 8.06 -51.93 -0.42 0.57 16 12 C -0.14 -1.03 9.17 37.15 0.34 -0.69 16 13 C 0.08 0.89 2.88 -66.33 -0.19 0.70 16 14 H 0.10 0.97 7.57 -51.93 -0.39 0.58 16 15 N -0.66 -10.12 5.85 -106.53 -0.62 -10.74 16 16 C 0.05 0.82 6.00 -4.98 -0.03 0.79 16 17 C 0.44 10.39 7.82 -10.98 -0.09 10.31 16 18 O -0.58 -15.92 15.78 5.54 0.09 -15.83 16 19 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 24 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.08 0.90 6.55 -2.97 -0.02 0.88 16 29 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.23 7.87 -51.93 -0.41 -0.18 16 32 H 0.07 0.40 5.94 -51.93 -0.31 0.09 16 33 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.44 6.67 -51.93 -0.35 0.09 16 36 H 0.08 0.45 7.92 -51.93 -0.41 0.04 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.35 8.11 -51.93 -0.42 -0.07 16 40 H 0.35 6.02 7.93 -39.29 -0.31 5.71 16 41 H 0.09 1.35 8.08 -51.93 -0.42 0.94 16 42 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 43 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 1.17 7.54 -51.93 -0.39 0.77 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -35.45 377.61 -7.20 -42.64 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.41 Total: 10.68 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 0.76 Total: 11.65 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.52 Total: -56.51 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.70 Total: -30.38 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.45 -7.20 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214231182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.463 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds