Wall clock time and date at job start Fri Apr 10 2020 18:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47325 * 2 1 4 4 C 1.50703 * 109.46825 * 119.99996 * 2 1 3 5 5 O 1.21279 * 119.99913 * 240.00052 * 4 2 1 6 6 N 1.34782 * 119.99748 * 59.99903 * 4 2 1 7 7 C 1.46494 * 120.00151 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99687 * 180.02562 * 6 4 2 9 9 C 1.50705 * 109.46800 * 269.99749 * 8 6 4 10 10 O 1.21276 * 119.99954 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99963 * 179.97438 * 9 8 6 12 12 C 1.46498 * 120.00443 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.63605 * 36.68438 * 12 11 9 14 14 C 1.54331 * 110.71669 * 273.55070 * 12 11 9 15 15 N 1.47028 * 107.26564 * 263.82631 * 14 12 11 16 16 C 1.36931 * 125.64199 * 181.02488 * 15 14 12 17 17 H 1.08002 * 120.00818 * 16.32206 * 16 15 14 18 18 C 1.38818 * 119.99708 * 196.32158 * 16 15 14 19 19 N 1.31621 * 120.00130 * 201.20043 * 18 16 15 20 20 Si 1.86803 * 119.99919 * 21.20398 * 18 16 15 21 21 H 1.48494 * 109.46964 * 275.67399 * 20 18 16 22 22 H 1.48503 * 109.46875 * 35.66879 * 20 18 16 23 23 H 1.48500 * 109.47080 * 155.67134 * 20 18 16 24 24 C 1.47424 * 108.70353 * 1.28615 * 15 14 12 25 25 C 1.55125 * 104.72211 * 335.55276 * 24 15 14 26 26 H 1.08998 * 111.19340 * 279.18741 * 25 24 15 27 27 O 1.42906 * 110.93835 * 155.28986 * 25 24 15 28 28 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46987 * 300.00445 * 1 2 3 30 30 H 1.09002 * 109.46418 * 59.99620 * 1 2 3 31 31 H 1.09003 * 109.46774 * 239.99841 * 2 1 3 32 32 H 1.08999 * 109.46759 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47067 * 300.00042 * 3 2 1 34 34 H 1.08991 * 109.46974 * 59.99915 * 3 2 1 35 35 H 1.08997 * 109.47242 * 270.00299 * 7 6 4 36 36 H 1.08998 * 109.47316 * 29.99942 * 7 6 4 37 37 H 1.09002 * 109.47458 * 150.00253 * 7 6 4 38 38 H 1.09003 * 109.47206 * 149.99960 * 8 6 4 39 39 H 1.08999 * 109.47552 * 29.99548 * 8 6 4 40 40 H 0.97010 * 119.99761 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.88322 * 144.40991 * 14 12 11 42 42 H 1.09003 * 110.01080 * 23.31241 * 14 12 11 43 43 H 0.97001 * 120.00056 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.36262 * 94.48660 * 24 15 14 45 45 H 1.09003 * 110.36406 * 216.80440 * 24 15 14 46 46 H 0.96700 * 113.99817 * 67.95074 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -0.1210 2.0288 6 7 1.7066 -2.0008 1.4437 7 6 0.8640 -2.7125 0.4797 8 6 2.1944 -2.6912 2.6402 9 6 3.5221 -3.3382 2.3405 10 8 4.0127 -3.2325 1.2365 11 7 4.1648 -4.0334 3.2998 12 6 5.4557 -4.6619 3.0088 13 1 6.0470 -4.0341 2.3422 14 6 5.2546 -6.0661 2.4007 15 7 5.3649 -7.0371 3.4992 16 6 5.2665 -8.3972 3.3747 17 1 5.3581 -8.8587 2.4025 18 6 5.0491 -9.1831 4.4982 19 7 5.3611 -10.4616 4.4774 20 14 4.3137 -8.4260 6.0395 21 1 5.3914 -7.7979 6.8450 22 1 3.3165 -7.3943 5.6567 23 1 3.6486 -9.4840 6.8417 24 6 5.5926 -6.3037 4.7576 25 6 6.2299 -4.9587 4.3201 26 1 7.2966 -5.0726 4.1269 27 8 5.9946 -3.9410 5.2954 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 -0.1839 -2.5923 0.7547 36 1 1.0271 -2.3032 -0.5173 37 1 1.1216 -3.7717 0.4842 38 1 1.4763 -3.4559 2.9367 39 1 2.3153 -1.9725 3.4507 40 1 3.7725 -4.1176 4.1830 41 1 6.0251 -6.2609 1.6549 42 1 4.2684 -6.1360 1.9417 43 1 5.2089 -11.0108 5.2624 44 1 4.6471 -6.1289 5.2711 45 1 6.2778 -6.8565 5.4002 46 1 6.4579 -4.0835 6.1321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219730060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:21 Heat of formation + Delta-G solvation = -79.330800 kcal Electronic energy + Delta-G solvation = -27377.193070 eV Core-core repulsion = 23496.440097 eV Total energy + Delta-G solvation = -3880.752973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57613 -39.53229 -38.02171 -35.64849 -35.38705 -34.69087 -33.86438 -31.96000 -29.79383 -28.45529 -27.75812 -27.15680 -26.69824 -24.33344 -23.10440 -21.17243 -20.90990 -19.84380 -19.15117 -17.64614 -17.37722 -17.23223 -16.82519 -16.45728 -15.80025 -15.37554 -15.19838 -14.88435 -14.57764 -14.21741 -13.90002 -13.60869 -13.42804 -13.22495 -13.18351 -12.99951 -12.86423 -12.60713 -12.53528 -12.32767 -12.03183 -11.97110 -11.68738 -11.43875 -11.31794 -11.30660 -11.27545 -10.98676 -10.63287 -10.18590 -9.98501 -9.82694 -9.67107 -9.44406 -8.82788 -8.79229 -8.76531 -7.17241 -6.01373 -3.33048 2.44752 2.72059 2.80278 3.22855 3.37462 3.40679 3.46109 4.18057 4.24476 4.44767 4.59886 4.68976 4.81315 4.88364 4.91615 4.96998 5.03465 5.09992 5.17261 5.22925 5.30335 5.32009 5.34597 5.39760 5.47320 5.51238 5.58767 5.66600 5.82399 5.88320 5.88947 6.01717 6.15036 6.23336 6.37643 6.43372 6.50022 6.84046 7.15563 7.54354 7.71821 7.74595 8.03445 8.22941 8.41447 8.73751 9.59429 10.04470 11.14563 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.003242 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.739265 B = 8635.175933 C = 9017.277449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.524 3.476 5 O -0.537 6.537 6 N -0.598 5.598 7 C 0.079 3.921 8 C 0.095 3.905 9 C 0.499 3.501 10 O -0.539 6.539 11 N -0.702 5.702 12 C 0.146 3.854 13 H 0.097 0.903 14 C 0.128 3.872 15 N -0.605 5.605 16 C -0.242 4.242 17 H 0.096 0.904 18 C 0.019 3.981 19 N -0.908 5.908 20 Si 0.889 3.111 21 H -0.287 1.287 22 H -0.277 1.277 23 H -0.303 1.303 24 C 0.078 3.922 25 C 0.080 3.920 26 H 0.083 0.917 27 O -0.561 6.561 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.404 0.596 41 H 0.046 0.954 42 H 0.040 0.960 43 H 0.264 0.736 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 19.438 -5.121 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.134 4.134 3 C -0.189 4.189 4 C 0.312 3.688 5 O -0.413 6.413 6 N -0.331 5.331 7 C -0.063 4.063 8 C -0.031 4.031 9 C 0.284 3.716 10 O -0.416 6.416 11 N -0.353 5.353 12 C 0.040 3.960 13 H 0.115 0.885 14 C 0.002 3.998 15 N -0.333 5.333 16 C -0.368 4.368 17 H 0.113 0.887 18 C -0.179 4.179 19 N -0.552 5.552 20 Si 0.719 3.281 21 H -0.215 1.215 22 H -0.203 1.203 23 H -0.231 1.231 24 C -0.048 4.048 25 C 0.020 3.980 26 H 0.100 0.900 27 O -0.365 6.365 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.239 0.761 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.136 19.823 -5.922 22.616 hybrid contribution -0.262 -0.331 1.814 1.863 sum -9.398 19.492 -4.108 22.026 Atomic orbital electron populations 1.22064 0.92994 1.03471 1.02836 1.21269 0.97565 0.97913 0.96625 1.21606 1.01942 0.93448 1.01936 1.20726 0.79372 0.81076 0.87617 1.90692 1.37479 1.66031 1.47090 1.47366 1.51156 1.11104 1.23469 1.21991 0.93624 0.98114 0.92603 1.21299 0.94050 0.98294 0.89489 1.21020 0.87168 0.78426 0.85010 1.90672 1.67606 1.60606 1.22679 1.45666 1.21674 1.52997 1.14988 1.21993 0.84006 0.94532 0.95461 0.88517 1.21800 0.99855 0.86432 0.91727 1.44644 1.84768 1.02373 1.01506 1.18675 1.43993 0.77794 0.96385 0.88675 1.24975 1.00360 0.95094 0.97505 1.69826 1.49221 1.06014 1.30165 0.86959 0.79892 0.77425 0.83776 1.21452 1.20321 1.23055 1.22728 0.98455 0.92069 0.91503 1.23400 0.98613 0.87633 0.88369 0.89967 1.86413 1.74676 1.48206 1.27223 0.90987 0.92176 0.91459 0.88335 0.91918 0.92079 0.92003 0.91998 0.90505 0.90758 0.87413 0.86917 0.76132 0.93580 0.94169 0.92634 0.94616 0.91744 0.77321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.83 37.16 0.33 -0.68 16 2 C -0.11 -1.03 2.45 -91.77 -0.23 -1.26 16 3 C -0.13 -1.20 8.48 37.16 0.32 -0.89 16 4 C 0.52 6.80 7.08 -10.98 -0.08 6.73 16 5 O -0.54 -9.02 15.56 5.56 0.09 -8.93 16 6 N -0.60 -6.95 2.36 -182.96 -0.43 -7.38 16 7 C 0.08 0.65 8.80 59.84 0.53 1.18 16 8 C 0.10 1.16 5.89 -5.19 -0.03 1.13 16 9 C 0.50 7.92 7.89 -10.98 -0.09 7.84 16 10 O -0.54 -10.27 16.16 5.56 0.09 -10.18 16 11 N -0.70 -11.15 4.78 -52.03 -0.25 -11.40 16 12 C 0.15 2.53 3.14 -66.10 -0.21 2.32 16 13 H 0.10 1.69 7.69 -51.93 -0.40 1.29 16 14 C 0.13 2.58 6.98 -3.06 -0.02 2.56 16 15 N -0.60 -14.17 3.24 -169.92 -0.55 -14.72 16 16 C -0.24 -6.71 10.60 -15.06 -0.16 -6.87 16 17 H 0.10 2.82 8.06 -52.49 -0.42 2.40 16 18 C 0.02 0.54 5.45 -17.43 -0.09 0.45 16 19 N -0.91 -27.54 13.97 55.49 0.78 -26.76 16 20 Si 0.89 21.84 24.23 -169.99 -4.12 17.72 16 21 H -0.29 -6.70 6.39 56.52 0.36 -6.34 16 22 H -0.28 -6.64 6.45 56.52 0.36 -6.27 16 23 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 24 C 0.08 1.60 4.39 -2.41 -0.01 1.58 16 25 C 0.08 1.32 4.23 -24.47 -0.10 1.21 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 27 O -0.56 -7.96 12.63 -35.23 -0.45 -8.41 16 28 H 0.07 0.39 4.53 -51.93 -0.24 0.16 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.82 7.40 -51.93 -0.38 0.44 16 32 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.06 0.36 6.95 -51.93 -0.36 0.00 16 36 H 0.08 0.54 6.01 -51.93 -0.31 0.23 16 37 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.11 1.00 8.07 -51.93 -0.42 0.58 16 39 H 0.11 1.36 7.42 -51.93 -0.39 0.98 16 40 H 0.40 5.94 8.20 -40.82 -0.33 5.61 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.04 0.85 8.05 -51.93 -0.42 0.43 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.04 0.76 5.55 -51.93 -0.29 0.47 16 45 H 0.06 1.39 6.24 -51.93 -0.32 1.07 16 46 H 0.38 3.84 9.12 45.56 0.42 4.25 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -36.38 363.67 -5.67 -42.05 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.46 Total: 7.24 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 0.15 Total: 15.30 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.46 Total: -60.26 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.27 Total: -27.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.12 Total: 17.72 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.38 -5.67 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219730060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.284 kcal (2) G-P(sol) polarization free energy of solvation -36.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds