Wall clock time and date at job start Fri Apr 10 2020 18:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47170 * 2 1 4 4 N 1.46498 * 109.47581 * 239.99501 * 2 1 3 5 5 C 1.34772 * 119.99961 * 84.99572 * 4 2 1 6 6 O 1.21283 * 120.00068 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99971 * 179.97438 * 5 4 2 8 8 H 1.09003 * 109.46956 * 40.00838 * 7 5 4 9 9 N 1.46900 * 109.46864 * 160.00514 * 7 5 4 10 10 C 1.53000 * 109.47274 * 280.00529 * 7 5 4 11 11 O 1.42902 * 109.46808 * 174.99951 * 10 7 5 12 12 C 1.50704 * 109.46753 * 119.99491 * 2 1 3 13 13 O 1.21284 * 120.00014 * 120.00170 * 12 2 1 14 14 N 1.34776 * 120.00282 * 300.00401 * 12 2 1 15 15 C 1.46491 * 120.00197 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.41326 * 324.85352 * 15 14 12 17 17 C 1.52951 * 109.41713 * 84.64383 * 15 14 12 18 18 C 1.53228 * 109.40999 * 183.70456 * 17 15 14 19 19 C 1.51276 * 108.53512 * 305.37424 * 18 17 15 20 20 C 1.37871 * 120.84883 * 231.32177 * 19 18 17 21 21 N 1.31521 * 120.00151 * 0.02562 * 20 19 18 22 22 Si 1.86802 * 119.99997 * 180.02562 * 20 19 18 23 23 H 1.48499 * 109.47145 * 60.00080 * 22 20 19 24 24 H 1.48508 * 109.47233 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46974 * 299.99970 * 22 20 19 26 26 C 1.51269 * 118.29876 * 51.34590 * 19 18 17 27 27 C 1.52963 * 109.41344 * 204.99903 * 15 14 12 28 28 H 1.08997 * 109.46882 * 60.00746 * 1 2 3 29 29 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47480 * 300.00296 * 1 2 3 31 31 H 0.97003 * 119.99855 * 265.00760 * 4 2 1 32 32 H 1.00897 * 111.00358 * 296.04693 * 9 7 5 33 33 H 1.00906 * 110.99787 * 60.00915 * 9 7 5 34 34 H 1.09000 * 109.47188 * 295.00172 * 10 7 5 35 35 H 1.09004 * 109.46942 * 55.00567 * 10 7 5 36 36 H 0.96704 * 113.99860 * 180.02562 * 11 10 7 37 37 H 0.96998 * 119.99487 * 359.97438 * 14 12 2 38 38 H 1.08999 * 109.48657 * 63.72470 * 17 15 14 39 39 H 1.09003 * 109.48507 * 303.68491 * 17 15 14 40 40 H 1.08991 * 109.63157 * 185.65714 * 18 17 15 41 41 H 1.09003 * 109.62578 * 65.08228 * 18 17 15 42 42 H 0.97003 * 119.99821 * 180.02562 * 21 20 19 43 43 H 1.08995 * 109.62532 * 68.36794 * 26 19 18 44 44 H 1.09001 * 109.62320 * 188.93834 * 26 19 18 45 45 H 1.08997 * 109.48191 * 56.31295 * 27 15 14 46 46 H 1.08998 * 109.47929 * 296.27405 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8590 1.1584 -2.4116 7 6 2.6501 -0.7288 -3.5873 8 1 2.2159 -1.7276 -3.6332 9 7 2.2615 0.0296 -4.7839 10 6 4.1750 -0.8380 -3.5256 11 8 4.6422 -1.6122 -4.6321 12 6 2.0323 -0.7103 1.2306 13 8 2.7295 -1.6964 1.1194 14 7 1.7066 -0.2498 2.4547 15 6 2.1953 -0.9400 3.6508 16 1 2.2295 -2.0129 3.4615 17 6 3.6007 -0.4396 3.9881 18 6 4.1484 -1.2268 5.1832 19 6 3.1590 -1.1211 6.3227 20 6 3.5678 -0.7303 7.5800 21 7 4.8322 -0.4433 7.8008 22 14 2.3260 -0.6086 8.9702 23 1 1.7006 -1.9369 9.1930 24 1 3.0136 -0.1701 10.2113 25 1 1.2764 0.3787 8.6112 26 6 1.7097 -1.4558 6.0474 27 6 1.2505 -0.6602 4.8209 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2491 -1.6319 -1.1524 32 1 1.2578 0.0607 -4.8821 33 1 2.6521 0.9598 -4.7650 34 1 4.6127 0.1593 -3.5692 35 1 4.4671 -1.3227 -2.5940 36 1 5.6025 -1.7233 -4.6568 37 1 1.1492 0.5390 2.5435 38 1 3.5588 0.6202 4.2393 39 1 4.2542 -0.5838 3.1277 40 1 5.1063 -0.8072 5.4901 41 1 4.2760 -2.2730 4.9051 42 1 5.1199 -0.1687 8.6855 43 1 1.6117 -2.5231 5.8492 44 1 1.1009 -1.1832 6.9095 45 1 0.2383 -0.9608 4.5507 46 1 1.2642 0.4048 5.0524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220097418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:06 Heat of formation + Delta-G solvation = -142.432663 kcal Electronic energy + Delta-G solvation = -26628.217262 eV Core-core repulsion = 22744.727987 eV Total energy + Delta-G solvation = -3883.489275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.71702 -39.55622 -37.33171 -36.94982 -35.24401 -34.24836 -33.92796 -31.96428 -30.81008 -29.70677 -28.24879 -27.35350 -25.06052 -23.41719 -21.99158 -21.66725 -20.58248 -20.11720 -19.63049 -18.50707 -17.26744 -17.13792 -16.60908 -16.27464 -15.91228 -15.65398 -15.19926 -15.07359 -14.54189 -14.47177 -14.23857 -13.78763 -13.64895 -13.29893 -13.01723 -12.95310 -12.78996 -12.61524 -12.21385 -12.14881 -11.89564 -11.70090 -11.46513 -11.13096 -10.88728 -10.79848 -10.68619 -10.42823 -10.38199 -10.02081 -9.86157 -9.75602 -9.46523 -9.19516 -9.12925 -8.91108 -8.53814 -8.43201 -6.15988 -4.08022 2.10419 2.61539 2.67037 3.22471 3.30232 3.30800 3.38993 3.87165 4.10509 4.31963 4.47660 4.62388 4.67213 4.77324 4.81872 4.90676 5.10764 5.12760 5.28596 5.29021 5.47399 5.56509 5.76809 5.81760 6.01464 6.04927 6.35937 6.38758 6.57297 6.58878 6.65689 6.69755 6.89255 6.99211 7.00597 7.10805 7.14768 7.29675 7.30731 7.56458 7.62527 7.71070 7.79093 7.81499 8.29601 8.32299 8.90299 9.47580 10.93592 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.027537 B = 0.002600 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.587240 B =10765.344533 C =11388.301831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 H 0.112 0.888 4 N -0.704 5.704 5 C 0.486 3.514 6 O -0.543 6.543 7 C 0.078 3.922 8 H 0.112 0.888 9 N -0.809 5.809 10 C 0.091 3.909 11 O -0.557 6.557 12 C 0.507 3.493 13 O -0.539 6.539 14 N -0.716 5.716 15 C 0.154 3.846 16 H 0.080 0.920 17 C -0.114 4.114 18 C 0.013 3.987 19 C -0.493 4.493 20 C 0.077 3.923 21 N -0.888 5.888 22 Si 0.891 3.109 23 H -0.274 1.274 24 H -0.292 1.292 25 H -0.274 1.274 26 C -0.007 4.007 27 C -0.114 4.114 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.412 0.588 32 H 0.345 0.655 33 H 0.349 0.651 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.381 0.619 37 H 0.396 0.604 38 H 0.050 0.950 39 H 0.034 0.966 40 H 0.059 0.941 41 H 0.006 0.994 42 H 0.266 0.734 43 H 0.021 0.979 44 H 0.028 0.972 45 H 0.039 0.961 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 1.228 -18.904 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 H 0.130 0.870 4 N -0.358 5.358 5 C 0.269 3.731 6 O -0.420 6.420 7 C -0.038 4.038 8 H 0.130 0.870 9 N -0.338 5.338 10 C 0.012 3.988 11 O -0.362 6.362 12 C 0.291 3.709 13 O -0.417 6.417 14 N -0.365 5.365 15 C 0.052 3.948 16 H 0.098 0.902 17 C -0.153 4.153 18 C -0.025 4.025 19 C -0.512 4.512 20 C -0.126 4.126 21 N -0.525 5.525 22 Si 0.719 3.281 23 H -0.200 1.200 24 H -0.218 1.218 25 H -0.200 1.200 26 C -0.045 4.045 27 C -0.152 4.152 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.250 0.750 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.228 0.772 37 H 0.229 0.771 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.024 0.976 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.456 0.831 -19.411 20.473 hybrid contribution -0.703 0.873 1.868 2.178 sum -7.159 1.704 -17.543 19.024 Atomic orbital electron populations 1.22107 0.92802 1.03189 1.03501 1.20865 0.95723 0.98215 0.84131 0.86983 1.45921 1.66273 1.15109 1.08458 1.21935 0.77953 0.87810 0.85355 1.90715 1.50668 1.15705 1.84879 1.21515 0.96482 0.99364 0.86465 0.87003 1.59038 1.16701 1.22239 1.35803 1.21934 0.91720 0.95522 0.89635 1.86525 1.27263 1.74362 1.48012 1.20397 0.80716 0.84924 0.84877 1.90700 1.37981 1.26466 1.86521 1.46361 1.52524 1.31659 1.05963 1.21111 0.95128 0.96778 0.81827 0.90218 1.21970 0.93862 1.00535 0.98947 1.19338 0.97957 0.94304 0.90920 1.20023 0.91435 1.45059 0.94660 1.24851 0.95221 0.94557 0.97981 1.69827 1.15088 1.45017 1.22581 0.86660 0.81275 0.78796 0.81337 1.19975 1.21809 1.20004 1.19573 0.96631 0.95533 0.92772 1.21869 0.95703 1.01393 0.96255 0.91109 0.91653 0.90713 0.75036 0.84201 0.83643 0.93015 0.92285 0.77207 0.77082 0.93165 0.94747 0.92285 0.97597 0.92442 0.96073 0.95309 0.94279 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.38 37.16 0.35 -1.07 16 2 C 0.12 1.32 2.98 -69.08 -0.21 1.12 16 3 H 0.11 1.29 7.58 -51.93 -0.39 0.89 16 4 N -0.70 -7.31 4.95 -54.93 -0.27 -7.58 16 5 C 0.49 5.11 7.03 -10.99 -0.08 5.03 16 6 O -0.54 -7.16 15.91 5.56 0.09 -7.07 16 7 C 0.08 0.69 3.43 -68.86 -0.24 0.45 16 8 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 9 N -0.81 -7.18 8.93 -5.65 -0.05 -7.23 16 10 C 0.09 0.77 6.62 37.16 0.25 1.02 16 11 O -0.56 -4.84 13.61 -35.23 -0.48 -5.32 16 12 C 0.51 7.21 7.18 -10.98 -0.08 7.13 16 13 O -0.54 -9.50 15.50 5.55 0.09 -9.41 16 14 N -0.72 -10.17 4.97 -53.85 -0.27 -10.44 16 15 C 0.15 2.81 2.35 -67.98 -0.16 2.65 16 16 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 17 C -0.11 -2.40 5.50 -26.64 -0.15 -2.55 16 18 C 0.01 0.31 5.97 -27.48 -0.16 0.15 16 19 C -0.49 -12.58 5.51 -98.92 -0.55 -13.12 16 20 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 21 N -0.89 -25.13 12.73 55.43 0.71 -24.42 16 22 Si 0.89 20.60 26.80 -169.99 -4.56 16.04 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 C -0.01 -0.15 5.59 -27.48 -0.15 -0.31 16 27 C -0.11 -2.07 5.40 -26.63 -0.14 -2.22 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 31 H 0.41 4.11 7.79 -40.82 -0.32 3.79 16 32 H 0.35 2.70 9.06 -39.29 -0.36 2.35 16 33 H 0.35 3.15 8.58 -39.29 -0.34 2.81 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.38 1.67 9.12 45.56 0.42 2.09 16 37 H 0.40 4.49 8.02 -40.82 -0.33 4.16 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.60 7.07 -51.93 -0.37 1.24 16 41 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.03 0.62 5.17 -51.93 -0.27 0.35 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -32.16 372.54 -7.07 -39.23 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.52 Total: 10.35 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.41 Total: 0.24 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.12 Total: -49.67 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.30 Total: -21.80 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.56 Total: 16.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.16 -7.07 -39.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220097418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.200 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds