Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47170 * 2 1 4 4 N 1.46498 * 109.47581 * 239.99501 * 2 1 3 5 5 C 1.34772 * 119.99961 * 84.99572 * 4 2 1 6 6 O 1.21283 * 120.00068 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99971 * 179.97438 * 5 4 2 8 8 H 1.09003 * 109.46956 * 40.00838 * 7 5 4 9 9 N 1.46900 * 109.46864 * 160.00514 * 7 5 4 10 10 C 1.53000 * 109.47274 * 280.00529 * 7 5 4 11 11 O 1.42902 * 109.46808 * 174.99951 * 10 7 5 12 12 C 1.50704 * 109.46753 * 119.99491 * 2 1 3 13 13 O 1.21284 * 120.00014 * 120.00170 * 12 2 1 14 14 N 1.34776 * 120.00282 * 300.00401 * 12 2 1 15 15 C 1.46491 * 120.00197 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.41326 * 324.85352 * 15 14 12 17 17 C 1.52951 * 109.41713 * 84.64383 * 15 14 12 18 18 C 1.53228 * 109.40999 * 183.70456 * 17 15 14 19 19 C 1.51276 * 108.53512 * 305.37424 * 18 17 15 20 20 C 1.37871 * 120.84883 * 231.32177 * 19 18 17 21 21 N 1.31521 * 120.00151 * 0.02562 * 20 19 18 22 22 Si 1.86802 * 119.99997 * 180.02562 * 20 19 18 23 23 H 1.48499 * 109.47145 * 60.00080 * 22 20 19 24 24 H 1.48508 * 109.47233 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46974 * 299.99970 * 22 20 19 26 26 C 1.51269 * 118.29876 * 51.34590 * 19 18 17 27 27 C 1.52963 * 109.41344 * 204.99903 * 15 14 12 28 28 H 1.08997 * 109.46882 * 60.00746 * 1 2 3 29 29 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47480 * 300.00296 * 1 2 3 31 31 H 0.97003 * 119.99855 * 265.00760 * 4 2 1 32 32 H 1.00897 * 111.00358 * 296.04693 * 9 7 5 33 33 H 1.00906 * 110.99787 * 60.00915 * 9 7 5 34 34 H 1.09000 * 109.47188 * 295.00172 * 10 7 5 35 35 H 1.09004 * 109.46942 * 55.00567 * 10 7 5 36 36 H 0.96704 * 113.99860 * 180.02562 * 11 10 7 37 37 H 0.96998 * 119.99487 * 359.97438 * 14 12 2 38 38 H 1.08999 * 109.48657 * 63.72470 * 17 15 14 39 39 H 1.09003 * 109.48507 * 303.68491 * 17 15 14 40 40 H 1.08991 * 109.63157 * 185.65714 * 18 17 15 41 41 H 1.09003 * 109.62578 * 65.08228 * 18 17 15 42 42 H 0.97003 * 119.99821 * 180.02562 * 21 20 19 43 43 H 1.08995 * 109.62532 * 68.36794 * 26 19 18 44 44 H 1.09001 * 109.62320 * 188.93834 * 26 19 18 45 45 H 1.08997 * 109.48191 * 56.31295 * 27 15 14 46 46 H 1.08998 * 109.47929 * 296.27405 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8590 1.1584 -2.4116 7 6 2.6501 -0.7288 -3.5873 8 1 2.2159 -1.7276 -3.6332 9 7 2.2615 0.0296 -4.7839 10 6 4.1750 -0.8380 -3.5256 11 8 4.6422 -1.6122 -4.6321 12 6 2.0323 -0.7103 1.2306 13 8 2.7295 -1.6964 1.1194 14 7 1.7066 -0.2498 2.4547 15 6 2.1953 -0.9400 3.6508 16 1 2.2295 -2.0129 3.4615 17 6 3.6007 -0.4396 3.9881 18 6 4.1484 -1.2268 5.1832 19 6 3.1590 -1.1211 6.3227 20 6 3.5678 -0.7303 7.5800 21 7 4.8322 -0.4433 7.8008 22 14 2.3260 -0.6086 8.9702 23 1 1.7006 -1.9369 9.1930 24 1 3.0136 -0.1701 10.2113 25 1 1.2764 0.3787 8.6112 26 6 1.7097 -1.4558 6.0474 27 6 1.2505 -0.6602 4.8209 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2491 -1.6319 -1.1524 32 1 1.2578 0.0607 -4.8821 33 1 2.6521 0.9598 -4.7650 34 1 4.6127 0.1593 -3.5692 35 1 4.4671 -1.3227 -2.5940 36 1 5.6025 -1.7233 -4.6568 37 1 1.1492 0.5390 2.5435 38 1 3.5588 0.6202 4.2393 39 1 4.2542 -0.5838 3.1277 40 1 5.1063 -0.8072 5.4901 41 1 4.2760 -2.2730 4.9051 42 1 5.1199 -0.1687 8.6855 43 1 1.6117 -2.5231 5.8492 44 1 1.1009 -1.1832 6.9095 45 1 0.2383 -0.9608 4.5507 46 1 1.2642 0.4048 5.0524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220097418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -171.515655 kcal Electronic energy + Delta-G solvation = -26629.478395 eV Core-core repulsion = 22744.727987 eV Total energy + Delta-G solvation = -3884.750409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68781 -40.66581 -38.59566 -37.91889 -36.20174 -35.48331 -34.97083 -33.58202 -31.87534 -31.44932 -29.14177 -28.80013 -25.96847 -24.49698 -23.61672 -23.24091 -21.42051 -21.39522 -21.13689 -19.37550 -18.32978 -17.97354 -17.81115 -17.41099 -17.12124 -16.70098 -16.38433 -16.14521 -15.94608 -15.60066 -15.13492 -14.99116 -14.81978 -14.59520 -14.38975 -14.11409 -13.96322 -13.70016 -13.61056 -13.41128 -13.36326 -12.81059 -12.75586 -12.64197 -12.54365 -12.13493 -12.06810 -11.83666 -11.54674 -11.48745 -11.16351 -11.02154 -10.84882 -10.70993 -10.55186 -10.32513 -9.94545 -9.87196 -8.17491 -6.13236 1.27589 1.41118 1.42712 1.50425 1.51412 1.73135 2.31474 2.40671 3.10622 3.18458 3.45360 3.54369 3.80555 3.98554 4.00191 4.01788 4.05119 4.15884 4.21778 4.47942 4.48962 4.60658 4.63264 4.69774 4.74385 4.84976 4.96681 5.01601 5.09138 5.13891 5.18659 5.20578 5.22021 5.54275 5.56439 5.65288 5.74504 5.80410 5.90361 6.30537 6.31889 6.36491 6.51784 6.86873 6.93330 6.96385 7.16986 7.45346 8.93908 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.027537 B = 0.002600 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.587240 B =10765.344533 C =11388.301831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 H 0.113 0.887 4 N -0.702 5.702 5 C 0.492 3.508 6 O -0.569 6.569 7 C 0.081 3.919 8 H 0.122 0.878 9 N -0.811 5.811 10 C 0.092 3.908 11 O -0.572 6.572 12 C 0.509 3.491 13 O -0.574 6.574 14 N -0.705 5.705 15 C 0.167 3.833 16 H 0.062 0.938 17 C -0.103 4.103 18 C 0.010 3.990 19 C -0.502 4.502 20 C 0.020 3.980 21 N -0.934 5.934 22 Si 0.948 3.052 23 H -0.266 1.266 24 H -0.298 1.298 25 H -0.256 1.256 26 C -0.013 4.013 27 C -0.105 4.105 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.415 0.585 32 H 0.351 0.649 33 H 0.348 0.652 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.414 0.586 38 H 0.047 0.953 39 H 0.028 0.972 40 H 0.023 0.977 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.022 0.978 44 H 0.036 0.964 45 H 0.076 0.924 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 1.599 -19.859 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 H 0.130 0.870 4 N -0.355 5.355 5 C 0.276 3.724 6 O -0.448 6.448 7 C -0.035 4.035 8 H 0.140 0.860 9 N -0.340 5.340 10 C 0.013 3.987 11 O -0.380 6.380 12 C 0.295 3.705 13 O -0.454 6.454 14 N -0.355 5.355 15 C 0.063 3.937 16 H 0.080 0.920 17 C -0.142 4.142 18 C -0.028 4.028 19 C -0.521 4.521 20 C -0.178 4.178 21 N -0.574 5.574 22 Si 0.774 3.226 23 H -0.192 1.192 24 H -0.225 1.225 25 H -0.181 1.181 26 C -0.051 4.051 27 C -0.143 4.143 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.253 0.747 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.248 0.752 37 H 0.251 0.749 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.154 1.209 -20.394 22.386 hybrid contribution 0.229 0.694 2.084 2.208 sum -8.925 1.903 -18.310 20.458 Atomic orbital electron populations 1.22090 0.90693 1.03674 1.04479 1.20823 0.97166 0.97471 0.82655 0.86965 1.45953 1.66088 1.15222 1.08279 1.22192 0.77214 0.87380 0.85597 1.90703 1.51929 1.16870 1.85293 1.21542 0.96856 0.99538 0.85543 0.86017 1.59060 1.17206 1.22183 1.35594 1.21901 0.91422 0.95531 0.89815 1.86472 1.29123 1.74322 1.48062 1.20914 0.79743 0.84361 0.85527 1.90695 1.39458 1.28169 1.87043 1.46040 1.52594 1.32073 1.04823 1.20656 0.93483 0.95947 0.83586 0.92019 1.21766 0.95854 0.99635 0.96896 1.19279 0.96900 0.93757 0.92914 1.20642 0.93530 1.43504 0.94468 1.25689 0.96704 0.94874 1.00574 1.69991 1.17206 1.47288 1.22915 0.85730 0.79369 0.79383 0.78134 1.19150 1.22540 1.18092 1.19619 0.94298 0.96235 0.94947 1.21732 0.97283 1.01130 0.94197 0.91015 0.91395 0.88875 0.74692 0.83597 0.83795 0.93162 0.91903 0.75189 0.74900 0.93417 0.95322 0.95860 0.98978 0.92814 0.95973 0.94550 0.90509 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.38 71.98 0.68 -1.58 16 2 C 0.13 2.54 2.98 44.25 0.13 2.68 16 3 H 0.11 2.32 7.58 -2.39 -0.02 2.30 16 4 N -0.70 -13.42 4.95 -446.10 -2.21 -15.63 16 5 C 0.49 9.61 7.03 87.66 0.62 10.23 16 6 O -0.57 -14.21 15.91 -3.04 -0.05 -14.26 16 7 C 0.08 1.33 3.43 44.17 0.15 1.48 16 8 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 9 N -0.81 -13.37 8.93 -171.79 -1.53 -14.90 16 10 C 0.09 1.45 6.62 71.98 0.48 1.93 16 11 O -0.57 -9.16 13.61 -148.98 -2.03 -11.19 16 12 C 0.51 13.48 7.18 87.66 0.63 14.11 16 13 O -0.57 -19.64 15.50 -3.04 -0.05 -19.69 16 14 N -0.70 -18.16 4.97 -442.68 -2.20 -20.36 16 15 C 0.17 5.81 2.35 44.96 0.11 5.92 16 16 H 0.06 2.41 7.58 -2.39 -0.02 2.40 16 17 C -0.10 -4.31 5.50 30.65 0.17 -4.15 16 18 C 0.01 0.49 5.97 30.11 0.18 0.67 16 19 C -0.50 -25.69 5.51 -16.17 -0.09 -25.78 16 20 C 0.02 1.06 5.46 84.65 0.46 1.52 16 21 N -0.93 -54.64 12.73 21.45 0.27 -54.37 16 22 Si 0.95 41.84 26.80 68.60 1.84 43.67 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 26 C -0.01 -0.54 5.59 30.11 0.17 -0.37 16 27 C -0.11 -3.49 5.40 30.66 0.17 -3.33 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.05 7.56 -2.39 -0.02 1.04 16 31 H 0.42 7.67 7.79 -92.71 -0.72 6.95 16 32 H 0.35 5.02 9.06 -89.70 -0.81 4.21 16 33 H 0.35 5.93 8.58 -89.69 -0.77 5.16 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.40 2.98 9.12 -74.05 -0.68 2.30 16 37 H 0.41 7.84 8.02 -92.71 -0.74 7.09 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.02 1.32 7.07 -2.39 -0.02 1.30 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.04 1.46 5.17 -2.39 -0.01 1.44 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -70.42 372.54 -4.78 -75.21 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -2.67 Total: 28.18 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 3.84 Total: 3.33 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -5.67 Total: -105.26 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -2.12 Total: -45.13 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.84 Total: 43.67 kcal Total: -70.42 -4.78 -75.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220097418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.309 kcal (2) G-P(sol) polarization free energy of solvation -70.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds