Wall clock time and date at job start Fri Apr 10 2020 18:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46933 * 2 1 4 4 C 1.52998 * 109.47325 * 120.00259 * 2 1 3 5 5 C 1.52998 * 109.46902 * 174.55900 * 4 2 1 6 6 H 1.09004 * 109.47210 * 54.30855 * 5 4 2 7 7 C 1.50694 * 109.47399 * 294.30509 * 5 4 2 8 8 N 1.34768 * 120.00404 * 144.18226 * 7 5 4 9 9 O 1.21285 * 119.99862 * 324.18335 * 7 5 4 10 10 C 1.50706 * 109.47128 * 174.30356 * 5 4 2 11 11 O 1.21286 * 119.99702 * 359.97438 * 10 5 4 12 12 N 1.34770 * 119.99947 * 180.02562 * 10 5 4 13 13 C 1.46505 * 119.99917 * 180.02562 * 12 10 5 14 14 H 1.08999 * 110.63936 * 31.85110 * 13 12 10 15 15 C 1.54326 * 110.86658 * 268.60978 * 13 12 10 16 16 N 1.47297 * 107.30336 * 219.37791 * 15 13 12 17 17 C 1.36933 * 125.79209 * 178.92156 * 16 15 13 18 18 H 1.07998 * 120.00204 * 0.03443 * 17 16 15 19 19 C 1.38812 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00533 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47119 * 89.99842 * 21 19 17 23 23 H 1.48497 * 109.47419 * 210.00378 * 21 19 17 24 24 H 1.48506 * 109.46720 * 330.00339 * 21 19 17 25 25 C 1.47419 * 108.55729 * 358.93090 * 16 15 13 26 26 C 1.54913 * 104.93299 * 24.14974 * 25 16 15 27 27 H 1.08991 * 111.00726 * 204.86483 * 26 25 16 28 28 O 1.42899 * 111.00291 * 81.00886 * 26 25 16 29 29 H 1.09001 * 109.46983 * 299.99330 * 1 2 3 30 30 H 1.08993 * 109.47470 * 59.99969 * 1 2 3 31 31 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46983 * 240.00670 * 2 1 3 33 33 H 1.09002 * 109.47204 * 59.99911 * 3 2 1 34 34 H 1.08994 * 109.47672 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47327 * 300.00510 * 3 2 1 36 36 H 1.09000 * 109.47247 * 54.55937 * 4 2 1 37 37 H 1.09008 * 109.46980 * 294.55844 * 4 2 1 38 38 H 0.96998 * 120.00195 * 5.01036 * 8 7 5 39 39 H 0.97003 * 120.00165 * 185.01023 * 8 7 5 40 40 H 0.97001 * 120.00535 * 0.02562 * 12 10 5 41 41 H 1.08992 * 109.88562 * 338.78546 * 15 13 12 42 42 H 1.08999 * 109.88382 * 99.80165 * 15 13 12 43 43 H 0.97000 * 120.00201 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.36944 * 265.25744 * 25 16 15 45 45 H 1.09002 * 110.36818 * 143.04727 * 25 16 15 46 46 H 0.96702 * 113.99656 * 61.45714 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5639 -0.8408 1.1826 6 1 3.9996 0.1469 1.0309 7 6 3.9477 -1.7405 0.0362 8 7 5.0580 -1.4806 -0.6820 9 8 3.2572 -2.6985 -0.2402 10 6 4.0790 -1.4241 2.4732 11 8 3.3035 -1.7151 3.3592 12 7 5.4013 -1.6214 2.6431 13 6 5.9019 -2.1890 3.8975 14 1 5.1750 -2.8806 4.3235 15 6 6.2498 -1.0734 4.9055 16 7 7.4853 -1.4781 5.5978 17 6 8.1405 -0.7526 6.5567 18 1 7.7540 0.2074 6.8655 19 6 9.3013 -1.2511 7.1320 20 7 9.7725 -2.4210 6.7554 21 14 10.1947 -0.2618 8.4406 22 1 9.6698 -0.6262 9.7810 23 1 11.6482 -0.5598 8.3802 24 1 9.9761 1.1874 8.2007 25 6 7.8999 -2.7967 5.0853 26 6 7.2659 -2.8943 3.6752 27 1 7.1246 -3.9343 3.3814 28 8 8.0533 -2.1939 2.7101 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4427 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.5994 -1.7170 1.2992 37 1 1.7585 -0.1543 2.1366 38 1 5.6491 -0.7585 -0.4170 39 1 5.2662 -2.0156 -1.4639 40 1 6.0216 -1.3876 1.9350 41 1 6.4122 -0.1339 4.3773 42 1 5.4396 -0.9584 5.6255 43 1 10.5838 -2.7692 7.1571 44 1 7.5191 -3.5905 5.7281 45 1 8.9864 -2.8529 5.0175 46 1 8.9506 -2.5400 2.6087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221196297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:29 Heat of formation + Delta-G solvation = -111.776193 kcal Electronic energy + Delta-G solvation = -27434.662253 eV Core-core repulsion = 23552.502342 eV Total energy + Delta-G solvation = -3882.159911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74396 -39.08125 -37.86047 -36.47574 -34.75727 -34.25302 -33.75374 -31.91971 -31.18404 -28.56588 -27.38566 -27.12369 -25.24016 -24.29307 -22.12891 -20.77868 -20.44206 -19.87747 -19.63445 -17.87344 -17.35061 -17.27120 -16.87503 -16.65713 -15.62354 -15.18333 -14.95898 -14.68147 -14.54424 -14.26276 -14.16591 -13.90591 -13.54300 -13.17406 -12.99902 -12.77715 -12.50134 -12.43265 -12.31183 -11.81179 -11.78696 -11.39213 -11.14268 -11.05960 -10.89679 -10.83372 -10.81671 -10.67724 -10.38688 -10.24401 -10.07106 -9.95515 -9.88068 -9.71721 -9.29913 -8.79368 -8.72616 -6.90065 -5.73582 -3.13696 2.22530 2.61740 3.16723 3.36832 3.41883 3.42420 3.44006 4.36390 4.41976 4.49778 4.63650 4.67738 4.76881 4.92223 4.97105 5.16686 5.30820 5.33585 5.43914 5.45100 5.50636 5.62709 5.65436 5.67566 5.78608 5.85232 5.88148 6.00810 6.03542 6.18249 6.22498 6.23851 6.44457 6.51618 6.64292 6.86328 7.01489 7.21419 7.50611 7.63456 7.69782 7.97064 8.05498 8.26080 8.31101 9.13594 9.74367 10.37893 11.31516 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.003142 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.163483 B = 8910.200335 C = 9446.621683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.086 4.086 5 C -0.132 4.132 6 H 0.117 0.883 7 C 0.531 3.469 8 N -0.853 5.853 9 O -0.528 6.528 10 C 0.522 3.478 11 O -0.526 6.526 12 N -0.705 5.705 13 C 0.141 3.859 14 H 0.103 0.897 15 C 0.131 3.869 16 N -0.596 5.596 17 C -0.217 4.217 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.927 5.927 21 Si 0.917 3.083 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.126 3.874 26 C 0.068 3.932 27 H 0.059 0.941 28 O -0.564 6.564 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.403 0.597 39 H 0.404 0.596 40 H 0.405 0.595 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.252 0.748 44 H 0.023 0.977 45 H 0.116 0.884 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 4.156 -17.146 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.124 4.124 5 C -0.156 4.156 6 H 0.135 0.865 7 C 0.314 3.686 8 N -0.417 5.417 9 O -0.403 6.403 10 C 0.305 3.695 11 O -0.402 6.402 12 N -0.357 5.357 13 C 0.036 3.964 14 H 0.121 0.879 15 C 0.004 3.996 16 N -0.323 5.323 17 C -0.345 4.345 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.748 3.252 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.000 4.000 26 C 0.007 3.993 27 H 0.076 0.924 28 O -0.370 6.370 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.232 0.768 39 H 0.235 0.765 40 H 0.240 0.760 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.134 0.866 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -11.046 3.713 -16.435 20.147 hybrid contribution 1.804 0.427 0.272 1.873 sum -9.242 4.140 -16.163 19.074 Atomic orbital electron populations 1.21781 0.94701 1.02028 1.01650 1.21169 0.96450 0.96016 0.98185 1.21946 1.00821 0.96068 1.02059 1.21385 0.89624 1.02950 0.98453 1.21670 1.01042 1.00391 0.92525 0.86509 1.20111 0.80590 0.84971 0.82924 1.43919 1.26220 1.39052 1.32517 1.90766 1.52087 1.28635 1.68786 1.19934 0.82741 0.78741 0.88041 1.90724 1.55911 1.50281 1.43254 1.45829 1.06620 1.64204 1.19001 1.22196 0.93891 0.96050 0.84265 0.87946 1.21630 0.89958 0.95006 0.92995 1.44342 1.24519 1.18791 1.44629 1.19095 1.03892 1.00043 1.11455 0.90368 1.24763 0.98334 0.97223 1.00416 1.69712 1.23902 1.18458 1.45562 0.86024 0.78829 0.79082 0.81286 1.21600 1.21656 1.20683 1.22626 1.02710 0.87213 0.87431 1.23574 0.90549 0.93043 0.92126 0.92351 1.86173 1.28594 1.61467 1.60771 0.92478 0.92790 0.92440 0.91306 0.92231 0.92786 0.92664 0.89761 0.89851 0.76837 0.76478 0.75983 0.95218 0.95299 0.93683 0.95921 0.86650 0.77114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.10 -0.92 2.82 -90.62 -0.26 -1.18 16 3 C -0.15 -1.15 8.96 37.16 0.33 -0.82 16 4 C -0.09 -1.00 3.28 -26.73 -0.09 -1.08 16 5 C -0.13 -1.49 2.40 -92.92 -0.22 -1.72 16 6 H 0.12 0.97 6.32 -51.93 -0.33 0.65 16 7 C 0.53 6.08 5.83 -10.99 -0.06 6.02 16 8 N -0.85 -6.18 8.87 31.22 0.28 -5.91 16 9 O -0.53 -8.18 16.93 5.55 0.09 -8.09 16 10 C 0.52 7.99 7.14 -10.99 -0.08 7.91 16 11 O -0.53 -9.98 15.55 5.55 0.09 -9.89 16 12 N -0.71 -10.63 4.98 -52.03 -0.26 -10.89 16 13 C 0.14 2.59 3.19 -66.09 -0.21 2.37 16 14 H 0.10 1.97 7.55 -51.93 -0.39 1.58 16 15 C 0.13 2.83 7.01 -2.91 -0.02 2.81 16 16 N -0.60 -15.01 3.40 -169.85 -0.58 -15.59 16 17 C -0.22 -5.97 10.28 -15.06 -0.15 -6.12 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 20 N -0.93 -26.05 10.09 55.49 0.56 -25.49 16 21 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.13 2.89 5.62 -2.53 -0.01 2.87 16 26 C 0.07 1.21 4.28 -24.58 -0.11 1.10 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.56 -9.03 12.25 -35.23 -0.43 -9.46 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.69 7.18 -51.93 -0.37 0.32 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.36 6.46 -51.93 -0.34 0.03 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 1.17 7.66 -51.93 -0.40 0.77 16 37 H 0.08 0.99 7.93 -51.92 -0.41 0.58 16 38 H 0.40 1.94 8.82 -40.82 -0.36 1.58 16 39 H 0.40 2.48 8.93 -40.82 -0.36 2.12 16 40 H 0.40 5.28 7.48 -40.82 -0.31 4.97 16 41 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.12 2.91 5.87 -51.93 -0.30 2.60 16 46 H 0.38 5.03 9.11 45.56 0.42 5.44 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -34.32 371.08 -6.82 -41.14 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.50 Total: 11.00 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -0.64 Total: 10.85 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.00 Total: -57.88 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.25 Total: -27.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.32 -6.82 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221196297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.637 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds