Wall clock time and date at job start Fri Apr 10 2020 18:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99577 * 2 1 4 4 H 1.09000 * 109.47490 * 330.00387 * 3 2 1 5 5 C 1.53006 * 109.46748 * 90.00295 * 3 2 1 6 6 C 1.50697 * 109.46831 * 210.00032 * 3 2 1 7 7 O 1.21278 * 120.00443 * 355.00284 * 6 3 2 8 8 N 1.34786 * 119.99896 * 175.00518 * 6 3 2 9 9 C 1.46492 * 120.00011 * 180.02562 * 8 6 3 10 10 C 1.53121 * 109.52321 * 274.86962 * 9 8 6 11 11 C 1.53045 * 109.27648 * 182.50360 * 10 9 8 12 12 N 1.46849 * 109.57482 * 59.08501 * 11 10 9 13 13 C 1.46894 * 111.00264 * 174.19484 * 12 11 10 14 14 C 1.50706 * 109.46884 * 294.20910 * 13 12 11 15 15 O 1.21289 * 119.99574 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99773 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99718 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00358 * 0.02562 * 17 16 14 19 19 C 1.38954 * 120.00354 * 180.02562 * 17 16 14 20 20 N 1.31419 * 119.99621 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00518 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46872 * 60.00136 * 21 19 17 23 23 H 1.48494 * 109.47314 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47156 * 300.00410 * 21 19 17 25 25 C 1.46854 * 111.19749 * 298.28895 * 12 11 10 26 26 C 1.53042 * 109.52119 * 61.74529 * 25 12 11 27 27 H 1.09000 * 109.46788 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46805 * 299.99656 * 1 2 3 29 29 H 1.09000 * 109.47333 * 59.99541 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 31 31 H 1.08993 * 109.46955 * 299.99993 * 5 3 2 32 32 H 1.09000 * 109.47050 * 59.99822 * 5 3 2 33 33 H 0.97000 * 119.99563 * 359.97438 * 8 6 3 34 34 H 1.09003 * 109.52357 * 34.99824 * 9 8 6 35 35 H 1.08993 * 109.50222 * 302.38493 * 10 9 8 36 36 H 1.09001 * 109.50006 * 62.50011 * 10 9 8 37 37 H 1.09001 * 109.41058 * 299.07058 * 11 10 9 38 38 H 1.09001 * 109.45736 * 179.12398 * 11 10 9 39 39 H 1.08998 * 109.47309 * 54.20368 * 13 12 11 40 40 H 1.09003 * 109.47293 * 174.21095 * 13 12 11 41 41 H 0.96994 * 120.00354 * 0.02562 * 16 14 13 42 42 H 0.96996 * 119.99756 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.46049 * 301.72740 * 25 12 11 44 44 H 1.09002 * 109.45090 * 181.75134 * 25 12 11 45 45 H 1.09000 * 109.49796 * 180.88268 * 26 25 12 46 46 H 1.08996 * 109.50428 * 60.75723 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9995 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 3.3385 1.2640 -0.7104 7 8 3.7897 0.2047 -1.0914 8 7 4.0254 2.4042 -0.9223 9 6 5.3164 2.3639 -1.6134 10 6 6.4274 2.0592 -0.6048 11 6 7.7798 2.0801 -1.3211 12 7 7.9936 3.3992 -1.9301 13 6 9.3401 3.5001 -2.5084 14 6 10.3661 3.4375 -1.4062 15 8 10.0104 3.3199 -0.2527 16 7 11.6787 3.5111 -1.7026 17 6 12.6120 3.4547 -0.7000 18 1 12.2954 3.3509 0.3274 19 6 13.9654 3.5312 -1.0053 20 7 14.3508 3.6571 -2.2554 21 14 15.2370 3.4551 0.3608 22 1 15.1056 2.1670 1.0881 23 1 16.5983 3.5562 -0.2238 24 1 15.0180 4.5808 1.3042 25 6 6.9653 3.6922 -2.9367 26 6 5.5888 3.7210 -2.2683 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 2.6613 2.7670 1.4426 31 1 1.2569 1.8013 1.9564 32 1 2.8829 1.0775 1.9564 33 1 3.6644 3.2515 -0.6179 34 1 5.2960 1.5878 -2.3785 35 1 6.4216 2.8134 0.1820 36 1 6.2616 1.0747 -0.1672 37 1 7.7902 1.3155 -2.0978 38 1 8.5744 1.8788 -0.6026 39 1 9.5007 2.6743 -3.2015 40 1 9.4367 4.4459 -3.0414 41 1 11.9631 3.6048 -2.6252 42 1 15.2955 3.7109 -2.4686 43 1 6.9795 2.9200 -3.7058 44 1 7.1684 4.6617 -3.3916 45 1 4.8243 3.9230 -3.0185 46 1 5.5695 4.5022 -1.5085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226310632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:34 Heat of formation + Delta-G solvation = -114.168018 kcal Electronic energy + Delta-G solvation = -26310.126465 eV Core-core repulsion = 22427.862837 eV Total energy + Delta-G solvation = -3882.263628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38748 -39.10576 -38.03166 -37.29664 -34.98126 -33.84345 -32.56313 -31.27692 -30.84098 -30.67414 -27.21573 -27.13965 -24.93862 -24.06418 -23.11302 -22.42744 -20.53613 -19.87926 -19.16215 -17.83499 -17.65922 -17.33632 -16.14169 -15.96562 -15.68351 -15.41039 -15.01352 -14.88728 -14.67460 -14.43951 -13.95003 -13.73957 -13.67157 -13.41001 -13.32374 -13.03462 -12.98671 -12.74266 -12.29679 -12.19207 -11.86737 -11.66121 -11.54497 -11.47645 -11.15146 -11.07006 -11.02666 -10.62358 -10.49536 -10.41932 -10.33468 -10.19073 -9.67103 -9.45284 -9.12682 -8.40674 -7.95237 -7.81398 -6.39368 -3.80018 2.43665 2.63115 3.21806 3.27322 3.31728 3.63710 3.92901 4.00900 4.26467 4.33970 4.49101 4.60675 4.68703 4.88668 4.92638 4.96709 5.05530 5.08724 5.14659 5.27507 5.29095 5.29676 5.36478 5.45583 5.57452 5.65388 5.71252 5.71718 5.82960 5.85305 5.99543 6.02262 6.13367 6.26747 6.32239 6.48552 6.56839 6.66069 7.28720 7.35286 7.45250 7.57330 8.06704 8.08805 8.64495 9.20522 9.57186 10.09160 10.78332 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.002269 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.116892 B =12335.282593 C =12850.260566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.085 0.915 5 C -0.171 4.171 6 C 0.512 3.488 7 O -0.517 6.517 8 N -0.723 5.723 9 C 0.144 3.856 10 C -0.120 4.120 11 C 0.055 3.945 12 N -0.516 5.516 13 C 0.046 3.954 14 C 0.444 3.556 15 O -0.577 6.577 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.058 3.942 26 C -0.119 4.119 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.399 0.601 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.023 0.977 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.608 0.251 -0.640 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.103 0.897 5 C -0.229 4.229 6 C 0.297 3.703 7 O -0.391 6.391 8 N -0.375 5.375 9 C 0.040 3.960 10 C -0.159 4.159 11 C -0.073 4.073 12 N -0.241 5.241 13 C -0.085 4.085 14 C 0.229 3.771 15 O -0.461 6.461 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.071 4.071 26 C -0.158 4.158 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.233 0.767 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.125 0.875 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.251 -0.437 0.143 25.255 hybrid contribution 0.553 0.141 -0.488 0.751 sum -24.698 -0.296 -0.345 24.702 Atomic orbital electron populations 1.22884 0.80658 1.03298 0.99966 1.88074 1.19606 1.25151 1.94925 1.21951 0.93556 0.86837 0.96854 0.89734 1.22234 1.03443 1.02248 0.94940 1.20373 0.86071 0.84302 0.79556 1.90739 1.69271 1.29642 1.49494 1.46033 1.21877 1.09165 1.60462 1.21140 0.81732 0.98391 0.94725 1.21915 0.93278 1.02270 0.98411 1.22218 0.98353 0.87984 0.98737 1.61543 1.00822 1.30787 1.30924 1.21833 0.88891 1.01735 0.96049 1.19747 0.83167 0.84408 0.89758 1.90481 1.79977 1.54689 1.20975 1.41862 1.04137 1.63986 1.10141 1.19643 0.85720 1.47091 0.90324 0.87982 1.25262 0.98090 0.97377 0.97276 1.69607 1.17294 1.50213 1.17270 0.85918 0.78934 0.79043 0.80319 1.19937 1.21020 1.19918 1.22030 0.91002 1.01047 0.93016 1.21829 0.96844 0.96648 1.00439 0.89119 0.93817 0.93874 0.90769 0.91247 0.90853 0.76741 0.89779 0.90689 0.91381 0.95833 0.87506 0.93454 0.89324 0.77500 0.91862 0.94975 0.90278 0.91193 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.94 9.89 -55.09 -0.54 -4.48 16 3 C 0.07 0.60 3.13 -27.88 -0.09 0.52 16 4 H 0.08 0.49 7.79 -51.93 -0.40 0.08 16 5 C -0.17 -1.17 9.48 37.16 0.35 -0.82 16 6 C 0.51 6.12 7.15 -10.98 -0.08 6.04 16 7 O -0.52 -8.76 16.17 -14.30 -0.23 -8.99 16 8 N -0.72 -6.98 5.04 -53.69 -0.27 -7.25 16 9 C 0.14 1.70 2.52 -67.81 -0.17 1.53 16 10 C -0.12 -1.74 5.68 -26.65 -0.15 -1.89 16 11 C 0.06 0.93 5.10 -3.83 -0.02 0.91 16 12 N -0.52 -8.47 4.40 -236.10 -1.04 -9.51 16 13 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 14 C 0.44 10.44 7.46 -10.98 -0.08 10.36 16 15 O -0.58 -15.42 13.90 5.55 0.08 -15.34 16 16 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 17 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 19 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 20 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 21 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 26 C -0.12 -1.21 5.57 -26.64 -0.15 -1.36 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 29 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 30 H 0.07 0.38 7.92 -51.93 -0.41 -0.03 16 31 H 0.07 0.36 7.87 -51.93 -0.41 -0.04 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 2.56 8.39 -40.82 -0.34 2.22 16 34 H 0.08 1.15 7.58 -51.93 -0.39 0.75 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.11 2.20 5.78 -51.93 -0.30 1.90 16 39 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 40 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -34.77 375.51 -7.84 -42.62 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.56 Total: 9.33 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 0.42 Total: 10.09 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.64 Total: -55.04 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.70 Total: -28.81 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.77 -7.84 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226310632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.550 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds