Wall clock time and date at job start Fri Apr 10 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99577 * 2 1 4 4 H 1.09000 * 109.47490 * 330.00387 * 3 2 1 5 5 C 1.53006 * 109.46748 * 90.00295 * 3 2 1 6 6 C 1.50697 * 109.46831 * 210.00032 * 3 2 1 7 7 O 1.21278 * 120.00443 * 355.00284 * 6 3 2 8 8 N 1.34786 * 119.99896 * 175.00518 * 6 3 2 9 9 C 1.46492 * 120.00011 * 180.02562 * 8 6 3 10 10 C 1.53121 * 109.52321 * 274.86962 * 9 8 6 11 11 C 1.53045 * 109.27648 * 182.50360 * 10 9 8 12 12 N 1.46849 * 109.57482 * 59.08501 * 11 10 9 13 13 C 1.46894 * 111.00264 * 174.19484 * 12 11 10 14 14 C 1.50706 * 109.46884 * 294.20910 * 13 12 11 15 15 O 1.21289 * 119.99574 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99773 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99718 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00358 * 0.02562 * 17 16 14 19 19 C 1.38954 * 120.00354 * 180.02562 * 17 16 14 20 20 N 1.31419 * 119.99621 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00518 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46872 * 60.00136 * 21 19 17 23 23 H 1.48494 * 109.47314 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47156 * 300.00410 * 21 19 17 25 25 C 1.46854 * 111.19749 * 298.28895 * 12 11 10 26 26 C 1.53042 * 109.52119 * 61.74529 * 25 12 11 27 27 H 1.09000 * 109.46788 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46805 * 299.99656 * 1 2 3 29 29 H 1.09000 * 109.47333 * 59.99541 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 31 31 H 1.08993 * 109.46955 * 299.99993 * 5 3 2 32 32 H 1.09000 * 109.47050 * 59.99822 * 5 3 2 33 33 H 0.97000 * 119.99563 * 359.97438 * 8 6 3 34 34 H 1.09003 * 109.52357 * 34.99824 * 9 8 6 35 35 H 1.08993 * 109.50222 * 302.38493 * 10 9 8 36 36 H 1.09001 * 109.50006 * 62.50011 * 10 9 8 37 37 H 1.09001 * 109.41058 * 299.07058 * 11 10 9 38 38 H 1.09001 * 109.45736 * 179.12398 * 11 10 9 39 39 H 1.08998 * 109.47309 * 54.20368 * 13 12 11 40 40 H 1.09003 * 109.47293 * 174.21095 * 13 12 11 41 41 H 0.96994 * 120.00354 * 0.02562 * 16 14 13 42 42 H 0.96996 * 119.99756 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.46049 * 301.72740 * 25 12 11 44 44 H 1.09002 * 109.45090 * 181.75134 * 25 12 11 45 45 H 1.09000 * 109.49796 * 180.88268 * 26 25 12 46 46 H 1.08996 * 109.50428 * 60.75723 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9995 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 3.3385 1.2640 -0.7104 7 8 3.7897 0.2047 -1.0914 8 7 4.0254 2.4042 -0.9223 9 6 5.3164 2.3639 -1.6134 10 6 6.4274 2.0592 -0.6048 11 6 7.7798 2.0801 -1.3211 12 7 7.9936 3.3992 -1.9301 13 6 9.3401 3.5001 -2.5084 14 6 10.3661 3.4375 -1.4062 15 8 10.0104 3.3199 -0.2527 16 7 11.6787 3.5111 -1.7026 17 6 12.6120 3.4547 -0.7000 18 1 12.2954 3.3509 0.3274 19 6 13.9654 3.5312 -1.0053 20 7 14.3508 3.6571 -2.2554 21 14 15.2370 3.4551 0.3608 22 1 15.1056 2.1670 1.0881 23 1 16.5983 3.5562 -0.2238 24 1 15.0180 4.5808 1.3042 25 6 6.9653 3.6922 -2.9367 26 6 5.5888 3.7210 -2.2683 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 2.6613 2.7670 1.4426 31 1 1.2569 1.8013 1.9564 32 1 2.8829 1.0775 1.9564 33 1 3.6644 3.2515 -0.6179 34 1 5.2960 1.5878 -2.3785 35 1 6.4216 2.8134 0.1820 36 1 6.2616 1.0747 -0.1672 37 1 7.7902 1.3155 -2.0978 38 1 8.5744 1.8788 -0.6026 39 1 9.5007 2.6743 -3.2015 40 1 9.4367 4.4459 -3.0414 41 1 11.9631 3.6048 -2.6252 42 1 15.2955 3.7109 -2.4686 43 1 6.9795 2.9200 -3.7058 44 1 7.1684 4.6617 -3.3916 45 1 4.8243 3.9230 -3.0185 46 1 5.5695 4.5022 -1.5085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226310632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:33 Heat of formation + Delta-G solvation = -141.776892 kcal Electronic energy + Delta-G solvation = -26311.323676 eV Core-core repulsion = 22427.862837 eV Total energy + Delta-G solvation = -3883.460839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34446 -40.49572 -39.27991 -38.39026 -36.23820 -35.72884 -33.53959 -33.19548 -31.82351 -31.75556 -28.66040 -27.68889 -26.48460 -25.18147 -24.23381 -23.52900 -21.46456 -21.05001 -20.87145 -19.86126 -18.49551 -18.09094 -17.68483 -17.03064 -16.68036 -16.53695 -16.41018 -16.21468 -15.81395 -15.66255 -15.38848 -15.32193 -14.91395 -14.44619 -14.36243 -14.23967 -13.76552 -13.60557 -13.48903 -13.33695 -13.17825 -12.94537 -12.79330 -12.75128 -12.43641 -12.32849 -12.18680 -12.11460 -12.09825 -11.85486 -11.55849 -11.42713 -11.04304 -10.51475 -10.29532 -10.07823 -9.96761 -9.20125 -8.45263 -5.93612 1.39889 1.41400 1.52328 1.53820 1.86036 2.07511 2.29071 2.77001 3.01590 3.21457 3.39028 3.60492 3.77708 3.86277 3.92369 4.04875 4.08166 4.20263 4.30458 4.37142 4.45656 4.48255 4.52980 4.55588 4.56856 4.63925 4.67055 4.75809 4.79776 4.86609 4.91342 4.99178 5.08510 5.12599 5.19592 5.30080 5.41791 5.46952 5.89593 6.07123 6.08904 6.25537 6.56458 6.62536 7.14542 7.22849 7.58570 8.14709 8.71908 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.002269 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.116892 B =12335.282593 C =12850.260566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.072 3.928 4 H 0.123 0.877 5 C -0.167 4.167 6 C 0.506 3.494 7 O -0.577 6.577 8 N -0.705 5.705 9 C 0.151 3.849 10 C -0.110 4.110 11 C 0.060 3.940 12 N -0.529 5.529 13 C 0.057 3.943 14 C 0.440 3.560 15 O -0.614 6.614 16 N -0.575 5.575 17 C -0.331 4.331 18 H 0.078 0.922 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.992 3.008 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.053 3.947 26 C -0.108 4.108 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.419 0.581 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.024 0.976 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.039 0.961 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.517 2.104 -1.333 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.320 6.320 3 C 0.011 3.989 4 H 0.140 0.860 5 C -0.224 4.224 6 C 0.293 3.707 7 O -0.455 6.455 8 N -0.358 5.358 9 C 0.046 3.954 10 C -0.149 4.149 11 C -0.068 4.068 12 N -0.254 5.254 13 C -0.074 4.074 14 C 0.228 3.772 15 O -0.499 6.499 16 N -0.213 5.213 17 C -0.461 4.461 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.074 4.074 26 C -0.146 4.146 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.256 0.744 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.197 1.468 -0.564 27.243 hybrid contribution 1.081 -0.457 -0.268 1.204 sum -26.117 1.011 -0.832 26.149 Atomic orbital electron populations 1.23089 0.78586 1.04087 1.01590 1.88026 1.22024 1.26717 1.95186 1.22086 0.92067 0.87009 0.97724 0.85978 1.22242 1.04207 1.02417 0.93577 1.21154 0.87161 0.83702 0.78693 1.90711 1.70911 1.31828 1.52070 1.45839 1.20726 1.09745 1.59492 1.20922 0.81636 0.99278 0.93529 1.21778 0.93340 1.01022 0.98791 1.22007 0.98094 0.88775 0.97950 1.61527 1.01105 1.30015 1.32750 1.21735 0.88037 1.03770 0.93861 1.20818 0.83493 0.82141 0.90774 1.90461 1.80626 1.55649 1.23214 1.41935 1.04692 1.64850 1.09816 1.19604 0.87111 1.49286 0.90089 0.90393 1.26033 0.99301 0.96432 0.99656 1.69669 1.17987 1.50037 1.18483 0.84998 0.76891 0.78862 0.77640 1.19934 1.19489 1.19622 1.22231 0.90564 1.02306 0.92320 1.21800 0.96433 0.95152 1.01245 0.88965 0.91803 0.92500 0.88790 0.89105 0.93490 0.74366 0.91507 0.91167 0.93361 0.95809 0.92018 0.91946 0.86502 0.77039 0.91357 0.94272 0.88073 0.87807 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.47 16 2 O -0.40 -8.45 9.89 -129.99 -1.29 -9.73 16 3 C 0.07 1.12 3.13 29.85 0.09 1.21 16 4 H 0.12 0.94 7.79 -2.39 -0.02 0.93 16 5 C -0.17 -1.94 9.48 71.98 0.68 -1.26 16 6 C 0.51 11.74 7.15 87.65 0.63 12.37 16 7 O -0.58 -20.13 16.17 15.97 0.26 -19.88 16 8 N -0.70 -12.31 5.04 -442.15 -2.23 -14.54 16 9 C 0.15 3.39 2.52 45.08 0.11 3.51 16 10 C -0.11 -3.27 5.68 30.65 0.17 -3.10 16 11 C 0.06 2.10 5.10 86.33 0.44 2.54 16 12 N -0.53 -16.84 4.40 -900.88 -3.96 -20.81 16 13 C 0.06 1.98 5.45 85.56 0.47 2.45 16 14 C 0.44 21.18 7.46 87.66 0.65 21.83 16 15 O -0.61 -34.11 13.90 -3.06 -0.04 -34.16 16 16 N -0.58 -29.87 5.29 -306.98 -1.62 -31.49 16 17 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 18 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 19 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 20 N -0.92 -50.19 13.05 21.67 0.28 -49.90 16 21 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 C 0.05 1.15 5.46 86.33 0.47 1.62 16 26 C -0.11 -1.83 5.57 30.65 0.17 -1.66 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.43 7.87 -2.39 -0.02 0.41 16 29 H 0.06 0.46 8.08 -2.39 -0.02 0.44 16 30 H 0.09 0.69 7.92 -2.39 -0.02 0.67 16 31 H 0.09 0.68 7.87 -2.39 -0.02 0.66 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.42 3.99 8.39 -92.71 -0.78 3.21 16 34 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 2.71 5.78 -2.39 -0.01 2.70 16 39 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 40 H 0.12 3.42 7.99 -2.39 -0.02 3.41 16 41 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 42 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 1.80 8.01 -2.39 -0.02 1.78 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -80.14 375.51 -0.69 -80.84 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.52 Total: 31.64 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 6.40 Total: 22.46 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -7.53 Total: -116.75 kcal Atomic # 8 Polarization: -62.70 SS G_CDS: -1.07 Total: -63.76 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -80.14 -0.69 -80.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226310632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.940 kcal (2) G-P(sol) polarization free energy of solvation -80.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds