Wall clock time and date at job start Fri Apr 10 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47486 * 2 1 4 4 O 1.42911 * 109.47259 * 120.00013 * 2 1 3 5 5 C 1.53007 * 109.47257 * 239.99653 * 2 1 3 6 6 H 1.08999 * 109.49434 * 300.06950 * 5 2 1 7 7 C 1.53034 * 109.49932 * 180.02562 * 5 2 1 8 8 C 1.53041 * 109.53897 * 178.68476 * 7 5 2 9 9 C 1.53192 * 109.31103 * 61.36503 * 8 7 5 10 10 N 1.46928 * 108.77502 * 305.36698 * 9 8 7 11 11 C 1.34778 * 120.63226 * 233.63150 * 10 9 8 12 12 O 1.21582 * 120.00384 * 174.77271 * 11 10 9 13 13 N 1.34785 * 119.99737 * 354.77198 * 11 10 9 14 14 C 1.46500 * 119.99945 * 184.98367 * 13 11 10 15 15 C 1.50697 * 109.47121 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99812 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99975 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99798 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00299 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99782 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99920 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99664 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47352 * 90.00697 * 22 20 18 24 24 H 1.48503 * 109.46910 * 210.00379 * 22 20 18 25 25 H 1.48500 * 109.47304 * 330.00065 * 22 20 18 26 26 C 1.46927 * 118.74034 * 53.60829 * 10 9 8 27 27 H 1.08992 * 109.47157 * 59.99900 * 1 2 3 28 28 H 1.09002 * 109.47606 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46888 * 300.00156 * 1 2 3 30 30 H 1.08997 * 109.46899 * 59.99920 * 3 2 1 31 31 H 1.08996 * 109.47161 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46850 * 299.99912 * 3 2 1 33 33 H 0.96694 * 113.99548 * 299.99879 * 4 2 1 34 34 H 1.09002 * 109.46169 * 298.70305 * 7 5 2 35 35 H 1.09001 * 109.46339 * 58.67631 * 7 5 2 36 36 H 1.09000 * 109.49755 * 181.31575 * 8 7 5 37 37 H 1.08998 * 109.49784 * 301.41460 * 8 7 5 38 38 H 1.09003 * 109.59126 * 65.15286 * 9 8 7 39 39 H 1.08997 * 109.58701 * 185.43923 * 9 8 7 40 40 H 0.97000 * 119.99838 * 4.98609 * 13 11 10 41 41 H 1.09001 * 109.47077 * 299.99924 * 14 13 11 42 42 H 1.08996 * 109.47206 * 60.00169 * 14 13 11 43 43 H 0.97001 * 120.00168 * 359.97438 * 17 15 14 44 44 H 0.97002 * 119.99797 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58669 * 186.60344 * 26 10 9 46 46 H 1.09001 * 109.58756 * 66.18064 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.0400 -0.7214 -1.2492 6 1 1.6759 -1.7487 -1.2502 7 6 3.5703 -0.7223 -1.2495 8 6 4.0815 -1.4721 -2.4819 9 6 3.5982 -0.7562 -3.7471 10 7 2.1363 -0.6223 -3.6854 11 6 1.3629 -1.0651 -4.6965 12 8 0.1518 -1.0357 -4.5934 13 7 1.9321 -1.5405 -5.8220 14 6 1.0946 -1.9197 -6.9626 15 6 1.9691 -2.4167 -8.0847 16 8 3.1736 -2.4504 -7.9455 17 7 1.4129 -2.8238 -9.2429 18 6 2.2086 -3.2755 -10.2639 19 1 3.2811 -3.3054 -10.1400 20 6 1.6352 -3.6956 -11.4578 21 7 0.3303 -3.6596 -11.6083 22 14 2.7193 -4.3117 -12.8487 23 1 2.9124 -5.7778 -12.7136 24 1 2.0696 -4.0159 -14.1509 25 1 4.0377 -3.6310 -12.7874 26 6 1.5335 0.0031 -2.5004 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.7210 -0.2701 1.9979 34 1 3.9341 0.3050 -1.2728 35 1 3.9334 -1.2157 -0.3480 36 1 5.1712 -1.4925 -2.4692 37 1 3.6978 -2.4923 -2.4721 38 1 4.0535 0.2325 -3.8041 39 1 3.8771 -1.3382 -4.6254 40 1 2.8963 -1.6317 -5.8766 41 1 0.4066 -2.7098 -6.6614 42 1 0.5269 -1.0529 -7.3006 43 1 0.4497 -2.7972 -9.3541 44 1 -0.0700 -3.9526 -12.4419 45 1 0.4480 -0.0793 -2.5561 46 1 1.8205 1.0537 -2.4557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227976580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:50 Heat of formation + Delta-G solvation = -121.877474 kcal Electronic energy + Delta-G solvation = -26743.243879 eV Core-core repulsion = 22860.645944 eV Total energy + Delta-G solvation = -3882.597936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62444 -39.18403 -38.16983 -36.73776 -34.51281 -33.85419 -33.23327 -32.37635 -31.36300 -29.69013 -27.88644 -27.58094 -25.28917 -24.37024 -23.92254 -21.58961 -20.03158 -19.65849 -19.17678 -18.37898 -17.82156 -16.89037 -16.27284 -15.65341 -15.60146 -15.37259 -14.91787 -14.68958 -14.52066 -14.29464 -14.15139 -14.05544 -13.85478 -13.53083 -13.28680 -13.16383 -12.92581 -12.30634 -12.21980 -12.03777 -11.96387 -11.89305 -11.84413 -11.62390 -11.18407 -11.12112 -10.96105 -10.87541 -10.48600 -10.45451 -10.31116 -10.13913 -9.91669 -9.62854 -8.91288 -8.61617 -8.42027 -8.09132 -6.50603 -3.92556 2.69352 3.12222 3.22540 3.27826 3.35548 3.75969 3.86710 3.99904 4.15663 4.36174 4.45347 4.62180 4.74558 4.84437 4.90910 4.93933 4.97989 5.11257 5.18211 5.22238 5.32502 5.40458 5.42631 5.49426 5.61811 5.64137 5.71727 5.75772 5.78368 5.87434 5.93491 5.97935 6.02620 6.07636 6.10056 6.20815 6.49537 6.77549 7.05992 7.36470 7.46782 7.93351 8.17162 8.46182 8.78782 9.05491 9.40541 9.88416 10.66349 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.035256 B = 0.002388 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.009132 B =11720.092289 C =12227.469353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 C -0.184 4.184 4 O -0.558 6.558 5 C -0.088 4.088 6 H 0.081 0.919 7 C -0.110 4.110 8 C -0.136 4.136 9 C 0.108 3.892 10 N -0.629 5.629 11 C 0.709 3.291 12 O -0.597 6.597 13 N -0.725 5.725 14 C 0.127 3.873 15 C 0.429 3.571 16 O -0.599 6.599 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 C 0.134 3.866 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.374 0.626 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.406 0.594 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.274 0.726 45 H 0.097 0.903 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 9.162 22.727 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.094 3.906 3 C -0.241 4.241 4 O -0.364 6.364 5 C -0.108 4.108 6 H 0.099 0.901 7 C -0.147 4.147 8 C -0.174 4.174 9 C -0.016 4.016 10 N -0.367 5.367 11 C 0.410 3.590 12 O -0.476 6.476 13 N -0.384 5.384 14 C -0.001 4.001 15 C 0.215 3.785 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.434 4.434 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C 0.011 3.989 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.221 0.779 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.246 0.754 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.230 0.770 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.739 8.719 22.183 23.992 hybrid contribution 0.040 -0.009 -0.437 0.439 sum 2.778 8.710 21.746 23.590 Atomic orbital electron populations 1.22572 0.95594 1.03167 1.02715 1.21076 0.92519 0.91114 0.85933 1.22634 1.02539 0.96327 1.02640 1.86554 1.77112 1.57208 1.15548 1.21457 0.96606 1.00622 0.92069 0.90050 1.21539 0.94294 1.00735 0.98173 1.21945 1.00975 1.00073 0.94447 1.21689 0.80090 1.00923 0.98881 1.47134 1.06166 1.64474 1.18943 1.15744 0.85018 0.78175 0.80056 1.90881 1.12042 1.63052 1.81596 1.44967 1.11513 1.68742 1.13186 1.20794 0.92874 1.00908 0.85557 1.19760 0.88751 0.85465 0.84533 1.90484 1.14828 1.61317 1.81911 1.41787 1.10055 1.54926 1.11629 1.19724 0.92701 1.39292 0.91678 0.87695 1.25326 0.96184 0.97284 0.98958 1.69615 1.09514 1.46836 1.27522 0.85813 0.79652 0.79057 0.79499 1.20273 1.20808 1.19331 1.21563 0.99830 0.95253 0.82287 0.90986 0.91575 0.92374 0.92428 0.91344 0.91120 0.77894 0.91724 0.90859 0.90520 0.91338 0.91307 0.89745 0.75356 0.89970 0.90076 0.77006 0.91596 0.88489 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.47 37.15 0.31 -1.07 16 2 C 0.13 1.05 0.86 -90.62 -0.08 0.97 16 3 C -0.18 -1.16 8.12 37.16 0.30 -0.86 16 4 O -0.56 -4.51 12.28 -35.23 -0.43 -4.95 16 5 C -0.09 -0.85 1.91 -90.50 -0.17 -1.03 16 6 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 7 C -0.11 -0.97 4.65 -26.69 -0.12 -1.10 16 8 C -0.14 -1.27 6.08 -26.61 -0.16 -1.44 16 9 C 0.11 1.16 6.38 -3.71 -0.02 1.14 16 10 N -0.63 -8.32 2.97 -178.49 -0.53 -8.85 16 11 C 0.71 12.10 8.29 -86.91 -0.72 11.38 16 12 O -0.60 -11.88 15.77 5.29 0.08 -11.80 16 13 N -0.72 -12.74 5.44 -66.42 -0.36 -13.10 16 14 C 0.13 2.42 6.16 -5.20 -0.03 2.39 16 15 C 0.43 9.95 7.85 -10.99 -0.09 9.86 16 16 O -0.60 -15.37 15.24 5.55 0.08 -15.29 16 17 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 19 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.99 13.05 55.50 0.72 -23.26 16 22 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 C 0.13 1.48 4.98 -3.71 -0.02 1.46 16 27 H 0.07 0.57 6.57 -51.93 -0.34 0.22 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.44 6.46 -51.93 -0.34 0.11 16 32 H 0.07 0.45 6.32 -51.93 -0.33 0.12 16 33 H 0.37 1.62 9.04 45.56 0.41 2.03 16 34 H 0.06 0.51 6.50 -51.93 -0.34 0.17 16 35 H 0.07 0.68 7.64 -51.93 -0.40 0.29 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.99 5.65 -51.93 -0.29 0.69 16 40 H 0.41 6.98 4.93 -40.82 -0.20 6.77 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.10 1.22 5.61 -51.93 -0.29 0.93 16 46 H 0.07 0.63 6.17 -51.93 -0.32 0.31 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -32.45 361.40 -7.18 -39.64 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -6.07 Total: 16.53 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: -1.04 Total: 13.84 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.23 Total: -58.98 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.26 Total: -32.03 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.45 -7.18 -39.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227976580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.241 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds