Wall clock time and date at job start Fri Apr 10 2020 18:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47486 * 2 1 4 4 O 1.42911 * 109.47259 * 120.00013 * 2 1 3 5 5 C 1.53007 * 109.47257 * 239.99653 * 2 1 3 6 6 H 1.08999 * 109.49434 * 300.06950 * 5 2 1 7 7 C 1.53034 * 109.49932 * 180.02562 * 5 2 1 8 8 C 1.53041 * 109.53897 * 178.68476 * 7 5 2 9 9 C 1.53192 * 109.31103 * 61.36503 * 8 7 5 10 10 N 1.46928 * 108.77502 * 305.36698 * 9 8 7 11 11 C 1.34778 * 120.63226 * 233.63150 * 10 9 8 12 12 O 1.21582 * 120.00384 * 174.77271 * 11 10 9 13 13 N 1.34785 * 119.99737 * 354.77198 * 11 10 9 14 14 C 1.46500 * 119.99945 * 184.98367 * 13 11 10 15 15 C 1.50697 * 109.47121 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99812 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99975 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99798 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00299 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99782 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99920 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99664 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47352 * 90.00697 * 22 20 18 24 24 H 1.48503 * 109.46910 * 210.00379 * 22 20 18 25 25 H 1.48500 * 109.47304 * 330.00065 * 22 20 18 26 26 C 1.46927 * 118.74034 * 53.60829 * 10 9 8 27 27 H 1.08992 * 109.47157 * 59.99900 * 1 2 3 28 28 H 1.09002 * 109.47606 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46888 * 300.00156 * 1 2 3 30 30 H 1.08997 * 109.46899 * 59.99920 * 3 2 1 31 31 H 1.08996 * 109.47161 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46850 * 299.99912 * 3 2 1 33 33 H 0.96694 * 113.99548 * 299.99879 * 4 2 1 34 34 H 1.09002 * 109.46169 * 298.70305 * 7 5 2 35 35 H 1.09001 * 109.46339 * 58.67631 * 7 5 2 36 36 H 1.09000 * 109.49755 * 181.31575 * 8 7 5 37 37 H 1.08998 * 109.49784 * 301.41460 * 8 7 5 38 38 H 1.09003 * 109.59126 * 65.15286 * 9 8 7 39 39 H 1.08997 * 109.58701 * 185.43923 * 9 8 7 40 40 H 0.97000 * 119.99838 * 4.98609 * 13 11 10 41 41 H 1.09001 * 109.47077 * 299.99924 * 14 13 11 42 42 H 1.08996 * 109.47206 * 60.00169 * 14 13 11 43 43 H 0.97001 * 120.00168 * 359.97438 * 17 15 14 44 44 H 0.97002 * 119.99797 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58669 * 186.60344 * 26 10 9 46 46 H 1.09001 * 109.58756 * 66.18064 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.0400 -0.7214 -1.2492 6 1 1.6759 -1.7487 -1.2502 7 6 3.5703 -0.7223 -1.2495 8 6 4.0815 -1.4721 -2.4819 9 6 3.5982 -0.7562 -3.7471 10 7 2.1363 -0.6223 -3.6854 11 6 1.3629 -1.0651 -4.6965 12 8 0.1518 -1.0357 -4.5934 13 7 1.9321 -1.5405 -5.8220 14 6 1.0946 -1.9197 -6.9626 15 6 1.9691 -2.4167 -8.0847 16 8 3.1736 -2.4504 -7.9455 17 7 1.4129 -2.8238 -9.2429 18 6 2.2086 -3.2755 -10.2639 19 1 3.2811 -3.3054 -10.1400 20 6 1.6352 -3.6956 -11.4578 21 7 0.3303 -3.6596 -11.6083 22 14 2.7193 -4.3117 -12.8487 23 1 2.9124 -5.7778 -12.7136 24 1 2.0696 -4.0159 -14.1509 25 1 4.0377 -3.6310 -12.7874 26 6 1.5335 0.0031 -2.5004 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.7210 -0.2701 1.9979 34 1 3.9341 0.3050 -1.2728 35 1 3.9334 -1.2157 -0.3480 36 1 5.1712 -1.4925 -2.4692 37 1 3.6978 -2.4923 -2.4721 38 1 4.0535 0.2325 -3.8041 39 1 3.8771 -1.3382 -4.6254 40 1 2.8963 -1.6317 -5.8766 41 1 0.4066 -2.7098 -6.6614 42 1 0.5269 -1.0529 -7.3006 43 1 0.4497 -2.7972 -9.3541 44 1 -0.0700 -3.9526 -12.4419 45 1 0.4480 -0.0793 -2.5561 46 1 1.8205 1.0537 -2.4557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227976580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:49 Heat of formation + Delta-G solvation = -146.866571 kcal Electronic energy + Delta-G solvation = -26744.327488 eV Core-core repulsion = 22860.645944 eV Total energy + Delta-G solvation = -3883.681544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73566 -40.41103 -39.72038 -37.67686 -36.27891 -35.43443 -34.19076 -33.37185 -33.23611 -30.50697 -29.22642 -28.32018 -26.76679 -25.67776 -24.89286 -22.46458 -21.44303 -21.09636 -20.23625 -19.99169 -19.31904 -17.66517 -17.50077 -17.16544 -16.95787 -16.62612 -16.30726 -15.89809 -15.82922 -15.51452 -15.38706 -15.14325 -14.90977 -14.52045 -14.38936 -14.21799 -13.87662 -13.71402 -13.54122 -13.52461 -12.91012 -12.83134 -12.72483 -12.59750 -12.57065 -12.45746 -12.12537 -11.99018 -11.76496 -11.67338 -11.57305 -11.33754 -11.09208 -10.76428 -10.56441 -10.32486 -10.09952 -9.53495 -8.51113 -6.01388 1.36415 1.41946 1.49149 1.57125 1.88571 2.04159 2.27831 2.80058 3.13907 3.16083 3.25836 3.62644 3.76166 3.94312 4.02751 4.12575 4.15526 4.20592 4.23524 4.33207 4.40900 4.44416 4.53565 4.64668 4.71081 4.73714 4.81491 4.86520 4.96790 4.99005 5.08151 5.16191 5.22194 5.28665 5.32235 5.36078 5.38663 5.49920 5.52188 5.85556 5.91922 6.47507 6.86073 6.95311 7.03062 7.40019 7.47792 7.93657 8.65884 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.035256 B = 0.002388 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.009132 B =11720.092289 C =12227.469353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.139 3.861 3 C -0.180 4.180 4 O -0.573 6.573 5 C -0.085 4.085 6 H 0.052 0.948 7 C -0.103 4.103 8 C -0.132 4.132 9 C 0.103 3.897 10 N -0.624 5.624 11 C 0.705 3.295 12 O -0.629 6.629 13 N -0.726 5.726 14 C 0.140 3.860 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.336 4.336 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.269 1.269 26 C 0.133 3.867 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.391 0.609 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.409 0.591 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.079 0.921 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 10.274 23.666 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.237 4.237 4 O -0.382 6.382 5 C -0.105 4.105 6 H 0.070 0.930 7 C -0.141 4.141 8 C -0.170 4.170 9 C -0.019 4.019 10 N -0.360 5.360 11 C 0.406 3.594 12 O -0.511 6.511 13 N -0.386 5.386 14 C 0.012 3.988 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.194 1.194 26 C 0.010 3.990 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.241 0.759 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.249 0.751 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.703 9.848 23.175 25.451 hybrid contribution -0.258 -0.343 -0.621 0.755 sum 3.445 9.505 22.554 24.716 Atomic orbital electron populations 1.22564 0.95707 1.02228 1.03476 1.20980 0.92358 0.91788 0.85104 1.22591 1.02633 0.94921 1.03556 1.86509 1.77306 1.57936 1.16440 1.21378 0.97387 0.99068 0.92620 0.92966 1.21503 0.93323 1.01628 0.97625 1.21927 1.02204 0.98887 0.93966 1.21901 0.78519 1.02300 0.99209 1.47253 1.07098 1.63297 1.18374 1.15881 0.84875 0.78155 0.80491 1.90854 1.13540 1.64446 1.82290 1.44907 1.11411 1.69146 1.13102 1.20599 0.92191 1.01407 0.84643 1.20366 0.88791 0.83961 0.84750 1.90459 1.16258 1.61978 1.82484 1.41833 1.10046 1.55562 1.11967 1.19740 0.92294 1.41360 0.93180 0.89515 1.26147 0.97528 0.96792 1.00729 1.69683 1.10666 1.46926 1.28365 0.84857 0.77839 0.78567 0.76656 1.19586 1.19639 1.19365 1.21722 0.98839 0.96500 0.81895 0.91486 0.93383 0.90345 0.90761 0.91097 0.91019 0.75929 0.89896 0.91041 0.88355 0.93179 0.88905 0.90843 0.75075 0.89301 0.88913 0.76698 0.91058 0.90300 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.47 71.98 0.61 -1.99 16 2 C 0.14 1.95 0.86 -10.79 -0.01 1.94 16 3 C -0.18 -1.76 8.12 71.98 0.58 -1.17 16 4 O -0.57 -8.29 12.28 -148.98 -1.83 -10.12 16 5 C -0.08 -1.58 1.91 -10.72 -0.02 -1.60 16 6 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 7 C -0.10 -1.63 4.65 30.62 0.14 -1.49 16 8 C -0.13 -2.28 6.08 30.67 0.19 -2.09 16 9 C 0.10 2.09 6.38 86.36 0.55 2.64 16 10 N -0.62 -16.10 2.97 -836.90 -2.49 -18.59 16 11 C 0.70 24.09 8.29 179.05 1.49 25.58 16 12 O -0.63 -25.36 15.77 -3.97 -0.06 -25.42 16 13 N -0.73 -25.56 5.44 -482.30 -2.62 -28.18 16 14 C 0.14 5.36 6.16 85.63 0.53 5.89 16 15 C 0.43 20.39 7.85 87.66 0.69 21.07 16 16 O -0.62 -32.46 15.24 -3.07 -0.05 -32.51 16 17 N -0.56 -28.37 5.29 -306.98 -1.62 -29.99 16 18 C -0.34 -18.62 9.68 84.04 0.81 -17.80 16 19 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 20 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 21 N -0.92 -48.97 13.05 21.66 0.28 -48.68 16 22 Si 1.00 41.84 29.55 68.60 2.03 43.87 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 C 0.13 2.82 4.98 86.36 0.43 3.25 16 27 H 0.07 1.02 6.57 -2.39 -0.02 1.00 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.68 6.46 -2.39 -0.02 0.67 16 32 H 0.07 0.70 6.32 -2.39 -0.02 0.68 16 33 H 0.39 2.52 9.04 -74.06 -0.67 1.85 16 34 H 0.08 1.04 6.50 -2.39 -0.02 1.02 16 35 H 0.07 1.20 7.64 -2.39 -0.02 1.18 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.67 5.65 -2.39 -0.01 1.66 16 40 H 0.41 14.06 4.93 -92.71 -0.46 13.61 16 41 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 44 H 0.28 13.98 8.31 -92.71 -0.77 13.20 16 45 H 0.08 2.00 5.61 -2.39 -0.01 1.98 16 46 H 0.09 1.51 6.17 -2.39 -0.01 1.50 16 Total: -1.00 -69.88 361.40 -0.73 -70.61 By element: Atomic # 1 Polarization: 45.74 SS G_CDS: -0.83 Total: 44.92 kcal Atomic # 6 Polarization: 27.63 SS G_CDS: 6.46 Total: 34.09 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -6.45 Total: -125.44 kcal Atomic # 8 Polarization: -66.11 SS G_CDS: -1.94 Total: -68.05 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -69.88 -0.73 -70.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227976580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.253 kcal (2) G-P(sol) polarization free energy of solvation -69.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds