Wall clock time and date at job start Fri Apr 10 2020 18:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00181 * 2 1 4 4 H 1.09002 * 109.46810 * 330.00959 * 3 2 1 5 5 C 1.53005 * 109.46729 * 90.00196 * 3 2 1 6 6 C 1.50693 * 109.47345 * 210.00452 * 3 2 1 7 7 O 1.21281 * 120.00417 * 345.87317 * 6 3 2 8 8 N 1.34783 * 119.99826 * 165.87388 * 6 3 2 9 9 C 1.46493 * 120.00039 * 4.49919 * 8 6 3 10 10 C 1.46500 * 119.99516 * 184.49921 * 8 6 3 11 11 C 1.53002 * 109.46951 * 269.99538 * 10 8 6 12 12 H 1.08999 * 112.96187 * 285.33666 * 11 10 8 13 13 C 1.53944 * 113.75627 * 153.68882 * 11 10 8 14 14 C 1.53930 * 86.34137 * 221.85155 * 13 11 10 15 15 N 1.47960 * 113.85893 * 57.08283 * 11 10 8 16 16 C 1.46891 * 110.99967 * 251.91172 * 15 11 10 17 17 C 1.50706 * 109.47403 * 170.00041 * 16 15 11 18 18 O 1.21296 * 119.99283 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00479 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00137 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00241 * 0.02562 * 20 19 17 22 22 C 1.38957 * 119.99644 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00521 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99712 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47153 * 90.00079 * 24 22 20 26 26 H 1.48495 * 109.47239 * 210.00225 * 24 22 20 27 27 H 1.48499 * 109.46946 * 330.00296 * 24 22 20 28 28 H 1.09001 * 109.47191 * 299.99578 * 1 2 3 29 29 H 1.08996 * 109.47893 * 59.99474 * 1 2 3 30 30 H 1.09001 * 109.47443 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47041 * 52.18681 * 5 3 2 32 32 H 1.08997 * 109.46502 * 172.18441 * 5 3 2 33 33 H 1.08999 * 109.47251 * 292.18334 * 5 3 2 34 34 H 1.09000 * 109.47141 * 268.09488 * 9 8 6 35 35 H 1.08996 * 109.47192 * 28.09705 * 9 8 6 36 36 H 1.09007 * 109.47266 * 148.09786 * 9 8 6 37 37 H 1.08998 * 109.46579 * 150.00086 * 10 8 6 38 38 H 1.08994 * 109.47804 * 29.99890 * 10 8 6 39 39 H 1.08997 * 113.73166 * 336.21821 * 13 11 10 40 40 H 1.09007 * 113.72969 * 107.49550 * 13 11 10 41 41 H 1.09006 * 113.75682 * 138.03351 * 14 13 11 42 42 H 1.08999 * 113.76303 * 269.29619 * 14 13 11 43 43 H 1.08999 * 109.47113 * 289.99687 * 16 15 11 44 44 H 1.08999 * 109.47645 * 49.99742 * 16 15 11 45 45 H 0.97009 * 119.99618 * 0.02562 * 19 17 16 46 46 H 0.96997 * 120.00626 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 -0.5137 5 6 2.2177 1.7713 1.4426 6 6 3.3385 1.2639 -0.7105 7 8 3.8682 0.1982 -0.9442 8 7 3.9379 2.4112 -1.0862 9 6 3.3481 3.7005 -0.7177 10 6 5.1793 2.3686 -1.8630 11 6 6.3766 2.3546 -0.9106 12 1 6.5679 3.3254 -0.4535 13 6 7.6325 1.6898 -1.5029 14 6 7.8149 1.0323 -0.1231 15 7 6.3599 1.2339 0.0553 16 6 6.0569 1.7118 1.4109 17 6 5.8063 0.5324 2.3151 18 8 5.8730 -0.5953 1.8733 19 7 5.5080 0.7307 3.6143 20 6 5.2795 -0.3422 4.4366 21 1 5.3389 -1.3462 4.0435 22 6 4.9725 -0.1376 5.7764 23 7 4.9007 1.0840 6.2550 24 14 4.6619 -1.5995 6.8970 25 1 5.9420 -2.0318 7.5131 26 1 3.7054 -1.2107 7.9643 27 1 4.0913 -2.7183 6.1046 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 2.7670 1.0090 1.9951 32 1 2.7850 2.7019 1.4457 33 1 1.2488 1.9348 1.9145 34 1 2.6825 4.0361 -1.5130 35 1 2.7824 3.5902 0.2073 36 1 4.1408 4.4348 -0.5735 37 1 5.2362 3.2475 -2.5052 38 1 5.1930 1.4683 -2.4772 39 1 7.4177 0.9804 -2.3021 40 1 8.4223 2.3955 -1.7605 41 1 8.1103 -0.0158 -0.1717 42 1 8.4282 1.6156 0.5637 43 1 6.9011 2.2874 1.7903 44 1 5.1692 2.3437 1.3835 45 1 5.4543 1.6326 3.9674 46 1 4.6861 1.2268 7.1901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230939533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:02 Heat of formation + Delta-G solvation = -55.571752 kcal Electronic energy + Delta-G solvation = -28517.906308 eV Core-core repulsion = 24638.183605 eV Total energy + Delta-G solvation = -3879.722704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36422 -39.24815 -37.63574 -37.22155 -35.20855 -33.74877 -31.86147 -31.13745 -30.31571 -28.65332 -26.85263 -26.43393 -25.60189 -24.15631 -23.54237 -22.56365 -19.52411 -19.20429 -19.04291 -17.76135 -17.18557 -16.63123 -15.96517 -15.78221 -15.59139 -15.30785 -15.04081 -14.56343 -14.42474 -14.26239 -13.82880 -13.64911 -13.37228 -13.24673 -12.91089 -12.81069 -12.52362 -12.25283 -12.15790 -11.73416 -11.61776 -11.56723 -11.46332 -11.34977 -11.12896 -10.97811 -10.86684 -10.67546 -10.45337 -10.30330 -10.09091 -9.76819 -9.36637 -9.06345 -8.69341 -8.26004 -7.92838 -7.81616 -6.30152 -3.69417 2.90339 3.05418 3.25192 3.32539 3.40344 3.94637 4.07145 4.14040 4.33399 4.65878 4.66201 4.87960 4.93004 5.01671 5.14985 5.15659 5.17052 5.31746 5.32661 5.33302 5.38433 5.42264 5.46162 5.54028 5.64374 5.70366 5.78162 5.79254 5.84151 5.84508 5.88695 5.99237 6.11570 6.38291 6.43405 6.51852 6.61112 6.85848 7.16997 7.41544 7.60643 7.66801 8.20043 8.62268 8.77116 9.32705 9.69009 10.24177 10.88258 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.005422 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.577174 B = 5162.909395 C = 6683.929418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.075 3.925 4 H 0.074 0.926 5 C -0.177 4.177 6 C 0.511 3.489 7 O -0.468 6.468 8 N -0.621 5.621 9 C 0.065 3.935 10 C 0.143 3.857 11 C 0.003 3.997 12 H 0.072 0.928 13 C -0.134 4.134 14 C 0.007 3.993 15 N -0.419 5.419 16 C 0.013 3.987 17 C 0.451 3.549 18 O -0.559 6.559 19 N -0.574 5.574 20 C -0.289 4.289 21 H 0.101 0.899 22 C 0.020 3.980 23 N -0.908 5.908 24 Si 0.925 3.075 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.270 1.270 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.388 0.612 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 11.451 -14.693 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.014 3.986 4 H 0.091 0.909 5 C -0.234 4.234 6 C 0.296 3.704 7 O -0.336 6.336 8 N -0.359 5.359 9 C -0.078 4.078 10 C 0.020 3.980 11 C -0.108 4.108 12 H 0.090 0.910 13 C -0.172 4.172 14 C -0.122 4.122 15 N -0.141 5.141 16 C -0.119 4.119 17 C 0.236 3.764 18 O -0.440 6.440 19 N -0.212 5.212 20 C -0.419 4.419 21 H 0.119 0.881 22 C -0.180 4.180 23 N -0.551 5.551 24 Si 0.753 3.247 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.194 1.194 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.221 0.779 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.167 9.366 -15.009 18.176 hybrid contribution 0.033 1.143 1.411 1.816 sum -4.135 10.509 -13.598 17.676 Atomic orbital electron populations 1.22838 0.81253 1.03048 0.99554 1.88132 1.19048 1.25165 1.94866 1.21918 0.93471 0.86336 0.96895 0.90855 1.22394 1.03185 1.02804 0.95061 1.20215 0.86319 0.84069 0.79804 1.90812 1.63413 1.28556 1.50857 1.47615 1.25578 1.05669 1.57031 1.22048 0.99189 0.85524 1.01076 1.21311 0.81601 1.02664 0.92421 1.23962 0.95695 0.94984 0.96193 0.90965 1.23323 0.96247 0.99522 0.98151 1.23848 0.90659 1.02345 0.95342 1.68505 1.15487 1.26959 1.03162 1.22463 1.00741 0.97030 0.91668 1.19692 0.84045 0.89947 0.82764 1.90568 1.54824 1.23972 1.74679 1.41851 1.62753 1.09401 1.07239 1.19674 1.43415 0.88922 0.89893 0.88145 1.25175 0.97896 0.97537 0.97440 1.69606 1.50151 1.19801 1.15501 0.85921 0.78112 0.81215 0.79461 1.20581 1.21061 1.19444 0.93909 0.94377 0.89321 0.89534 0.90934 0.91595 0.92941 0.90230 0.91244 0.90608 0.89434 0.89049 0.91381 0.89208 0.91927 0.93246 0.90435 0.77917 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.46 16 2 O -0.35 -6.28 9.92 -54.73 -0.54 -6.83 16 3 C 0.08 1.15 2.32 -27.88 -0.06 1.08 16 4 H 0.07 0.83 7.34 -51.93 -0.38 0.45 16 5 C -0.18 -2.71 9.12 37.16 0.34 -2.37 16 6 C 0.51 8.83 6.60 -10.99 -0.07 8.76 16 7 O -0.47 -10.59 15.37 -13.94 -0.21 -10.80 16 8 N -0.62 -8.06 2.83 -181.58 -0.51 -8.57 16 9 C 0.06 0.57 9.86 59.84 0.59 1.16 16 10 C 0.14 1.72 5.57 -4.04 -0.02 1.70 16 11 C 0.00 0.04 3.56 -66.65 -0.24 -0.20 16 12 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 13 C -0.13 -1.61 7.84 -25.80 -0.20 -1.81 16 14 C 0.01 0.11 7.95 -2.77 -0.02 0.09 16 15 N -0.42 -7.60 4.17 -232.12 -0.97 -8.57 16 16 C 0.01 0.26 5.28 -4.98 -0.03 0.23 16 17 C 0.45 11.44 7.83 -10.99 -0.09 11.35 16 18 O -0.56 -16.71 16.01 5.54 0.09 -16.62 16 19 N -0.57 -15.16 5.29 -10.96 -0.06 -15.22 16 20 C -0.29 -8.41 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 3.12 7.16 -52.49 -0.38 2.74 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 23 N -0.91 -25.23 13.05 55.50 0.72 -24.50 16 24 Si 0.93 21.93 29.55 -169.99 -5.02 16.91 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 28 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 29 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.07 0.95 5.52 -51.93 -0.29 0.67 16 33 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.70 4.20 -51.93 -0.22 0.48 16 36 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.08 0.63 8.07 -51.93 -0.42 0.22 16 38 H 0.09 1.23 7.22 -51.93 -0.38 0.86 16 39 H 0.09 1.11 7.92 -51.93 -0.41 0.70 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 42 H 0.06 0.92 7.48 -51.93 -0.39 0.54 16 43 H 0.05 0.87 7.38 -51.93 -0.38 0.48 16 44 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 45 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -37.98 376.96 -7.10 -45.08 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -7.32 Total: 10.10 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 1.05 Total: 13.34 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.82 Total: -56.86 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.67 Total: -34.25 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.98 -7.10 -45.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230939533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.495 kcal (2) G-P(sol) polarization free energy of solvation -37.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds