Wall clock time and date at job start Fri Apr 10 2020 18:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47180 * 2 1 4 4 C 1.46499 * 119.99411 * 265.52953 * 3 2 1 5 5 C 1.52998 * 109.47519 * 262.28113 * 4 3 2 6 6 O 1.42903 * 109.46814 * 64.99970 * 5 4 3 7 7 C 1.34775 * 120.00375 * 85.52677 * 3 2 1 8 8 O 1.21351 * 120.00000 * 1.72650 * 7 3 2 9 9 C 1.49449 * 119.99823 * 181.72093 * 7 3 2 10 10 O 1.21348 * 120.00485 * 355.93800 * 9 7 3 11 11 N 1.34776 * 119.99568 * 175.94279 * 9 7 3 12 12 C 1.46502 * 119.99619 * 180.02562 * 11 9 7 13 13 C 1.53075 * 109.44591 * 84.79318 * 12 11 9 14 14 C 1.53195 * 109.29571 * 181.23298 * 13 12 11 15 15 N 1.46924 * 108.89327 * 305.57860 * 14 13 12 16 16 C 1.36939 * 120.62698 * 233.51608 * 15 14 13 17 17 H 1.08004 * 119.99740 * 147.89747 * 16 15 14 18 18 C 1.38816 * 120.00118 * 327.89379 * 16 15 14 19 19 N 1.31617 * 119.99706 * 338.92666 * 18 16 15 20 20 Si 1.86802 * 119.99676 * 158.92337 * 18 16 15 21 21 H 1.48492 * 109.47293 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46580 * 120.00302 * 20 18 16 23 23 H 1.48494 * 109.47070 * 239.99748 * 20 18 16 24 24 C 1.46923 * 118.74212 * 53.53740 * 15 14 13 25 25 C 1.53047 * 109.45887 * 204.99640 * 12 11 9 26 26 H 1.08998 * 109.47371 * 60.00352 * 1 2 3 27 27 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47138 * 300.00189 * 1 2 3 29 29 H 1.08991 * 109.47139 * 239.99547 * 2 1 3 30 30 H 1.09006 * 109.46969 * 119.99173 * 2 1 3 31 31 H 1.08994 * 109.47525 * 22.28847 * 4 3 2 32 32 H 1.09014 * 109.47049 * 142.28296 * 4 3 2 33 33 H 1.09001 * 109.47592 * 185.00285 * 5 4 3 34 34 H 1.09004 * 109.47051 * 305.00541 * 5 4 3 35 35 H 0.96696 * 114.00073 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00605 * 359.97438 * 11 9 7 37 37 H 1.08996 * 109.46312 * 324.96644 * 12 11 9 38 38 H 1.09008 * 109.38879 * 61.35842 * 13 12 11 39 39 H 1.08999 * 109.61945 * 301.25195 * 13 12 11 40 40 H 1.09001 * 109.58139 * 185.71899 * 14 13 12 41 41 H 1.09002 * 109.58255 * 65.44059 * 14 13 12 42 42 H 0.97005 * 119.99691 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.58138 * 66.17328 * 24 15 14 44 44 H 1.08994 * 109.59090 * 186.46138 * 24 15 14 45 45 H 1.09004 * 109.49335 * 58.67886 * 25 12 11 46 46 H 1.08995 * 109.52615 * 298.59680 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3557 2.0387 -1.2649 5 6 3.8655 1.9534 -1.4974 6 8 4.2444 0.5862 -1.6692 7 6 2.1571 2.0470 1.1636 8 8 1.9075 1.4922 2.2136 9 6 2.6186 3.4684 1.1607 10 8 2.9388 4.0004 0.1181 11 7 2.6792 4.1595 2.3162 12 6 3.1310 5.5531 2.3133 13 6 1.9494 6.4713 1.9910 14 6 2.4319 7.9249 1.9585 15 7 3.1084 8.2301 3.2266 16 6 2.7280 9.3099 3.9779 17 1 2.8049 9.2726 5.0546 18 6 2.2435 10.4523 3.3558 19 7 2.5217 10.6804 2.0898 20 14 1.1968 11.6659 4.3156 21 1 1.0312 11.1823 5.7098 22 1 1.8635 12.9928 4.3282 23 1 -0.1358 11.7876 3.6718 24 6 4.2010 7.3550 3.6729 25 6 3.6982 5.9081 3.6898 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.8335 1.5426 -2.0829 32 1 2.0532 3.0852 -1.2225 33 1 4.1280 2.5183 -2.3919 34 1 4.3897 2.3704 -0.6374 35 1 5.1904 0.4565 -1.8216 36 1 2.4230 3.7345 3.1496 37 1 3.9054 5.6823 1.5572 38 1 1.1839 6.3591 2.7590 39 1 1.5328 6.2044 1.0197 40 1 1.5783 8.5904 1.8303 41 1 3.1284 8.0602 1.1310 42 1 2.1829 11.4786 1.6550 43 1 5.0424 7.4415 2.9853 44 1 4.5163 7.6462 4.6748 45 1 4.5252 5.2384 3.9261 46 1 2.9180 5.8028 4.4435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323265970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:25 Heat of formation + Delta-G solvation = -91.360942 kcal Electronic energy + Delta-G solvation = -27295.048575 eV Core-core repulsion = 23413.773936 eV Total energy + Delta-G solvation = -3881.274639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93960 -38.90313 -37.55511 -37.22435 -35.78497 -34.45020 -32.17003 -31.71172 -30.16603 -29.64716 -28.87476 -25.93375 -24.61700 -23.32867 -22.64641 -22.32508 -21.20205 -20.01707 -19.13834 -17.83027 -17.65151 -17.02131 -16.74324 -16.25838 -15.70169 -15.41882 -14.77943 -14.56966 -14.33148 -14.16367 -13.90852 -13.79647 -13.61186 -13.49959 -13.06563 -12.84811 -12.74132 -12.50092 -12.43722 -12.21010 -11.69366 -11.52783 -11.40052 -11.24176 -11.11951 -10.95267 -10.77169 -10.46090 -10.28281 -10.22668 -10.12922 -9.85038 -9.71819 -9.29907 -8.99232 -8.82394 -8.47821 -6.69020 -5.84150 -3.28147 1.44033 2.31885 3.21291 3.35061 3.43925 3.44297 3.46369 4.07954 4.36010 4.47132 4.82859 4.93661 4.94581 5.11322 5.14859 5.20147 5.28453 5.33478 5.38146 5.52246 5.53423 5.58285 5.65024 5.72055 5.74294 5.95803 5.99444 6.17338 6.21588 6.24059 6.33660 6.49283 6.58304 6.69706 6.72092 6.88662 6.92696 7.23190 7.33643 7.38930 7.51905 7.73905 7.79700 8.06545 8.42510 9.16084 9.79284 10.38811 11.24165 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.002902 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.527827 B = 9645.786333 C = 9816.598558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.577 5.577 4 C 0.102 3.898 5 C 0.065 3.935 6 O -0.578 6.578 7 C 0.504 3.496 8 O -0.524 6.524 9 C 0.503 3.497 10 O -0.520 6.520 11 N -0.689 5.689 12 C 0.149 3.851 13 C -0.147 4.147 14 C 0.178 3.822 15 N -0.590 5.590 16 C -0.262 4.262 17 H 0.064 0.936 18 C 0.010 3.990 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.149 3.851 25 C -0.140 4.140 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.377 0.623 36 H 0.407 0.593 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.024 0.976 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -20.281 -6.624 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.311 5.311 4 C -0.020 4.020 5 C -0.013 4.013 6 O -0.383 6.383 7 C 0.286 3.714 8 O -0.400 6.400 9 C 0.283 3.717 10 O -0.398 6.398 11 N -0.340 5.340 12 C 0.046 3.954 13 C -0.187 4.187 14 C 0.051 3.949 15 N -0.313 5.313 16 C -0.391 4.391 17 H 0.082 0.918 18 C -0.190 4.190 19 N -0.536 5.536 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.022 3.978 25 C -0.180 4.180 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.224 0.776 36 H 0.243 0.757 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.058 -20.116 -6.810 21.237 hybrid contribution -0.088 0.578 0.588 0.830 sum -0.147 -19.537 -6.221 20.505 Atomic orbital electron populations 1.22155 0.95730 1.02351 1.02499 1.21531 0.94133 0.81394 1.03767 1.47788 1.62988 1.14035 1.06252 1.22216 0.94173 1.01015 0.84641 1.22621 0.95957 0.82249 1.00469 1.86438 1.29667 1.26719 1.95517 1.20384 0.79104 0.87681 0.84197 1.90736 1.49483 1.69066 1.30723 1.20039 0.79804 0.86860 0.84973 1.90663 1.48031 1.70741 1.30369 1.46230 1.64417 1.14090 1.09267 1.21225 0.97545 0.77481 0.99111 1.22584 0.96984 0.98753 1.00397 1.20637 0.96906 0.89687 0.87638 1.44059 1.35133 1.28832 1.23282 1.19128 1.39145 0.91180 0.89680 0.91792 1.25121 1.01099 0.96503 0.96325 1.70101 1.44976 1.27037 1.11493 0.86317 0.80398 0.80916 0.79681 1.20125 1.21682 1.21478 1.20846 0.90689 0.87658 0.98589 1.22365 1.00345 1.00060 0.95248 0.92454 0.91395 0.92140 0.89427 0.90091 0.90143 0.85637 0.92395 0.92888 0.77625 0.75729 0.89546 0.92351 0.92677 0.90455 0.95827 0.93617 0.96148 0.92123 0.92377 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.21 37.16 0.38 -1.09 16 2 C 0.11 1.12 6.06 -4.04 -0.02 1.09 16 3 N -0.58 -6.69 2.45 -174.20 -0.43 -7.11 16 4 C 0.10 1.05 5.36 -4.04 -0.02 1.03 16 5 C 0.07 0.65 6.73 37.16 0.25 0.90 16 6 O -0.58 -5.31 13.56 -35.23 -0.48 -5.79 16 7 C 0.50 6.96 7.62 -11.59 -0.09 6.88 16 8 O -0.52 -8.14 16.12 5.50 0.09 -8.05 16 9 C 0.50 7.32 7.51 -11.59 -0.09 7.24 16 10 O -0.52 -8.05 11.41 5.50 0.06 -7.99 16 11 N -0.69 -9.98 5.07 -54.18 -0.27 -10.25 16 12 C 0.15 2.47 2.41 -67.87 -0.16 2.31 16 13 C -0.15 -2.78 5.66 -26.59 -0.15 -2.93 16 14 C 0.18 4.14 5.31 -3.71 -0.02 4.12 16 15 N -0.59 -14.38 2.97 -172.32 -0.51 -14.89 16 16 C -0.26 -7.05 9.50 -15.06 -0.14 -7.19 16 17 H 0.06 1.70 7.91 -52.48 -0.42 1.28 16 18 C 0.01 0.26 4.77 -17.43 -0.08 0.18 16 19 N -0.89 -25.71 11.79 55.49 0.65 -25.06 16 20 Si 0.90 21.35 29.60 -169.99 -5.03 16.32 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.15 3.00 6.52 -3.71 -0.02 2.97 16 25 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.76 7.99 -51.93 -0.42 0.34 16 30 H 0.08 0.87 7.54 -51.93 -0.39 0.48 16 31 H 0.08 0.69 8.01 -51.93 -0.42 0.28 16 32 H 0.13 1.46 5.57 -51.92 -0.29 1.17 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.62 6.87 -51.93 -0.36 0.26 16 35 H 0.38 1.99 9.12 45.56 0.42 2.41 16 36 H 0.41 5.43 8.08 -40.82 -0.33 5.10 16 37 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 38 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 2.01 6.51 -51.93 -0.34 1.67 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -31.37 370.36 -7.36 -38.73 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.70 Total: 5.43 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -0.32 Total: 13.08 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.56 Total: -57.31 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.33 Total: -21.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.37 -7.36 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323265970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.627 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds