Wall clock time and date at job start Fri Apr 10 2020 18:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47180 * 2 1 4 4 C 1.46499 * 119.99411 * 265.52953 * 3 2 1 5 5 C 1.52998 * 109.47519 * 262.28113 * 4 3 2 6 6 O 1.42903 * 109.46814 * 64.99970 * 5 4 3 7 7 C 1.34775 * 120.00375 * 85.52677 * 3 2 1 8 8 O 1.21351 * 120.00000 * 1.72650 * 7 3 2 9 9 C 1.49449 * 119.99823 * 181.72093 * 7 3 2 10 10 O 1.21348 * 120.00485 * 355.93800 * 9 7 3 11 11 N 1.34776 * 119.99568 * 175.94279 * 9 7 3 12 12 C 1.46502 * 119.99619 * 180.02562 * 11 9 7 13 13 C 1.53075 * 109.44591 * 84.79318 * 12 11 9 14 14 C 1.53195 * 109.29571 * 181.23298 * 13 12 11 15 15 N 1.46924 * 108.89327 * 305.57860 * 14 13 12 16 16 C 1.36939 * 120.62698 * 233.51608 * 15 14 13 17 17 H 1.08004 * 119.99740 * 147.89747 * 16 15 14 18 18 C 1.38816 * 120.00118 * 327.89379 * 16 15 14 19 19 N 1.31617 * 119.99706 * 338.92666 * 18 16 15 20 20 Si 1.86802 * 119.99676 * 158.92337 * 18 16 15 21 21 H 1.48492 * 109.47293 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46580 * 120.00302 * 20 18 16 23 23 H 1.48494 * 109.47070 * 239.99748 * 20 18 16 24 24 C 1.46923 * 118.74212 * 53.53740 * 15 14 13 25 25 C 1.53047 * 109.45887 * 204.99640 * 12 11 9 26 26 H 1.08998 * 109.47371 * 60.00352 * 1 2 3 27 27 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47138 * 300.00189 * 1 2 3 29 29 H 1.08991 * 109.47139 * 239.99547 * 2 1 3 30 30 H 1.09006 * 109.46969 * 119.99173 * 2 1 3 31 31 H 1.08994 * 109.47525 * 22.28847 * 4 3 2 32 32 H 1.09014 * 109.47049 * 142.28296 * 4 3 2 33 33 H 1.09001 * 109.47592 * 185.00285 * 5 4 3 34 34 H 1.09004 * 109.47051 * 305.00541 * 5 4 3 35 35 H 0.96696 * 114.00073 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00605 * 359.97438 * 11 9 7 37 37 H 1.08996 * 109.46312 * 324.96644 * 12 11 9 38 38 H 1.09008 * 109.38879 * 61.35842 * 13 12 11 39 39 H 1.08999 * 109.61945 * 301.25195 * 13 12 11 40 40 H 1.09001 * 109.58139 * 185.71899 * 14 13 12 41 41 H 1.09002 * 109.58255 * 65.44059 * 14 13 12 42 42 H 0.97005 * 119.99691 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.58138 * 66.17328 * 24 15 14 44 44 H 1.08994 * 109.59090 * 186.46138 * 24 15 14 45 45 H 1.09004 * 109.49335 * 58.67886 * 25 12 11 46 46 H 1.08995 * 109.52615 * 298.59680 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3557 2.0387 -1.2649 5 6 3.8655 1.9534 -1.4974 6 8 4.2444 0.5862 -1.6692 7 6 2.1571 2.0470 1.1636 8 8 1.9075 1.4922 2.2136 9 6 2.6186 3.4684 1.1607 10 8 2.9388 4.0004 0.1181 11 7 2.6792 4.1595 2.3162 12 6 3.1310 5.5531 2.3133 13 6 1.9494 6.4713 1.9910 14 6 2.4319 7.9249 1.9585 15 7 3.1084 8.2301 3.2266 16 6 2.7280 9.3099 3.9779 17 1 2.8049 9.2726 5.0546 18 6 2.2435 10.4523 3.3558 19 7 2.5217 10.6804 2.0898 20 14 1.1968 11.6659 4.3156 21 1 1.0312 11.1823 5.7098 22 1 1.8635 12.9928 4.3282 23 1 -0.1358 11.7876 3.6718 24 6 4.2010 7.3550 3.6729 25 6 3.6982 5.9081 3.6898 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.8335 1.5426 -2.0829 32 1 2.0532 3.0852 -1.2225 33 1 4.1280 2.5183 -2.3919 34 1 4.3897 2.3704 -0.6374 35 1 5.1904 0.4565 -1.8216 36 1 2.4230 3.7345 3.1496 37 1 3.9054 5.6823 1.5572 38 1 1.1839 6.3591 2.7590 39 1 1.5328 6.2044 1.0197 40 1 1.5783 8.5904 1.8303 41 1 3.1284 8.0602 1.1310 42 1 2.1829 11.4786 1.6550 43 1 5.0424 7.4415 2.9853 44 1 4.5163 7.6462 4.6748 45 1 4.5252 5.2384 3.9261 46 1 2.9180 5.8028 4.4435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323265970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:25 Heat of formation + Delta-G solvation = -114.889383 kcal Electronic energy + Delta-G solvation = -27296.068845 eV Core-core repulsion = 23413.773936 eV Total energy + Delta-G solvation = -3882.294909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03922 -40.12914 -38.86690 -38.25459 -36.70228 -35.92620 -33.92663 -32.49933 -31.81525 -31.33684 -29.74759 -27.41049 -26.05403 -24.13518 -24.01903 -23.93412 -22.50747 -21.35981 -20.47727 -18.99032 -18.56707 -18.46323 -17.97447 -17.30707 -16.99240 -16.75038 -16.37603 -15.76477 -15.40176 -15.34638 -15.28403 -15.17228 -14.76719 -14.66649 -14.45324 -14.26158 -14.10182 -13.69565 -13.38687 -13.18259 -13.09233 -12.94955 -12.68942 -12.62909 -12.50417 -12.33912 -12.15339 -12.04531 -11.89482 -11.86447 -11.58429 -11.36869 -10.95084 -10.58067 -10.43943 -10.18735 -9.86109 -8.68142 -7.90167 -5.37171 0.32425 1.26775 1.45981 1.49000 1.59294 2.09497 2.39754 2.50980 3.22631 3.26860 3.40676 3.66275 3.82094 4.00977 4.04209 4.16313 4.19417 4.28325 4.35548 4.40689 4.44376 4.55922 4.63293 4.67449 4.77767 4.78922 4.83753 4.91860 4.96961 5.00767 5.03746 5.11757 5.24239 5.29810 5.35376 5.38848 5.42555 5.62142 5.68133 5.92630 6.22503 6.39400 6.67337 6.85242 6.93190 7.13087 7.82749 8.37804 9.16302 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.002902 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.527827 B = 9645.786333 C = 9816.598558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.570 5.570 4 C 0.098 3.902 5 C 0.071 3.929 6 O -0.586 6.586 7 C 0.504 3.496 8 O -0.545 6.545 9 C 0.503 3.497 10 O -0.530 6.530 11 N -0.683 5.683 12 C 0.162 3.838 13 C -0.131 4.131 14 C 0.187 3.813 15 N -0.608 5.608 16 C -0.268 4.268 17 H 0.067 0.933 18 C -0.044 4.044 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.265 1.265 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.144 3.856 25 C -0.125 4.125 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.394 0.606 36 H 0.416 0.584 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.000 1.000 42 H 0.250 0.750 43 H 0.016 0.984 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 -22.317 -6.426 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.302 5.302 4 C -0.024 4.024 5 C -0.007 4.007 6 O -0.394 6.394 7 C 0.286 3.714 8 O -0.423 6.423 9 C 0.284 3.716 10 O -0.408 6.408 11 N -0.335 5.335 12 C 0.058 3.942 13 C -0.172 4.172 14 C 0.061 3.939 15 N -0.332 5.332 16 C -0.399 4.399 17 H 0.085 0.915 18 C -0.240 4.240 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.189 1.189 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.018 3.982 25 C -0.165 4.165 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.244 0.756 36 H 0.253 0.747 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.211 -22.205 -6.616 23.170 hybrid contribution 0.034 1.141 0.449 1.226 sum -0.178 -21.064 -6.167 21.949 Atomic orbital electron populations 1.22111 0.94723 1.03529 1.01768 1.21690 0.94891 0.80229 1.04112 1.47932 1.61730 1.14575 1.05978 1.22287 0.94929 1.00512 0.84626 1.22473 0.95267 0.82781 1.00186 1.86388 1.31474 1.26032 1.95480 1.20185 0.79335 0.87222 0.84663 1.90727 1.50862 1.69285 1.31476 1.20253 0.79399 0.87315 0.84667 1.90674 1.48228 1.71125 1.30735 1.45986 1.64583 1.13057 1.09845 1.20877 0.96007 0.78195 0.99101 1.22333 0.97860 0.96327 1.00637 1.20380 0.95012 0.91746 0.86811 1.44313 1.36642 1.29040 1.23195 1.19464 1.38450 0.91793 0.90154 0.91532 1.25869 1.02491 0.98428 0.97242 1.70230 1.46429 1.27645 1.13097 0.85307 0.78341 0.78524 0.78841 1.18878 1.21904 1.21772 1.21008 0.89559 0.89168 0.98443 1.22174 1.01539 0.97802 0.94974 0.91753 0.89325 0.94196 0.87714 0.91035 0.87894 0.86958 0.91116 0.94931 0.75628 0.74723 0.90628 0.92279 0.92435 0.93874 0.98231 0.94067 0.96568 0.91670 0.89125 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.21 71.98 0.73 -1.77 16 2 C 0.11 1.97 6.06 86.38 0.52 2.49 16 3 N -0.57 -12.29 2.45 -823.39 -2.02 -14.31 16 4 C 0.10 1.86 5.36 86.38 0.46 2.32 16 5 C 0.07 1.30 6.73 71.98 0.48 1.78 16 6 O -0.59 -9.39 13.56 -148.98 -2.02 -11.42 16 7 C 0.50 13.35 7.62 87.27 0.67 14.01 16 8 O -0.55 -16.35 16.12 -3.25 -0.05 -16.41 16 9 C 0.50 14.10 7.51 87.27 0.66 14.76 16 10 O -0.53 -16.00 11.41 -3.24 -0.04 -16.04 16 11 N -0.68 -18.75 5.07 -443.67 -2.25 -21.00 16 12 C 0.16 5.18 2.41 45.03 0.11 5.29 16 13 C -0.13 -4.95 5.66 30.68 0.17 -4.78 16 14 C 0.19 8.97 5.31 86.36 0.46 9.43 16 15 N -0.61 -29.90 2.97 -699.10 -2.07 -31.98 16 16 C -0.27 -14.54 9.50 84.03 0.80 -13.75 16 17 H 0.07 3.51 7.91 -2.91 -0.02 3.49 16 18 C -0.04 -2.43 4.77 84.86 0.40 -2.02 16 19 N -0.93 -55.05 11.79 21.65 0.26 -54.80 16 20 Si 0.96 44.45 29.60 68.60 2.03 46.48 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 C 0.14 5.67 6.52 86.36 0.56 6.23 16 25 C -0.13 -3.82 5.55 30.67 0.17 -3.65 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.10 1.51 7.99 -2.39 -0.02 1.49 16 30 H 0.07 1.42 7.54 -2.38 -0.02 1.40 16 31 H 0.10 1.49 8.01 -2.39 -0.02 1.48 16 32 H 0.11 2.48 5.57 -2.38 -0.01 2.47 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 0.73 6.87 -2.39 -0.02 0.71 16 35 H 0.39 3.27 9.12 -74.06 -0.68 2.60 16 36 H 0.42 10.26 8.08 -92.71 -0.75 9.51 16 37 H 0.08 2.64 7.58 -2.39 -0.02 2.62 16 38 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.04 2.33 6.51 -2.39 -0.02 2.32 16 41 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 45 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -68.07 370.36 -0.39 -68.46 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.43 Total: 20.65 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 6.20 Total: 30.35 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -6.08 Total: -122.08 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -2.11 Total: -43.86 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -68.07 -0.39 -68.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323265970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.426 kcal (2) G-P(sol) polarization free energy of solvation -68.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds