Wall clock time and date at job start Fri Apr 10 2020 18:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46757 * 2 1 4 4 C 1.42899 * 114.00163 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47362 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47074 * 64.99884 * 5 4 3 7 7 C 1.34781 * 120.00242 * 180.02562 * 6 5 4 8 8 O 1.21356 * 119.99422 * 359.97438 * 7 6 5 9 9 C 1.49451 * 120.00373 * 180.02562 * 7 6 5 10 10 O 1.21348 * 119.99652 * 359.97438 * 9 7 6 11 11 N 1.34775 * 119.99841 * 179.97438 * 9 7 6 12 12 C 1.46503 * 119.99376 * 179.97438 * 11 9 7 13 13 C 1.53065 * 109.44591 * 84.79556 * 12 11 9 14 14 C 1.53192 * 109.29648 * 181.23295 * 13 12 11 15 15 N 1.46922 * 108.89269 * 305.57538 * 14 13 12 16 16 C 1.36942 * 120.62796 * 233.51528 * 15 14 13 17 17 H 1.08007 * 119.99636 * 151.83092 * 16 15 14 18 18 C 1.38806 * 120.00203 * 331.83144 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.08250 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07925 * 18 16 15 21 21 H 1.48503 * 109.47195 * 89.99708 * 20 18 16 22 22 H 1.48498 * 109.47355 * 210.00264 * 20 18 16 23 23 H 1.48504 * 109.46850 * 330.00278 * 20 18 16 24 24 C 1.46924 * 118.73925 * 53.53382 * 15 14 13 25 25 C 1.53049 * 109.45272 * 204.99544 * 12 11 9 26 26 H 1.08989 * 109.47452 * 60.00086 * 1 2 3 27 27 H 1.09007 * 109.46730 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47036 * 299.99212 * 1 2 3 29 29 H 1.09002 * 109.46891 * 240.00472 * 2 1 3 30 30 H 1.08997 * 109.47730 * 119.99888 * 2 1 3 31 31 H 1.08999 * 109.47366 * 60.00287 * 4 3 2 32 32 H 1.08999 * 109.46937 * 300.00130 * 4 3 2 33 33 H 1.09003 * 109.46756 * 305.00031 * 5 4 3 34 34 H 1.09000 * 109.47454 * 185.00014 * 5 4 3 35 35 H 0.97005 * 120.00355 * 0.02562 * 6 5 4 36 36 H 0.96995 * 120.00047 * 359.97438 * 11 9 7 37 37 H 1.08996 * 109.45813 * 324.96250 * 12 11 9 38 38 H 1.09005 * 109.39523 * 61.35360 * 13 12 11 39 39 H 1.09004 * 109.62174 * 301.25047 * 13 12 11 40 40 H 1.09003 * 109.58615 * 185.71531 * 14 13 12 41 41 H 1.08998 * 109.58372 * 65.43477 * 14 13 12 42 42 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.58325 * 66.18371 * 24 15 14 44 44 H 1.08996 * 109.58499 * 186.46256 * 24 15 14 45 45 H 1.09002 * 109.49883 * 58.67895 * 25 12 11 46 46 H 1.08997 * 109.52642 * 298.59203 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8252 2.9386 0.0001 6 7 3.3877 3.5601 1.2524 7 6 3.6284 4.8673 1.4762 8 8 4.2079 5.5292 0.6403 9 6 3.1825 5.5012 2.7540 10 8 2.6034 4.8392 3.5899 11 7 3.4237 6.8082 2.9778 12 6 2.9861 7.4297 4.2302 13 6 4.0432 7.1951 5.3121 14 6 3.5682 7.8197 6.6278 15 7 3.2440 9.2334 6.3936 16 6 3.8060 10.2152 7.1654 17 1 3.9527 11.2046 6.7580 18 6 4.1871 9.9387 8.4711 19 7 3.7226 8.8680 9.0797 20 14 5.3594 11.0861 9.3649 21 1 4.5818 12.1322 10.0764 22 1 6.1593 10.3103 10.3464 23 1 6.2690 11.7281 8.3821 24 6 2.3051 9.5737 5.3160 25 6 2.7955 8.9328 4.0140 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 3.8333 0.9769 -0.8908 32 1 3.8340 0.9766 0.8891 33 1 3.3490 3.4420 -0.8412 34 1 4.9080 3.0258 -0.0899 35 1 2.9247 3.0309 1.9208 36 1 3.8869 7.3372 2.3097 37 1 2.0419 6.9856 4.5454 38 1 4.9818 7.6582 5.0075 39 1 4.1935 6.1245 5.4509 40 1 4.3591 7.7449 7.3742 41 1 2.6808 7.2950 6.9819 42 1 3.9887 8.6749 9.9922 43 1 1.3139 9.1917 5.5608 44 1 2.2605 10.6564 5.1987 45 1 2.0585 9.0967 3.2277 46 1 3.7447 9.3822 3.7223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328663727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:00 Heat of formation + Delta-G solvation = -126.457394 kcal Electronic energy + Delta-G solvation = -26066.188138 eV Core-core repulsion = 22183.391602 eV Total energy + Delta-G solvation = -3882.796536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.79241 -40.11065 -39.08017 -38.79847 -36.48875 -35.75115 -33.91475 -32.45844 -31.82877 -31.29551 -30.17105 -27.35904 -25.74462 -23.95086 -23.75210 -23.67344 -22.87711 -21.49130 -21.07420 -19.59282 -18.66379 -18.14462 -17.83176 -17.24920 -16.96033 -16.84643 -16.49944 -16.28164 -15.68423 -15.44234 -15.35525 -15.15502 -14.87490 -14.73963 -14.35195 -14.16846 -14.08763 -13.82191 -13.21868 -13.14678 -13.04225 -12.89082 -12.67175 -12.63597 -12.55176 -12.24497 -12.14373 -12.08013 -12.01421 -11.85051 -11.58056 -11.40441 -10.74433 -10.58569 -10.55274 -10.35057 -10.16938 -8.70744 -7.87405 -5.33231 0.32454 1.29744 1.47885 1.49576 1.59202 2.12248 2.52056 2.57078 2.71945 3.28732 3.41346 3.66933 3.82149 3.85207 4.01958 4.14182 4.21418 4.28612 4.31669 4.45419 4.48092 4.51684 4.55088 4.64869 4.73332 4.78149 4.81809 4.90548 4.99267 5.03790 5.04602 5.10978 5.14022 5.28333 5.30205 5.34089 5.45688 5.64556 5.69976 5.90403 6.23417 6.33682 6.39310 6.71728 6.93754 7.14030 7.84649 8.36950 9.19778 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026922 B = 0.002269 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.784325 B =12337.413055 C =12591.427576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.414 6.414 4 C 0.051 3.949 5 C 0.117 3.883 6 N -0.686 5.686 7 C 0.513 3.487 8 O -0.541 6.541 9 C 0.502 3.498 10 O -0.547 6.547 11 N -0.682 5.682 12 C 0.159 3.841 13 C -0.132 4.132 14 C 0.183 3.817 15 N -0.610 5.610 16 C -0.261 4.261 17 H 0.072 0.928 18 C -0.054 4.054 19 N -0.937 5.937 20 Si 0.968 3.032 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.269 1.269 24 C 0.143 3.857 25 C -0.125 4.125 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.418 0.582 36 H 0.418 0.582 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.057 0.943 41 H -0.005 1.005 42 H 0.250 0.750 43 H 0.016 0.984 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -16.713 -21.720 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.334 6.334 4 C -0.026 4.026 5 C -0.005 4.005 6 N -0.339 5.339 7 C 0.293 3.707 8 O -0.419 6.419 9 C 0.283 3.717 10 O -0.425 6.425 11 N -0.334 5.334 12 C 0.055 3.945 13 C -0.172 4.172 14 C 0.056 3.944 15 N -0.334 5.334 16 C -0.391 4.391 17 H 0.090 0.910 18 C -0.249 4.249 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.193 1.193 24 C 0.017 3.983 25 C -0.164 4.164 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.255 0.745 36 H 0.256 0.744 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.013 0.987 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.274 -16.607 -21.596 27.273 hybrid contribution 0.546 0.197 1.097 1.241 sum -0.728 -16.411 -20.499 26.269 Atomic orbital electron populations 1.21784 0.93748 1.03212 1.02394 1.22634 0.95785 0.82686 1.01255 1.87919 1.21546 1.28238 1.95711 1.22844 0.81637 0.94725 1.03356 1.21734 1.01105 0.92411 0.85299 1.45766 1.57637 1.08892 1.21653 1.19954 0.80308 0.83630 0.86759 1.90747 1.41696 1.62995 1.46449 1.20367 0.80312 0.83517 0.87517 1.90766 1.41820 1.62801 1.47099 1.45941 1.57456 1.09250 1.20711 1.20905 0.97288 0.93983 0.82316 1.22344 0.98721 0.99516 0.96660 1.20476 0.97238 0.83341 0.93353 1.44356 1.49879 1.02404 1.36728 1.19536 1.33537 0.93525 0.92510 0.91013 1.25858 1.02413 0.99686 0.96959 1.70192 1.45983 1.30091 1.12034 0.85268 0.78939 0.78093 0.78081 1.21100 1.22136 1.19337 1.21032 0.91355 0.98720 0.87233 1.22175 1.02944 0.92322 0.98964 0.92424 0.89272 0.92965 0.91762 0.92447 0.88762 0.91196 0.90597 0.88034 0.74481 0.74416 0.91092 0.92103 0.92881 0.92500 0.98699 0.94135 0.96565 0.91333 0.88967 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.05 0.56 6.66 71.98 0.48 1.03 16 3 O -0.41 -6.32 10.29 -148.98 -1.53 -7.85 16 4 C 0.05 0.52 6.07 71.98 0.44 0.96 16 5 C 0.12 1.67 6.06 86.38 0.52 2.20 16 6 N -0.69 -13.84 5.50 -464.40 -2.55 -16.39 16 7 C 0.51 13.22 7.89 87.27 0.69 13.91 16 8 O -0.54 -15.41 16.48 -3.27 -0.05 -15.47 16 9 C 0.50 14.98 7.85 87.27 0.69 15.67 16 10 O -0.55 -19.20 16.14 -3.24 -0.05 -19.25 16 11 N -0.68 -19.54 5.07 -443.68 -2.25 -21.79 16 12 C 0.16 5.38 2.41 45.03 0.11 5.49 16 13 C -0.13 -5.25 5.66 30.68 0.17 -5.08 16 14 C 0.18 9.08 5.30 86.36 0.46 9.54 16 15 N -0.61 -30.55 3.00 -699.10 -2.09 -32.64 16 16 C -0.26 -14.24 9.58 84.03 0.81 -13.44 16 17 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 18 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 19 N -0.94 -56.20 11.20 21.65 0.24 -55.95 16 20 Si 0.97 44.94 29.59 68.60 2.03 46.97 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 C 0.14 5.70 6.52 86.36 0.56 6.26 16 25 C -0.12 -3.90 5.55 30.67 0.17 -3.73 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.42 8.28 7.94 -92.70 -0.74 7.54 16 36 H 0.42 10.39 8.07 -92.71 -0.75 9.64 16 37 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 38 H 0.06 2.37 8.14 -2.38 -0.02 2.36 16 39 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.06 3.20 6.06 -2.39 -0.01 3.18 16 41 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 45 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -70.37 379.24 -0.51 -70.88 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -0.50 Total: 22.22 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: 6.25 Total: 29.27 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -6.65 Total: -126.78 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -1.64 Total: -42.57 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.37 -0.51 -70.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328663727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.575 kcal (2) G-P(sol) polarization free energy of solvation -70.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds