Wall clock time and date at job start Fri Apr 10 2020 18:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 114.00255 * 2 1 4 4 H 1.09002 * 109.47122 * 330.00524 * 3 2 1 5 5 C 1.53002 * 109.46899 * 90.00086 * 3 2 1 6 6 C 1.52996 * 109.47317 * 210.00584 * 3 2 1 7 7 N 1.46500 * 109.47411 * 64.99982 * 6 3 2 8 8 C 1.34774 * 120.00061 * 180.02562 * 7 6 3 9 9 O 1.21353 * 120.00378 * 0.02562 * 8 7 6 10 10 C 1.49448 * 120.00037 * 179.97438 * 8 7 6 11 11 O 1.21351 * 119.99843 * 353.52103 * 10 8 7 12 12 N 1.34779 * 120.00294 * 173.51944 * 10 8 7 13 13 C 1.47076 * 120.88435 * 181.26679 * 12 10 8 14 14 C 1.53692 * 108.28367 * 128.74996 * 13 12 10 15 15 N 1.46902 * 109.25209 * 54.08089 * 14 13 12 16 16 C 1.46900 * 110.99916 * 172.61230 * 15 14 13 17 17 C 1.50699 * 109.47079 * 294.30074 * 16 15 14 18 18 H 1.08005 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00501 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99315 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00272 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46978 * 60.00514 * 21 19 17 23 23 H 1.48500 * 109.47138 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47468 * 299.99940 * 21 19 17 25 25 C 1.46900 * 111.27130 * 296.75475 * 15 14 13 26 26 C 1.47073 * 120.87762 * 1.53903 * 12 10 8 27 27 H 1.09002 * 109.46322 * 299.99710 * 1 2 3 28 28 H 1.09001 * 109.46785 * 59.99332 * 1 2 3 29 29 H 1.08990 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47010 * 300.00161 * 5 3 2 31 31 H 1.09002 * 109.46876 * 60.00288 * 5 3 2 32 32 H 1.09003 * 109.47011 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47644 * 185.00319 * 6 3 2 34 34 H 1.09004 * 109.47007 * 305.00131 * 6 3 2 35 35 H 0.97003 * 119.99880 * 359.97438 * 7 6 3 36 36 H 1.09000 * 109.62633 * 248.52042 * 13 12 10 37 37 H 1.09008 * 109.62829 * 9.09727 * 13 12 10 38 38 H 1.08997 * 109.64849 * 294.08419 * 14 13 12 39 39 H 1.08995 * 109.42513 * 173.94384 * 14 13 12 40 40 H 1.09001 * 109.47378 * 54.29547 * 16 15 14 41 41 H 1.08994 * 109.47384 * 174.30398 * 16 15 14 42 42 H 0.97004 * 119.99551 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.49620 * 303.15461 * 25 15 14 44 44 H 1.08999 * 109.49779 * 183.06464 * 25 15 14 45 45 H 1.08995 * 109.63148 * 350.89491 * 26 12 10 46 46 H 1.09000 * 109.63135 * 111.48369 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2178 1.7712 1.4425 6 6 3.3589 1.2632 -0.7213 7 7 3.1476 0.9331 -2.1329 8 6 4.2012 0.8396 -2.9682 9 8 5.3250 1.0284 -2.5509 10 6 3.9857 0.5023 -4.4080 11 8 2.8787 0.1975 -4.8007 12 7 5.0209 0.5366 -5.2705 13 6 4.8255 0.2352 -6.6967 14 6 5.4448 1.3758 -7.5198 15 7 6.8433 1.5640 -7.1112 16 6 7.5241 2.5236 -7.9908 17 6 7.6232 1.9487 -9.3803 18 1 7.2210 0.9683 -9.5890 19 6 8.2272 2.6741 -10.3852 20 7 8.7175 3.8677 -10.1309 21 14 8.3506 1.9612 -12.1073 22 1 6.9872 1.6909 -12.6299 23 1 9.0388 2.9312 -12.9965 24 1 9.1245 0.6945 -12.0645 25 6 6.9363 1.9806 -5.7056 26 6 6.3769 0.8706 -4.8093 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.2570 1.8013 1.9563 31 1 2.8831 1.0773 1.9563 32 1 2.6616 2.7668 1.4426 33 1 3.8428 2.2368 -0.6444 34 1 3.9931 0.5050 -0.2619 35 1 2.2494 0.7811 -2.4663 36 1 5.3166 -0.7063 -6.9426 37 1 3.7596 0.1628 -6.9130 38 1 4.8883 2.2968 -7.3467 39 1 5.4066 1.1208 -8.5789 40 1 6.9567 3.4537 -8.0221 41 1 8.5250 2.7212 -7.6073 42 1 9.1421 4.3783 -10.8379 43 1 6.3589 2.8932 -5.5577 44 1 7.9796 2.1642 -5.4489 45 1 6.3372 1.2187 -3.7771 46 1 7.0143 -0.0109 -4.8772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330022476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:03 Heat of formation + Delta-G solvation = -86.861388 kcal Electronic energy + Delta-G solvation = -26485.329906 eV Core-core repulsion = 22604.250382 eV Total energy + Delta-G solvation = -3881.079524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93156 -39.22243 -38.42778 -37.57205 -35.41745 -34.22369 -32.39084 -32.16321 -30.73274 -28.54295 -27.56541 -26.86988 -25.59787 -24.07017 -22.88675 -22.04570 -21.68802 -20.65359 -19.38285 -17.68466 -17.36719 -17.08106 -16.34677 -16.20528 -16.00872 -15.66609 -15.36810 -14.73586 -14.64661 -14.46941 -14.43171 -14.06744 -13.73968 -13.54416 -13.39478 -13.13191 -12.93762 -12.77679 -12.65967 -12.31673 -12.00146 -11.91325 -11.42024 -11.28955 -11.23572 -10.96492 -10.78385 -10.71850 -10.59173 -10.53770 -10.19953 -9.88925 -9.53368 -9.36178 -8.94991 -8.56834 -8.43569 -7.29457 -6.04288 -4.06187 1.38854 2.26908 3.16206 3.22598 3.33037 3.37164 3.39886 3.46932 4.21241 4.26655 4.41171 4.49415 4.60216 4.86005 4.89833 4.93505 5.08454 5.16019 5.20694 5.29833 5.30985 5.36979 5.42576 5.46888 5.59278 5.66122 5.71147 5.81720 5.86653 5.95616 6.31674 6.37456 6.45072 6.52897 6.60665 6.66034 6.90554 7.24982 7.30138 7.38422 7.69164 7.76532 7.97805 8.04386 8.14865 8.50485 9.00748 9.58148 11.06454 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.035189 B = 0.002367 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.500989 B =11825.910604 C =12269.376132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.381 6.381 3 C 0.072 3.928 4 H 0.070 0.930 5 C -0.172 4.172 6 C 0.119 3.881 7 N -0.697 5.697 8 C 0.513 3.487 9 O -0.508 6.508 10 C 0.502 3.498 11 O -0.536 6.536 12 N -0.569 5.569 13 C 0.110 3.890 14 C 0.052 3.948 15 N -0.538 5.538 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.063 0.937 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.042 3.958 26 C 0.059 3.941 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.413 0.587 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.025 0.975 39 H 0.099 0.901 40 H -0.009 1.009 41 H 0.032 0.968 42 H 0.262 0.738 43 H 0.024 0.976 44 H 0.082 0.918 45 H 0.149 0.851 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.025 -4.572 22.012 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.300 6.300 3 C 0.013 3.987 4 H 0.088 0.912 5 C -0.230 4.230 6 C -0.004 4.004 7 N -0.350 5.350 8 C 0.295 3.705 9 O -0.385 6.385 10 C 0.284 3.716 11 O -0.414 6.414 12 N -0.301 5.301 13 C -0.012 4.012 14 C -0.077 4.077 15 N -0.263 5.263 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.087 4.087 26 C -0.062 4.062 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.250 0.750 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.117 0.883 40 H 0.008 0.992 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.042 0.958 44 H 0.100 0.900 45 H 0.165 0.835 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.342 -5.050 21.965 26.714 hybrid contribution -0.795 0.698 -1.140 1.555 sum -15.137 -4.352 20.825 26.110 Atomic orbital electron populations 1.22840 0.80692 1.03135 1.00084 1.87989 1.19958 1.27009 1.95089 1.22396 0.94291 0.85562 0.96404 0.91178 1.22200 1.03007 1.02180 0.95609 1.21651 0.96473 1.02644 0.79637 1.45674 1.10417 1.69620 1.09257 1.20336 0.84923 0.77705 0.87532 1.90376 1.22075 1.49314 1.76754 1.19858 0.85057 0.80058 0.86600 1.90727 1.23534 1.48663 1.78485 1.48181 1.08850 1.64214 1.08816 1.22153 1.01773 0.99471 0.77798 1.22407 0.89308 0.95586 1.00360 1.62118 1.12886 1.50057 1.01237 1.19721 0.93487 0.88663 0.91259 1.21112 1.37670 1.02832 0.93223 0.91857 1.25000 0.95517 0.94890 0.99216 1.69953 1.39054 1.11358 1.33377 0.86541 0.78243 0.78780 0.83724 1.20263 1.21390 1.20133 1.22416 1.00814 0.95138 0.90347 1.23391 0.80434 0.99443 1.02969 0.93966 0.93727 0.89366 0.91804 0.91165 0.90982 0.89286 0.89793 0.75020 0.90230 0.89189 0.95701 0.88305 0.99152 0.94988 0.92841 0.95778 0.89964 0.83498 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.05 10.29 -35.23 -0.36 -3.41 16 3 C 0.07 0.45 2.75 -26.73 -0.07 0.38 16 4 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 5 C -0.17 -0.83 9.53 37.16 0.35 -0.48 16 6 C 0.12 0.96 5.34 -4.04 -0.02 0.94 16 7 N -0.70 -7.21 5.49 -60.73 -0.33 -7.55 16 8 C 0.51 6.86 7.81 -11.59 -0.09 6.77 16 9 O -0.51 -7.41 13.04 5.49 0.07 -7.34 16 10 C 0.50 7.76 7.77 -11.58 -0.09 7.67 16 11 O -0.54 -8.96 15.95 5.50 0.09 -8.87 16 12 N -0.57 -9.22 3.00 -172.69 -0.52 -9.74 16 13 C 0.11 1.82 6.62 -3.37 -0.02 1.80 16 14 C 0.05 1.02 5.47 -3.46 -0.02 1.00 16 15 N -0.54 -11.57 4.62 -235.47 -1.09 -12.66 16 16 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 17 C -0.51 -14.15 8.41 -34.44 -0.29 -14.43 16 18 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 21 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.04 0.78 5.62 -3.69 -0.02 0.75 16 26 C 0.06 0.94 6.35 -3.60 -0.02 0.91 16 27 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 28 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.27 7.87 -51.93 -0.41 -0.14 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.41 4.00 7.96 -40.82 -0.32 3.68 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.42 7.07 -51.92 -0.37 1.06 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 40 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 41 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 1.47 7.99 -51.93 -0.41 1.05 16 45 H 0.15 2.27 3.92 -56.54 -0.22 2.05 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -32.23 373.24 -7.59 -39.83 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.47 Total: 0.44 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 0.68 Total: 13.03 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -1.20 Total: -55.80 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.20 Total: -19.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.23 -7.59 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330022476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.035 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds