Wall clock time and date at job start Fri Apr 10 2020 18:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47454 * 2 1 4 4 C 1.53001 * 109.47387 * 239.99815 * 2 1 3 5 5 N 1.46506 * 109.46927 * 119.99975 * 2 1 3 6 6 C 1.34776 * 120.00027 * 59.99957 * 5 2 1 7 7 O 1.21285 * 119.99659 * 359.97438 * 6 5 2 8 8 C 1.50694 * 120.00262 * 180.02562 * 6 5 2 9 9 N 1.46499 * 109.47550 * 180.02562 * 8 6 5 10 10 C 1.34777 * 120.00199 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99750 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99928 * 180.27479 * 10 9 8 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.47474 * 110.99554 * 265.96989 * 13 12 10 15 15 C 1.53515 * 87.93229 * 221.29624 * 14 13 12 16 16 O 1.42896 * 114.17154 * 272.38042 * 15 14 13 17 17 C 1.50700 * 114.34348 * 139.68344 * 15 14 13 18 18 H 1.07998 * 120.00070 * 266.07338 * 17 15 14 19 19 C 1.37876 * 120.00021 * 86.08008 * 17 15 14 20 20 N 1.31512 * 120.00084 * 179.97438 * 19 17 15 21 21 Si 1.86801 * 119.99729 * 359.97438 * 19 17 15 22 22 H 1.48496 * 109.47334 * 90.00246 * 21 19 17 23 23 H 1.48503 * 109.47042 * 209.99606 * 21 19 17 24 24 H 1.48492 * 109.47565 * 329.99844 * 21 19 17 25 25 C 1.47473 * 110.99654 * 170.00034 * 13 12 10 26 26 H 1.08999 * 109.47001 * 300.00539 * 1 2 3 27 27 H 1.09001 * 109.46576 * 60.00009 * 1 2 3 28 28 H 1.08998 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47123 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46869 * 300.00147 * 3 2 1 31 31 H 1.09006 * 109.46826 * 59.99700 * 3 2 1 32 32 H 1.09007 * 109.46722 * 300.00355 * 4 2 1 33 33 H 1.08994 * 109.46844 * 59.99909 * 4 2 1 34 34 H 1.08997 * 109.47361 * 180.02562 * 4 2 1 35 35 H 0.96996 * 119.99691 * 240.00141 * 5 2 1 36 36 H 1.08998 * 109.47333 * 59.99721 * 8 6 5 37 37 H 1.09002 * 109.47271 * 300.00155 * 8 6 5 38 38 H 0.97000 * 119.99484 * 359.97438 * 9 8 6 39 39 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 40 40 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 41 41 H 1.09001 * 113.48384 * 336.06306 * 14 13 12 42 42 H 1.09004 * 113.47653 * 106.53095 * 14 13 12 43 43 H 0.96703 * 114.00033 * 273.84286 * 16 15 14 44 44 H 0.96997 * 119.99838 * 179.97438 * 20 19 17 45 45 H 1.09002 * 113.47545 * 253.46383 * 25 13 12 46 46 H 1.08993 * 113.48362 * 23.87626 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9810 1.4095 7 8 0.9950 -2.5702 0.6113 8 6 2.1945 -2.6912 2.6402 9 7 1.7067 -4.0726 2.6399 10 6 2.0316 -4.9023 3.6512 11 8 2.7281 -4.5053 4.5613 12 6 1.5349 -6.3251 3.6477 13 7 2.0280 -7.0188 4.8450 14 6 3.2827 -7.7392 4.5593 15 6 2.7426 -8.9016 5.4041 16 8 3.0330 -8.7953 6.7992 17 6 3.0326 -10.2679 4.8384 18 1 2.3040 -10.7577 4.2093 19 6 4.2279 -10.8929 5.1240 20 7 4.4808 -12.0854 4.6307 21 14 5.4883 -10.0455 6.2116 22 1 5.2438 -10.4111 7.6300 23 1 6.8531 -10.4780 5.8173 24 1 5.3701 -8.5739 6.0524 25 6 1.3751 -8.3318 5.0015 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7490 -1.2492 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7217 -1.2490 35 1 2.5759 -0.2192 1.8347 36 1 1.8308 -2.1773 3.5300 37 1 3.2845 -2.6912 2.6408 38 1 1.1494 -4.3899 1.9122 39 1 0.4449 -6.3294 3.6482 40 1 1.8998 -6.8350 2.7562 41 1 3.4093 -7.9901 3.5061 42 1 4.1642 -7.2632 4.9888 43 1 3.8949 -9.1548 7.0501 44 1 5.3219 -12.5249 4.8313 45 1 0.6399 -8.3581 5.8058 46 1 0.9917 -8.7404 4.0666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364387378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:15 Heat of formation + Delta-G solvation = -95.833801 kcal Electronic energy + Delta-G solvation = -26253.971710 eV Core-core repulsion = 22372.503113 eV Total energy + Delta-G solvation = -3881.468597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64676 -41.23774 -40.04616 -37.67419 -36.71599 -35.41956 -34.53768 -33.29576 -31.66373 -29.17610 -28.25824 -28.20867 -27.65622 -26.89184 -24.40840 -22.27636 -21.52887 -20.93719 -20.60605 -19.44046 -18.80881 -18.17944 -17.60573 -17.23460 -17.06746 -16.82956 -16.44977 -16.22680 -15.62709 -15.41693 -15.12494 -15.07559 -14.77768 -14.56890 -14.52234 -14.23699 -13.93996 -13.77215 -13.53894 -13.34062 -13.06871 -13.02953 -12.95440 -12.77645 -12.51979 -12.44070 -12.12699 -12.11528 -12.00543 -11.90857 -11.13218 -10.98573 -10.95850 -10.76065 -10.42645 -10.27878 -10.11020 -9.73871 -8.45215 -6.53778 1.20545 1.29282 1.35603 1.46423 1.61594 1.70334 2.15122 2.36728 2.77519 3.09363 3.51745 3.58757 3.77112 3.90904 3.92466 3.97644 4.12436 4.15064 4.18174 4.30277 4.36919 4.37421 4.53961 4.69141 4.72037 4.75700 4.80318 4.86190 4.91809 4.94508 4.99464 5.06679 5.22079 5.25724 5.29596 5.31125 5.34949 5.38622 5.56387 6.00554 6.08881 6.46268 6.50380 6.51978 6.75856 7.12868 7.13757 7.21960 8.70162 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.002308 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.803298 B =12127.295696 C =12166.511338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.164 3.836 3 C -0.150 4.150 4 C -0.163 4.163 5 N -0.708 5.708 6 C 0.517 3.483 7 O -0.559 6.559 8 C 0.100 3.900 9 N -0.715 5.715 10 C 0.523 3.477 11 O -0.561 6.561 12 C -0.005 4.005 13 N -0.461 5.461 14 C -0.022 4.022 15 C 0.182 3.818 16 O -0.556 6.556 17 C -0.538 4.538 18 H 0.060 0.940 19 C 0.027 3.973 20 N -0.924 5.924 21 Si 0.916 3.084 22 H -0.253 1.253 23 H -0.282 1.282 24 H -0.247 1.247 25 C 0.028 3.972 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.416 0.584 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.416 0.584 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.349 0.651 44 H 0.272 0.728 45 H 0.086 0.914 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.181 28.270 -10.940 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.079 3.921 3 C -0.207 4.207 4 C -0.221 4.221 5 N -0.361 5.361 6 C 0.303 3.697 7 O -0.438 6.438 8 C -0.028 4.028 9 N -0.372 5.372 10 C 0.309 3.691 11 O -0.438 6.438 12 C -0.137 4.137 13 N -0.184 5.184 14 C -0.152 4.152 15 C 0.141 3.859 16 O -0.367 6.367 17 C -0.576 4.576 18 H 0.078 0.922 19 C -0.174 4.174 20 N -0.562 5.562 21 Si 0.742 3.258 22 H -0.179 1.179 23 H -0.208 1.208 24 H -0.172 1.172 25 C -0.101 4.101 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.253 0.747 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.255 0.745 39 H 0.146 0.854 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.201 0.799 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.685 28.835 -10.373 31.167 hybrid contribution 1.273 -0.972 -0.375 1.645 sum -4.412 27.863 -10.748 30.188 Atomic orbital electron populations 1.22198 0.94596 1.02553 1.02667 1.20503 0.94179 0.93115 0.84271 1.22059 1.02168 0.92371 1.04118 1.22206 1.01101 1.01435 0.97369 1.46030 1.53307 1.10941 1.25828 1.20472 0.79758 0.82757 0.86730 1.90652 1.39009 1.66770 1.47386 1.21126 1.01347 0.83126 0.97162 1.45616 1.54586 1.11149 1.25816 1.20689 0.79563 0.87829 0.81000 1.90688 1.38598 1.77573 1.36984 1.22727 1.03558 0.92175 0.95238 1.68748 1.04062 1.14540 1.31001 1.24844 0.94481 0.95320 1.00506 1.20247 0.95120 0.91791 0.78714 1.86464 1.39523 1.84435 1.26281 1.21463 1.03238 1.01370 1.31533 0.92207 1.25753 0.99870 0.95136 0.96623 1.69984 1.25708 1.15058 1.45446 0.86358 0.78956 0.80307 0.80191 1.17875 1.20817 1.17161 1.23926 0.96772 0.87816 1.01567 0.92230 0.90592 0.92969 0.91064 0.89790 0.90933 0.93011 0.90561 0.92395 0.74675 0.87609 0.87996 0.74517 0.85351 0.89108 0.90266 0.92441 0.79887 0.91811 0.89599 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.40 71.98 0.60 -1.46 16 2 C 0.16 1.75 1.06 3.60 0.00 1.76 16 3 C -0.15 -0.75 8.59 71.98 0.62 -0.13 16 4 C -0.16 -2.16 8.40 71.98 0.60 -1.55 16 5 N -0.71 -7.75 5.11 -422.91 -2.16 -9.91 16 6 C 0.52 8.74 7.32 87.66 0.64 9.38 16 7 O -0.56 -12.80 11.88 -3.05 -0.04 -12.83 16 8 C 0.10 1.78 6.15 85.63 0.53 2.31 16 9 N -0.71 -16.16 5.53 -466.79 -2.58 -18.74 16 10 C 0.52 15.85 7.90 87.66 0.69 16.54 16 11 O -0.56 -21.84 16.43 -3.04 -0.05 -21.89 16 12 C -0.01 -0.16 5.30 85.56 0.45 0.29 16 13 N -0.46 -18.24 5.82 -932.93 -5.43 -23.67 16 14 C -0.02 -0.96 6.54 83.57 0.55 -0.42 16 15 C 0.18 8.81 1.09 -11.19 -0.01 8.80 16 16 O -0.56 -28.10 13.32 -148.98 -1.98 -30.08 16 17 C -0.54 -29.70 9.27 25.60 0.24 -29.46 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 19 C 0.03 1.51 5.47 84.65 0.46 1.97 16 20 N -0.92 -54.91 13.96 21.45 0.30 -54.61 16 21 Si 0.92 42.34 24.41 68.60 1.67 44.01 16 22 H -0.25 -11.07 7.06 99.48 0.70 -10.36 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.25 -11.14 5.46 99.48 0.54 -10.60 16 25 C 0.03 1.11 7.09 83.57 0.59 1.70 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.98 6.17 -2.39 -0.01 0.96 16 29 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.05 1.00 6.17 -2.38 -0.01 0.99 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.42 2.29 8.47 -92.71 -0.79 1.50 16 36 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.42 8.51 7.44 -92.71 -0.69 7.82 16 39 H 0.13 3.02 8.08 -2.38 -0.02 3.00 16 40 H 0.09 2.44 7.30 -2.39 -0.02 2.42 16 41 H 0.08 3.30 7.38 -2.39 -0.02 3.28 16 42 H 0.06 2.69 7.11 -2.38 -0.02 2.67 16 43 H 0.35 16.84 3.18 -74.06 -0.24 16.61 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.09 3.35 7.87 -2.39 -0.02 3.33 16 Total: -1.00 -74.91 365.62 -5.16 -80.07 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -0.87 Total: 37.92 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.97 Total: 9.74 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -9.87 Total: -106.92 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -2.07 Total: -64.81 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.67 Total: 44.01 kcal Total: -74.91 -5.16 -80.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364387378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.768 kcal (2) G-P(sol) polarization free energy of solvation -74.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds