Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46496 * 109.47042 * 2 1 4 4 C 1.46499 * 119.99913 * 270.00095 * 3 2 1 5 5 C 1.50708 * 109.47166 * 269.99989 * 4 3 2 6 6 H 1.08006 * 119.99705 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00079 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99942 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00294 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46908 * 89.99860 * 9 7 5 11 11 H 1.48499 * 109.47221 * 210.00154 * 9 7 5 12 12 H 1.48505 * 109.46936 * 330.00309 * 9 7 5 13 13 C 1.34777 * 120.00218 * 89.99930 * 3 2 1 14 14 O 1.21273 * 120.00219 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99674 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46964 * 179.97438 * 15 13 3 17 17 C 1.46842 * 111.00164 * 170.00025 * 16 15 13 18 18 C 1.53029 * 109.52684 * 185.84151 * 17 16 15 19 19 C 1.53123 * 109.27545 * 300.81961 * 18 17 16 20 20 O 1.42901 * 109.52408 * 297.68470 * 19 18 17 21 21 C 1.50706 * 109.52377 * 177.56128 * 19 18 17 22 22 N 1.34777 * 120.00195 * 155.12758 * 21 19 18 23 23 O 1.21282 * 119.99717 * 335.12423 * 21 19 18 24 24 C 1.53115 * 109.21417 * 57.61972 * 19 18 17 25 25 C 1.46848 * 110.99914 * 294.20917 * 16 15 13 26 26 H 1.08992 * 109.46846 * 300.00017 * 1 2 3 27 27 H 1.08995 * 109.46836 * 60.00166 * 1 2 3 28 28 H 1.09000 * 109.46845 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46612 * 239.99834 * 2 1 3 30 30 H 1.09004 * 109.47015 * 119.99987 * 2 1 3 31 31 H 1.08996 * 109.47208 * 30.00056 * 4 3 2 32 32 H 1.09001 * 109.47138 * 150.00399 * 4 3 2 33 33 H 0.96998 * 119.99853 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47008 * 59.99809 * 15 13 3 35 35 H 1.08995 * 109.47271 * 299.99707 * 15 13 3 36 36 H 1.09001 * 109.46203 * 65.82043 * 17 16 15 37 37 H 1.09004 * 109.46228 * 305.85597 * 17 16 15 38 38 H 1.09002 * 109.50941 * 180.88132 * 18 17 16 39 39 H 1.09001 * 109.50524 * 60.75500 * 18 17 16 40 40 H 0.96698 * 114.00169 * 179.87475 * 20 19 18 41 41 H 0.96998 * 119.99395 * 359.97438 * 22 21 19 42 42 H 0.97000 * 119.99875 * 179.97438 * 22 21 19 43 43 H 1.09000 * 109.50414 * 62.32178 * 24 19 18 44 44 H 1.09003 * 109.50379 * 182.43705 * 24 19 18 45 45 H 1.08999 * 109.46555 * 294.17659 * 25 16 15 46 46 H 1.09001 * 109.46111 * 54.15398 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8774 8 7 5.3914 2.1833 -3.2574 9 14 3.0132 3.4359 -3.9288 10 1 3.1158 4.8561 -3.5068 11 1 3.4068 3.3136 -5.3554 12 1 1.6135 2.9692 -3.7596 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3110 2.2058 3.5889 17 6 1.8591 1.6399 4.8663 18 6 2.0747 2.6630 5.9837 19 6 3.5613 3.0218 6.0606 20 8 4.3178 1.8551 6.3898 21 6 3.7715 4.0736 7.1193 22 7 4.9714 4.1935 7.7212 23 8 2.8609 4.8120 7.4296 24 6 4.0199 3.5629 4.7036 25 6 3.7463 2.5143 3.6230 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0283 32 1 2.0956 3.1410 -1.1384 33 1 5.7177 2.5744 -4.0829 34 1 2.6229 0.4187 2.5298 35 1 0.9446 1.0114 2.5303 36 1 2.4291 0.7371 5.0855 37 1 0.7995 1.3930 4.7995 38 1 1.7537 2.2369 6.9343 39 1 1.4941 3.5609 5.7721 40 1 5.2704 2.0089 6.4534 41 1 5.6996 3.6026 7.4732 42 1 5.1068 4.8707 8.4024 43 1 3.4708 4.4754 4.4712 44 1 5.0876 3.7793 4.7400 45 1 4.3075 1.6074 3.8480 46 1 4.0575 2.9027 2.6532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434468641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -143.677997 kcal Electronic energy + Delta-G solvation = -27498.391478 eV Core-core repulsion = 23614.848200 eV Total energy + Delta-G solvation = -3883.543277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73063 -40.78489 -39.12288 -37.34294 -36.76222 -34.86705 -34.55660 -33.25056 -31.95593 -31.81503 -30.06965 -28.25691 -25.51547 -24.40844 -24.31602 -23.61444 -22.00292 -20.82283 -19.80985 -19.40453 -19.08631 -18.13551 -17.78022 -17.41149 -17.12340 -16.59781 -16.35714 -15.99372 -15.68266 -15.57127 -15.37034 -15.14929 -14.70519 -14.65614 -14.51486 -14.23278 -13.94654 -13.77063 -13.52332 -13.22740 -13.06909 -12.97491 -12.61791 -12.56419 -12.50352 -12.36150 -12.26130 -12.12521 -12.01010 -11.82668 -11.72916 -11.35938 -10.82379 -10.78267 -10.71389 -10.40511 -9.35756 -9.21423 -8.33547 -6.37633 1.32410 1.36404 1.39553 1.44536 1.87098 2.22588 2.31125 2.34401 2.93669 3.01207 3.15823 3.50494 3.58676 3.70999 3.89808 4.11027 4.14539 4.22343 4.32855 4.40595 4.41392 4.47466 4.54227 4.65008 4.67900 4.76412 4.82998 4.92504 4.96252 4.99111 5.03484 5.04905 5.06952 5.24506 5.41904 5.48761 5.70117 5.77733 5.94953 6.15978 6.18995 6.26807 6.63263 6.63311 6.78908 7.17084 7.23706 7.51820 8.83242 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.018181 B = 0.003380 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.680740 B = 8282.550162 C = 9100.074917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.532 4.532 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.240 1.240 13 C 0.498 3.502 14 O -0.575 6.575 15 C 0.052 3.948 16 N -0.540 5.540 17 C 0.065 3.935 18 C -0.089 4.089 19 C 0.132 3.868 20 O -0.543 6.543 21 C 0.499 3.501 22 N -0.830 5.830 23 O -0.579 6.579 24 C -0.127 4.127 25 C 0.061 3.939 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.015 0.985 33 H 0.268 0.732 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.392 0.608 41 H 0.416 0.584 42 H 0.411 0.589 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 -5.494 20.718 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.048 0.952 7 C -0.185 4.185 8 N -0.585 5.585 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.163 1.163 13 C 0.286 3.714 14 O -0.455 6.455 15 C -0.078 4.078 16 N -0.266 5.266 17 C -0.062 4.062 18 C -0.128 4.128 19 C 0.087 3.913 20 O -0.351 6.351 21 C 0.283 3.717 22 N -0.395 5.395 23 O -0.458 6.458 24 C -0.166 4.166 25 C -0.066 4.066 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.243 0.757 41 H 0.248 0.752 42 H 0.243 0.757 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.064 0.936 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.478 -4.358 20.574 22.005 hybrid contribution 1.700 0.356 -0.700 1.872 sum -4.778 -4.002 19.873 20.828 Atomic orbital electron populations 1.22159 0.94013 1.03598 1.02084 1.21761 0.95598 0.81161 1.03835 1.48073 1.64567 1.15151 1.05731 1.19238 0.94710 0.92888 0.82670 1.21557 0.97036 1.31836 1.06600 0.95179 1.25799 0.96634 0.97182 0.98934 1.70044 1.17321 1.46623 1.24518 0.85760 0.80538 0.79045 0.77881 1.20374 1.19990 1.16328 1.21185 0.77159 0.86731 0.86284 1.90606 1.46860 1.20348 1.87671 1.21968 1.04569 0.93782 0.87500 1.61526 1.17227 1.44774 1.03046 1.22076 1.01727 0.95710 0.86665 1.21410 0.91414 1.00550 0.99376 1.21285 0.94950 0.83993 0.91048 1.86653 1.23724 1.32253 1.92470 1.21494 0.82964 0.84684 0.82553 1.43670 1.12923 1.39978 1.42953 1.90744 1.43527 1.46380 1.65155 1.22111 1.02490 0.99129 0.92841 1.21980 0.87844 0.97788 0.99023 0.91896 0.93681 0.88750 0.91092 0.88675 0.93691 0.96706 0.92329 0.90569 0.85223 0.92929 0.88492 0.89495 0.90479 0.75731 0.75190 0.75692 0.91778 0.88709 0.93569 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 10.24 71.99 0.74 -2.70 16 2 C 0.10 2.80 5.93 86.38 0.51 3.31 16 3 N -0.60 -24.14 2.46 -826.14 -2.03 -26.17 16 4 C 0.23 11.14 4.23 85.64 0.36 11.50 16 5 C -0.53 -31.24 9.94 25.60 0.25 -30.98 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.74 5.47 84.65 0.46 1.20 16 8 N -0.94 -59.61 13.96 21.45 0.30 -59.32 16 9 Si 0.94 44.88 27.47 68.60 1.88 46.77 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 13 C 0.50 19.96 7.35 87.66 0.64 20.60 16 14 O -0.58 -28.79 13.90 -3.01 -0.04 -28.83 16 15 C 0.05 1.44 4.00 85.56 0.34 1.79 16 16 N -0.54 -15.22 4.40 -900.94 -3.96 -19.18 16 17 C 0.07 1.37 5.32 86.32 0.46 1.83 16 18 C -0.09 -1.97 4.68 30.64 0.14 -1.82 16 19 C 0.13 2.62 0.93 -11.46 -0.01 2.61 16 20 O -0.54 -8.07 11.74 -148.98 -1.75 -9.82 16 21 C 0.50 10.32 7.01 87.66 0.61 10.93 16 22 N -0.83 -8.88 8.79 -173.53 -1.52 -10.40 16 23 O -0.58 -17.31 16.89 -3.03 -0.05 -17.37 16 24 C -0.13 -3.06 5.07 30.65 0.16 -2.90 16 25 C 0.06 1.81 4.97 86.33 0.43 2.24 16 26 H 0.06 1.23 7.22 -2.39 -0.02 1.22 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 30 H 0.10 2.13 6.44 -2.39 -0.02 2.12 16 31 H 0.05 2.05 7.13 -2.39 -0.02 2.03 16 32 H 0.01 0.79 6.85 -2.39 -0.02 0.77 16 33 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.08 1.86 7.38 -2.39 -0.02 1.84 16 35 H 0.13 2.74 7.03 -2.39 -0.02 2.72 16 36 H 0.05 1.03 7.76 -2.39 -0.02 1.01 16 37 H 0.10 1.67 8.02 -2.38 -0.02 1.65 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 2.03 7.79 -2.39 -0.02 2.01 16 40 H 0.39 2.37 7.58 -74.06 -0.56 1.81 16 41 H 0.42 1.47 7.33 -92.71 -0.68 0.79 16 42 H 0.41 3.65 8.93 -92.71 -0.83 2.82 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.22 7.76 -2.39 -0.02 1.20 16 46 H 0.06 2.37 5.78 -2.39 -0.01 2.35 16 Total: -1.00 -86.40 363.65 -3.17 -89.58 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -1.10 Total: 17.16 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 5.11 Total: 17.59 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -7.22 Total: -115.07 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -1.84 Total: -56.02 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -86.40 -3.17 -89.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434468641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.102 kcal (2) G-P(sol) polarization free energy of solvation -86.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds