Wall clock time and date at job start Fri Apr 10 2020 18:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46977 * 2 1 4 4 C 1.46500 * 120.00014 * 89.99718 * 3 2 1 5 5 C 1.50708 * 109.47112 * 90.00157 * 4 3 2 6 6 H 1.07996 * 119.99779 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00034 * 180.02562 * 5 4 3 8 8 N 1.31522 * 120.00107 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00152 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47041 * 59.99608 * 9 7 5 11 11 H 1.48494 * 109.47413 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47291 * 300.00119 * 9 7 5 13 13 C 1.34775 * 119.99887 * 269.99681 * 3 2 1 14 14 O 1.21281 * 119.99595 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00076 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47429 * 174.24278 * 15 13 3 17 17 C 1.47016 * 110.99727 * 293.95387 * 16 15 13 18 18 C 1.53102 * 109.25927 * 177.60564 * 17 16 15 19 19 O 1.43015 * 109.25658 * 56.84762 * 18 17 16 20 20 C 1.43015 * 113.73976 * 301.32805 * 19 18 17 21 21 C 1.47011 * 111.00287 * 170.31727 * 16 15 13 22 22 H 1.08999 * 109.50633 * 62.46017 * 21 16 15 23 23 C 1.52994 * 109.50751 * 302.32470 * 21 16 15 24 24 C 1.50697 * 109.47310 * 174.44788 * 23 21 16 25 25 N 1.34777 * 120.00494 * 173.81819 * 24 23 21 26 26 O 1.21288 * 119.99805 * 353.81357 * 24 23 21 27 27 H 1.09007 * 109.46997 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46972 * 60.00242 * 1 2 3 29 29 H 1.09002 * 109.47186 * 300.00199 * 1 2 3 30 30 H 1.09004 * 109.46972 * 119.99758 * 2 1 3 31 31 H 1.08996 * 109.47545 * 239.99555 * 2 1 3 32 32 H 1.08998 * 109.47459 * 209.99829 * 4 3 2 33 33 H 1.09001 * 109.47380 * 330.00319 * 4 3 2 34 34 H 0.96999 * 119.99592 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47209 * 294.24256 * 15 13 3 36 36 H 1.08994 * 109.47344 * 54.23836 * 15 13 3 37 37 H 1.09001 * 109.50784 * 297.54000 * 17 16 15 38 38 H 1.08999 * 109.51008 * 57.67116 * 17 16 15 39 39 H 1.08993 * 109.50356 * 176.78383 * 18 17 16 40 40 H 1.09004 * 109.50609 * 296.87010 * 18 17 16 41 41 H 1.08998 * 109.51097 * 178.60471 * 20 19 18 42 42 H 1.08997 * 109.50778 * 298.74327 * 20 19 18 43 43 H 1.08999 * 109.47020 * 294.44832 * 23 21 16 44 44 H 1.09004 * 109.47101 * 54.44738 * 23 21 16 45 45 H 0.97002 * 119.99342 * 0.02562 * 25 24 23 46 46 H 0.96996 * 120.00391 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2687 5 6 3.6858 1.8351 1.7038 6 1 4.3426 1.2303 1.0963 7 6 4.1490 2.3897 2.8780 8 7 3.3489 3.1258 3.6182 9 14 5.9130 2.0957 3.4177 10 1 6.8408 2.6190 2.3831 11 1 6.1604 2.7958 4.7036 12 1 6.1402 0.6389 3.5949 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1671 15 6 1.9914 1.3063 -2.4722 16 7 2.1767 2.2468 -3.5853 17 6 1.1539 3.3026 -3.5588 18 6 1.4193 4.2915 -4.6971 19 8 1.4366 3.5856 -5.9407 20 6 2.4216 2.5504 -6.0015 21 6 2.1664 1.5439 -4.8764 22 1 1.1961 1.0701 -5.0252 23 6 3.2635 0.4776 -4.8863 24 6 3.1652 -0.3326 -6.1532 25 7 4.1082 -1.2518 -6.4403 26 8 2.2373 -0.1576 -6.9144 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 2.0955 3.1410 1.1384 33 1 1.5816 1.6877 2.0284 34 1 3.6750 3.5163 4.4441 35 1 2.6921 0.4779 -2.5761 36 1 0.9711 0.9230 -2.4865 37 1 0.1674 2.8569 -3.6865 38 1 1.1964 3.8267 -2.6040 39 1 0.6310 5.0439 -4.7166 40 1 2.3823 4.7773 -4.5400 41 1 2.3582 2.0437 -6.9644 42 1 3.4141 2.9850 -5.8827 43 1 4.2397 0.9602 -4.8385 44 1 3.1401 -0.1787 -4.0248 45 1 4.8500 -1.3920 -5.8312 46 1 4.0447 -1.7735 -7.2555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473558026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:13 Heat of formation + Delta-G solvation = -106.148600 kcal Electronic energy + Delta-G solvation = -27634.162532 eV Core-core repulsion = 23752.246651 eV Total energy + Delta-G solvation = -3881.915880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51117 -39.34916 -38.53987 -35.80986 -35.16443 -33.96847 -32.84354 -32.51491 -30.14003 -29.52608 -28.05535 -26.92134 -24.80216 -23.43471 -23.03975 -22.28526 -20.92410 -19.97958 -18.40584 -17.68831 -17.37172 -16.60964 -16.39421 -16.26455 -16.10836 -15.42687 -15.33834 -14.93192 -14.78296 -14.41036 -14.31426 -13.87408 -13.54916 -13.40040 -13.32058 -13.16188 -12.67138 -12.41201 -12.13214 -12.02175 -11.76144 -11.53143 -11.25205 -11.22080 -11.07161 -10.94310 -10.75329 -10.56972 -10.45834 -10.18763 -10.14179 -9.98434 -9.66688 -9.61368 -8.88035 -8.44365 -8.25531 -7.66319 -6.05358 -4.10114 2.33809 3.10244 3.30005 3.35052 3.35672 3.42273 3.58905 3.92118 4.13420 4.43851 4.54197 4.58688 4.78210 4.94497 5.08807 5.18051 5.22866 5.28502 5.30747 5.31721 5.37085 5.45771 5.49427 5.58817 5.62165 5.73454 5.79710 5.86633 5.97467 6.03100 6.07135 6.19114 6.43374 6.44928 6.82654 6.95795 6.99831 7.10604 7.20916 7.43223 7.54073 7.91110 7.95299 8.22427 8.41495 8.89381 9.10774 9.55046 11.02671 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.003639 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.935752 B = 7692.380676 C = 8069.664507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.522 6.522 15 C 0.030 3.970 16 N -0.513 5.513 17 C 0.019 3.981 18 C 0.064 3.936 19 O -0.385 6.385 20 C 0.071 3.929 21 C 0.065 3.935 22 H 0.061 0.939 23 C -0.143 4.143 24 C 0.519 3.481 25 N -0.856 5.856 26 O -0.540 6.540 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.036 0.964 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.403 0.597 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -8.982 -16.780 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.101 4.101 16 N -0.238 5.238 17 C -0.109 4.109 18 C -0.013 4.013 19 O -0.303 6.303 20 C -0.006 4.006 21 C -0.045 4.045 22 H 0.079 0.921 23 C -0.184 4.184 24 C 0.304 3.696 25 N -0.420 5.420 26 O -0.417 6.417 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.073 0.927 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.232 0.768 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.027 -7.714 -17.036 18.811 hybrid contribution 0.796 -1.165 0.698 1.574 sum -1.231 -8.879 -16.338 18.636 Atomic orbital electron populations 1.22231 0.96871 1.01409 1.02280 1.21389 0.93449 0.84381 1.02488 1.48273 1.64021 1.13207 1.07704 1.19241 0.96201 0.93585 0.78038 1.21386 0.96925 1.31931 1.06203 0.92570 1.24928 0.97789 0.94938 0.96404 1.69924 1.35715 1.33404 1.14371 0.86569 0.84876 0.78184 0.77838 1.20188 1.21201 1.20309 1.20062 0.78960 0.87164 0.84592 1.90653 1.44600 1.17779 1.86772 1.22215 1.01237 0.95715 0.90957 1.61843 1.49316 1.12084 1.00576 1.22906 0.92061 0.93934 1.01987 1.22682 1.02428 0.93659 0.82549 1.87979 1.57685 1.49056 1.35618 1.22777 0.91831 0.87654 0.98371 1.22001 0.97890 0.94010 0.90557 0.92134 1.21778 1.02479 0.97969 0.96128 1.20642 0.81524 0.79744 0.87683 1.43892 1.28515 1.41816 1.27788 1.90760 1.32952 1.67246 1.50766 0.92185 0.93256 0.91937 0.89875 0.92102 0.93951 0.95122 0.92677 0.88243 0.92472 0.94557 0.87484 0.88537 0.91904 0.87591 0.92694 0.87485 0.87851 0.76828 0.76852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.18 37.16 0.38 -1.82 16 2 C 0.11 1.63 5.85 -4.04 -0.02 1.60 16 3 N -0.60 -12.09 2.46 -175.06 -0.43 -12.52 16 4 C 0.25 6.32 5.16 -5.19 -0.03 6.29 16 5 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 C 0.51 10.06 7.25 -10.99 -0.08 9.98 16 14 O -0.52 -12.60 14.20 5.56 0.08 -12.52 16 15 C 0.03 0.43 3.70 -4.98 -0.02 0.41 16 16 N -0.51 -7.52 4.24 -227.78 -0.97 -8.49 16 17 C 0.02 0.28 5.30 -3.71 -0.02 0.26 16 18 C 0.06 0.86 7.01 37.21 0.26 1.13 16 19 O -0.39 -5.60 10.83 -35.23 -0.38 -5.98 16 20 C 0.07 0.92 6.01 37.21 0.22 1.14 16 21 C 0.06 0.81 1.69 -67.60 -0.11 0.69 16 22 H 0.06 0.83 7.84 -51.93 -0.41 0.43 16 23 C -0.14 -1.35 5.06 -27.89 -0.14 -1.50 16 24 C 0.52 4.96 7.74 -10.99 -0.09 4.87 16 25 N -0.86 -4.85 8.87 31.22 0.28 -4.57 16 26 O -0.54 -7.28 15.10 5.55 0.08 -7.20 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.06 0.75 6.60 -51.93 -0.34 0.40 16 32 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 1.23 5.21 -51.93 -0.27 0.96 16 36 H 0.06 0.75 6.86 -51.93 -0.36 0.40 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.11 1.85 6.06 -51.93 -0.31 1.53 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.11 1.38 6.32 -51.93 -0.33 1.05 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.10 0.86 5.88 -51.93 -0.31 0.55 16 45 H 0.40 1.25 8.83 -40.82 -0.36 0.89 16 46 H 0.40 1.90 8.93 -40.82 -0.36 1.54 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -35.44 365.98 -7.32 -42.76 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.15 Total: 2.26 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.07 Total: 9.81 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.38 Total: -51.13 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.22 Total: -25.70 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.44 -7.32 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473558026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.390 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds