Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47018 * 2 1 4 4 C 1.46500 * 120.00221 * 270.00031 * 3 2 1 5 5 C 1.50696 * 109.47131 * 270.00079 * 4 3 2 6 6 H 1.08004 * 120.00338 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00123 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99996 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00164 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47090 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47108 * 120.00046 * 9 7 5 12 12 H 1.48499 * 109.47114 * 240.00051 * 9 7 5 13 13 C 1.34781 * 120.00077 * 90.00164 * 3 2 1 14 14 O 1.21274 * 120.00106 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99667 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.46980 * 174.51746 * 15 13 3 17 17 C 1.47015 * 111.00023 * 300.64812 * 16 15 13 18 18 C 1.53097 * 109.25644 * 182.34728 * 17 16 15 19 19 O 1.43012 * 109.29222 * 303.21911 * 18 17 16 20 20 C 1.43009 * 113.74222 * 58.64922 * 19 18 17 21 21 C 1.47018 * 110.99367 * 64.32826 * 16 15 13 22 22 H 1.09003 * 109.54476 * 297.56147 * 21 16 15 23 23 C 1.52994 * 109.50972 * 57.67339 * 21 16 15 24 24 C 1.50706 * 109.47243 * 185.60769 * 23 21 16 25 25 N 1.34776 * 120.00034 * 186.34388 * 24 23 21 26 26 O 1.21278 * 119.99942 * 6.34414 * 24 23 21 27 27 H 1.09003 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47087 * 299.99923 * 1 2 3 29 29 H 1.09005 * 109.47119 * 59.99970 * 1 2 3 30 30 H 1.08995 * 109.47087 * 240.00077 * 2 1 3 31 31 H 1.09005 * 109.47119 * 120.00030 * 2 1 3 32 32 H 1.08998 * 109.46751 * 29.99924 * 4 3 2 33 33 H 1.09002 * 109.47126 * 149.99772 * 4 3 2 34 34 H 0.97002 * 120.00238 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47126 * 54.52601 * 15 13 3 36 36 H 1.08997 * 109.47489 * 294.51761 * 15 13 3 37 37 H 1.09002 * 109.47449 * 62.43348 * 17 16 15 38 38 H 1.08998 * 109.54267 * 302.30326 * 17 16 15 39 39 H 1.09000 * 109.50862 * 183.25771 * 18 17 16 40 40 H 1.09002 * 109.50551 * 63.17442 * 18 17 16 41 41 H 1.09005 * 109.51195 * 61.26195 * 20 19 18 42 42 H 1.09001 * 109.51184 * 181.35115 * 20 19 18 43 43 H 1.08997 * 109.47144 * 305.60411 * 23 21 16 44 44 H 1.08994 * 109.47229 * 65.60534 * 23 21 16 45 45 H 0.96996 * 120.00049 * 359.97438 * 25 24 23 46 46 H 0.97002 * 119.99746 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3490 3.1258 -3.6180 9 14 5.9130 2.0957 -3.4175 10 1 6.6008 1.2406 -2.4169 11 1 5.9200 1.4165 -4.7381 12 1 6.6208 3.3966 -3.5262 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.4325 2.1570 3.5858 17 6 3.8644 2.4707 3.4737 18 6 4.2939 3.3076 4.6816 19 8 3.4848 4.4847 4.7527 20 6 2.0847 4.2151 4.8637 21 6 1.6325 3.3883 3.6570 22 1 1.7737 3.9682 2.7449 23 6 0.1533 3.0285 3.8097 24 6 -0.6784 4.2836 3.7444 25 7 -2.0035 4.2271 3.9837 26 8 -0.1552 5.3444 3.4765 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5816 1.6877 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 3.6749 3.5158 -4.4443 35 1 2.5472 0.3689 2.4889 36 1 0.9260 1.0989 2.5736 37 1 4.0423 3.0350 2.5582 38 1 4.4396 1.5452 3.4491 39 1 5.3408 3.5914 4.5741 40 1 4.1671 2.7232 5.5930 41 1 1.8930 3.6567 5.7799 42 1 1.5338 5.1553 4.8885 43 1 -0.1417 2.3550 3.0051 44 1 -0.0040 2.5380 4.7702 45 1 -2.4220 3.3786 4.1975 46 1 -2.5388 5.0350 3.9420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473558029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = -103.288240 kcal Electronic energy + Delta-G solvation = -28329.819936 eV Core-core repulsion = 24448.028091 eV Total energy + Delta-G solvation = -3881.791846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.57147 -39.28131 -38.31823 -35.81400 -34.93149 -33.76799 -32.82779 -32.39426 -30.16302 -29.48451 -27.90275 -26.85513 -24.62639 -23.31255 -23.07361 -22.29998 -20.74330 -19.94098 -18.34373 -17.52395 -17.08569 -16.67244 -16.35877 -16.30708 -16.07644 -15.28109 -15.02907 -14.90447 -14.60112 -14.43186 -14.31596 -13.95500 -13.48903 -13.34461 -13.11724 -12.88205 -12.69572 -12.19800 -12.00793 -11.80919 -11.74704 -11.60153 -11.23962 -11.11033 -10.90725 -10.76587 -10.65347 -10.53763 -10.33882 -10.15481 -9.95958 -9.78142 -9.71692 -9.60044 -9.36436 -8.45053 -7.79495 -7.68854 -6.05563 -4.10484 2.57764 3.27978 3.28796 3.33019 3.37107 3.40561 3.89221 3.95456 4.15634 4.43628 4.74258 4.81007 4.99002 5.01537 5.15200 5.26464 5.28109 5.30239 5.38480 5.44508 5.50838 5.55178 5.62413 5.64856 5.67818 5.73565 5.85540 5.95523 6.10008 6.16940 6.37446 6.40202 6.51877 6.65826 6.91510 7.04614 7.06670 7.18424 7.37743 7.43414 7.52211 7.90338 8.18353 8.21884 8.37533 8.87815 9.04352 9.54827 11.02606 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.004501 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.213464 B = 6220.020584 C = 6949.502662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.245 3.755 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.471 3.529 14 O -0.531 6.531 15 C 0.025 3.975 16 N -0.510 5.510 17 C -0.001 4.001 18 C 0.068 3.932 19 O -0.379 6.379 20 C 0.075 3.925 21 C 0.041 3.959 22 H 0.106 0.894 23 C -0.137 4.137 24 C 0.516 3.484 25 N -0.860 5.860 26 O -0.529 6.529 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.400 0.600 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 -7.238 17.377 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.326 5.326 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.256 3.744 14 O -0.409 6.409 15 C -0.106 4.106 16 N -0.234 5.234 17 C -0.129 4.129 18 C -0.009 4.009 19 O -0.298 6.298 20 C -0.003 4.003 21 C -0.067 4.067 22 H 0.123 0.877 23 C -0.177 4.177 24 C 0.300 3.700 25 N -0.424 5.424 26 O -0.405 6.405 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.228 0.772 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.152 -6.002 17.443 20.592 hybrid contribution 0.376 -0.378 -1.235 1.345 sum -8.776 -6.380 16.208 19.504 Atomic orbital electron populations 1.22212 0.96824 1.01439 1.02148 1.21433 0.93474 0.84310 1.02756 1.48419 1.63089 1.13129 1.08002 1.19265 0.96277 0.93637 0.78258 1.21432 0.96853 1.31890 1.06208 0.92529 1.24935 0.97825 0.94889 0.96426 1.69940 1.35620 1.33425 1.14310 0.86455 0.84668 0.78079 0.78287 1.19829 1.20970 1.20851 1.21551 0.79124 0.87534 0.86173 1.90621 1.45683 1.17981 1.86656 1.22443 1.02696 0.97591 0.87890 1.62711 1.04013 1.16821 1.39834 1.23053 0.88120 1.00794 1.00947 1.22606 0.95113 0.86620 0.96608 1.88013 1.17038 1.30342 1.94359 1.22732 0.82144 1.00190 0.95190 1.22333 0.90092 0.91814 1.02496 0.87684 1.21698 0.95335 0.96024 1.04667 1.20646 0.82631 0.91146 0.75554 1.43880 1.09331 1.14059 1.75098 1.90795 1.71683 1.31482 1.46514 0.92051 0.93331 0.92059 0.89920 0.91657 0.95190 0.93995 0.92764 0.88194 0.88291 0.89573 0.90317 0.88777 0.93117 0.93634 0.87855 0.88473 0.88387 0.77231 0.76937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.10 1.57 5.95 -4.04 -0.02 1.54 16 3 N -0.59 -12.06 2.46 -175.06 -0.43 -12.49 16 4 C 0.25 6.36 5.16 -5.20 -0.03 6.34 16 5 C -0.52 -14.84 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.47 9.32 7.05 -10.98 -0.08 9.24 16 14 O -0.53 -12.98 11.17 5.56 0.06 -12.92 16 15 C 0.03 0.36 4.27 -4.97 -0.02 0.34 16 16 N -0.51 -7.41 4.74 -227.77 -1.08 -8.49 16 17 C 0.00 -0.02 5.26 -3.71 -0.02 -0.04 16 18 C 0.07 0.96 7.01 37.21 0.26 1.22 16 19 O -0.38 -6.47 10.83 -35.23 -0.38 -6.85 16 20 C 0.07 1.12 6.01 37.21 0.22 1.35 16 21 C 0.04 0.64 1.35 -67.60 -0.09 0.55 16 22 H 0.11 2.20 5.29 -51.93 -0.27 1.92 16 23 C -0.14 -1.55 5.04 -27.88 -0.14 -1.70 16 24 C 0.52 6.46 7.74 -10.98 -0.08 6.38 16 25 N -0.86 -6.63 8.87 31.22 0.28 -6.35 16 26 O -0.53 -9.32 15.11 5.56 0.08 -9.23 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.54 7.39 -51.93 -0.38 0.15 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.07 0.79 6.29 -51.93 -0.33 0.46 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.10 1.24 7.10 -51.93 -0.37 0.88 16 36 H 0.10 1.13 5.16 -51.93 -0.27 0.86 16 37 H 0.09 1.76 5.56 -51.93 -0.29 1.47 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 1.65 6.34 -51.93 -0.33 1.32 16 43 H 0.10 1.04 5.98 -51.93 -0.31 0.72 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.40 1.71 8.83 -40.82 -0.36 1.35 16 46 H 0.40 2.79 8.93 -40.82 -0.36 2.43 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -36.93 360.78 -7.36 -44.30 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.00 Total: 5.66 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.04 Total: 10.05 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.50 Total: -53.43 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.24 Total: -29.00 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.93 -7.36 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473558029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.993 kcal (2) G-P(sol) polarization free energy of solvation -36.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds