Wall clock time and date at job start Fri Apr 10 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47018 * 2 1 4 4 C 1.46500 * 120.00221 * 270.00031 * 3 2 1 5 5 C 1.50696 * 109.47131 * 270.00079 * 4 3 2 6 6 H 1.08004 * 120.00338 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00123 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99996 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00164 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47090 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47108 * 120.00046 * 9 7 5 12 12 H 1.48499 * 109.47114 * 240.00051 * 9 7 5 13 13 C 1.34781 * 120.00077 * 90.00164 * 3 2 1 14 14 O 1.21274 * 120.00106 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99667 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.46980 * 174.51746 * 15 13 3 17 17 C 1.47015 * 111.00023 * 300.64812 * 16 15 13 18 18 C 1.53097 * 109.25644 * 182.34728 * 17 16 15 19 19 O 1.43012 * 109.29222 * 303.21911 * 18 17 16 20 20 C 1.43009 * 113.74222 * 58.64922 * 19 18 17 21 21 C 1.47018 * 110.99367 * 64.32826 * 16 15 13 22 22 H 1.09003 * 109.54476 * 297.56147 * 21 16 15 23 23 C 1.52994 * 109.50972 * 57.67339 * 21 16 15 24 24 C 1.50706 * 109.47243 * 185.60769 * 23 21 16 25 25 N 1.34776 * 120.00034 * 186.34388 * 24 23 21 26 26 O 1.21278 * 119.99942 * 6.34414 * 24 23 21 27 27 H 1.09003 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47087 * 299.99923 * 1 2 3 29 29 H 1.09005 * 109.47119 * 59.99970 * 1 2 3 30 30 H 1.08995 * 109.47087 * 240.00077 * 2 1 3 31 31 H 1.09005 * 109.47119 * 120.00030 * 2 1 3 32 32 H 1.08998 * 109.46751 * 29.99924 * 4 3 2 33 33 H 1.09002 * 109.47126 * 149.99772 * 4 3 2 34 34 H 0.97002 * 120.00238 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47126 * 54.52601 * 15 13 3 36 36 H 1.08997 * 109.47489 * 294.51761 * 15 13 3 37 37 H 1.09002 * 109.47449 * 62.43348 * 17 16 15 38 38 H 1.08998 * 109.54267 * 302.30326 * 17 16 15 39 39 H 1.09000 * 109.50862 * 183.25771 * 18 17 16 40 40 H 1.09002 * 109.50551 * 63.17442 * 18 17 16 41 41 H 1.09005 * 109.51195 * 61.26195 * 20 19 18 42 42 H 1.09001 * 109.51184 * 181.35115 * 20 19 18 43 43 H 1.08997 * 109.47144 * 305.60411 * 23 21 16 44 44 H 1.08994 * 109.47229 * 65.60534 * 23 21 16 45 45 H 0.96996 * 120.00049 * 359.97438 * 25 24 23 46 46 H 0.97002 * 119.99746 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3490 3.1258 -3.6180 9 14 5.9130 2.0957 -3.4175 10 1 6.6008 1.2406 -2.4169 11 1 5.9200 1.4165 -4.7381 12 1 6.6208 3.3966 -3.5262 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.4325 2.1570 3.5858 17 6 3.8644 2.4707 3.4737 18 6 4.2939 3.3076 4.6816 19 8 3.4848 4.4847 4.7527 20 6 2.0847 4.2151 4.8637 21 6 1.6325 3.3883 3.6570 22 1 1.7737 3.9682 2.7449 23 6 0.1533 3.0285 3.8097 24 6 -0.6784 4.2836 3.7444 25 7 -2.0035 4.2271 3.9837 26 8 -0.1552 5.3444 3.4765 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5816 1.6877 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 3.6749 3.5158 -4.4443 35 1 2.5472 0.3689 2.4889 36 1 0.9260 1.0989 2.5736 37 1 4.0423 3.0350 2.5582 38 1 4.4396 1.5452 3.4491 39 1 5.3408 3.5914 4.5741 40 1 4.1671 2.7232 5.5930 41 1 1.8930 3.6567 5.7799 42 1 1.5338 5.1553 4.8885 43 1 -0.1417 2.3550 3.0051 44 1 -0.0040 2.5380 4.7702 45 1 -2.4220 3.3786 4.1975 46 1 -2.5388 5.0350 3.9420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473558029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:16 Heat of formation + Delta-G solvation = -136.151863 kcal Electronic energy + Delta-G solvation = -28331.245010 eV Core-core repulsion = 24448.028091 eV Total energy + Delta-G solvation = -3883.216919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.82401 -40.48410 -39.60469 -37.25467 -36.33622 -34.93271 -34.66787 -33.49993 -31.65057 -30.76906 -29.19400 -28.42760 -26.11215 -24.62151 -24.43814 -23.79771 -21.77955 -21.13081 -19.80153 -18.66899 -18.42985 -18.08729 -17.93217 -17.49964 -17.29527 -16.88504 -16.26852 -16.10318 -16.01047 -15.86583 -15.65788 -15.25561 -14.70599 -14.66922 -14.51152 -14.16886 -13.95111 -13.75089 -13.40679 -13.23492 -13.08297 -12.93905 -12.74051 -12.67704 -12.50803 -12.24123 -12.16201 -11.92317 -11.80579 -11.65017 -11.45341 -11.20278 -11.01750 -10.69113 -10.64085 -10.55286 -9.40843 -9.19340 -8.25813 -6.41101 1.31818 1.35110 1.46325 1.63326 1.81187 2.29074 2.40799 2.45554 2.84454 3.03718 3.07552 3.72112 3.76362 3.76820 3.98670 4.12062 4.18074 4.24480 4.33024 4.39864 4.43910 4.49418 4.52349 4.61826 4.64768 4.69854 4.75815 4.90166 4.98362 5.00238 5.05632 5.07938 5.18333 5.28720 5.40462 5.56429 5.76318 5.82803 5.86076 5.91989 6.03663 6.23740 6.49150 6.67624 6.81991 7.26090 7.38728 7.51341 8.81314 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.004501 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.213464 B = 6220.020584 C = 6949.502662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.096 3.904 3 N -0.602 5.602 4 C 0.264 3.736 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.267 1.267 12 H -0.285 1.285 13 C 0.460 3.540 14 O -0.587 6.587 15 C 0.036 3.964 16 N -0.486 5.486 17 C -0.003 4.003 18 C 0.067 3.933 19 O -0.413 6.413 20 C 0.075 3.925 21 C 0.042 3.958 22 H 0.043 0.957 23 C -0.129 4.129 24 C 0.510 3.490 25 N -0.833 5.833 26 O -0.593 6.593 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.018 0.982 33 H -0.014 1.014 34 H 0.266 0.734 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.031 0.969 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.144 0.856 45 H 0.421 0.579 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 -10.914 19.949 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.026 4.026 3 N -0.333 5.333 4 C 0.142 3.858 5 C -0.576 4.576 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.192 1.192 12 H -0.211 1.211 13 C 0.248 3.752 14 O -0.468 6.468 15 C -0.095 4.095 16 N -0.209 5.209 17 C -0.131 4.131 18 C -0.009 4.009 19 O -0.332 6.332 20 C -0.001 4.001 21 C -0.067 4.067 22 H 0.061 0.939 23 C -0.169 4.169 24 C 0.295 3.705 25 N -0.398 5.398 26 O -0.474 6.474 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.036 0.964 33 H 0.004 0.996 34 H 0.075 0.925 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.050 0.950 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.127 0.873 44 H 0.161 0.839 45 H 0.253 0.747 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -9.934 -9.767 20.052 24.416 hybrid contribution 0.535 0.794 -2.024 2.239 sum -9.399 -8.973 18.028 22.223 Atomic orbital electron populations 1.22159 0.94397 1.03680 1.01609 1.21803 0.95479 0.81176 1.04095 1.48455 1.63522 1.15134 1.06205 1.18607 0.95200 0.91081 0.80950 1.21722 0.97840 1.31754 1.06326 0.92793 1.25892 1.02430 0.94479 0.96551 1.70069 1.37810 1.34393 1.14840 0.85368 0.78960 0.77924 0.78561 1.18803 1.19219 1.21135 1.22744 0.77689 0.87077 0.87711 1.90645 1.47798 1.20800 1.87574 1.22680 1.05582 0.97495 0.83728 1.62830 1.03155 1.16021 1.38880 1.23024 0.89477 1.01292 0.99282 1.22763 0.95094 0.85947 0.97100 1.87963 1.18325 1.32339 1.94572 1.22762 0.81103 0.99885 0.96389 1.22174 0.93073 0.91576 0.99921 0.93890 1.21689 0.92020 0.95683 1.07464 1.20956 0.83944 0.90696 0.74905 1.43654 1.07761 1.15527 1.72834 1.90787 1.73156 1.33717 1.49693 0.88287 0.91578 0.94966 0.91411 0.87451 0.96431 0.99571 0.92505 0.85072 0.84414 0.95025 0.88034 0.88098 0.89902 0.90163 0.89681 0.87257 0.83855 0.74737 0.76293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 10.24 71.98 0.74 -2.72 16 2 C 0.10 2.69 5.95 86.38 0.51 3.21 16 3 N -0.60 -24.80 2.46 -826.17 -2.03 -26.83 16 4 C 0.26 14.55 5.16 85.63 0.44 14.99 16 5 C -0.54 -31.59 9.39 25.60 0.24 -31.35 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 9 Si 0.97 46.04 29.54 68.60 2.03 48.06 16 10 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 13 C 0.46 18.43 7.05 87.66 0.62 19.05 16 14 O -0.59 -30.73 11.17 -3.01 -0.03 -30.77 16 15 C 0.04 0.91 4.27 85.56 0.37 1.27 16 16 N -0.49 -13.01 4.74 -874.52 -4.15 -17.16 16 17 C 0.00 -0.08 5.26 86.31 0.45 0.38 16 18 C 0.07 1.84 7.01 72.01 0.50 2.35 16 19 O -0.41 -14.29 10.83 -148.98 -1.61 -15.90 16 20 C 0.08 2.24 6.01 72.02 0.43 2.67 16 21 C 0.04 1.28 1.35 44.93 0.06 1.34 16 22 H 0.04 1.92 5.29 -2.39 -0.01 1.91 16 23 C -0.13 -2.57 5.04 29.85 0.15 -2.42 16 24 C 0.51 12.32 7.74 87.66 0.68 13.00 16 25 N -0.83 -10.98 8.87 -173.53 -1.54 -12.52 16 26 O -0.59 -21.91 15.11 -3.02 -0.05 -21.96 16 27 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.19 7.39 -2.39 -0.02 1.18 16 29 H 0.03 0.87 8.14 -2.38 -0.02 0.86 16 30 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 31 H 0.11 2.10 6.29 -2.38 -0.02 2.08 16 32 H 0.02 0.99 8.07 -2.39 -0.02 0.98 16 33 H -0.01 -0.91 7.42 -2.39 -0.02 -0.92 16 34 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.13 2.57 7.10 -2.39 -0.02 2.55 16 36 H 0.14 2.42 5.16 -2.39 -0.01 2.41 16 37 H 0.03 1.36 5.56 -2.39 -0.01 1.35 16 38 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 1.79 8.14 -2.38 -0.02 1.78 16 42 H 0.09 2.83 6.34 -2.39 -0.02 2.81 16 43 H 0.11 1.91 5.98 -2.39 -0.01 1.90 16 44 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.42 2.01 8.83 -92.71 -0.82 1.19 16 46 H 0.41 5.02 8.93 -92.71 -0.83 4.19 16 Total: -1.00 -91.88 360.78 -2.07 -93.95 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.63 Total: 18.53 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 5.66 Total: 22.51 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -7.43 Total: -114.42 kcal Atomic # 8 Polarization: -66.93 SS G_CDS: -1.69 Total: -68.62 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -91.88 -2.07 -93.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473558029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.201 kcal (2) G-P(sol) polarization free energy of solvation -91.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds