Wall clock time and date at job start Fri Apr 10 2020 18:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46907 * 109.47105 * 2 1 4 4 C 1.47012 * 110.99816 * 46.36205 * 3 2 1 5 5 C 1.53099 * 109.25591 * 182.39025 * 4 3 2 6 6 O 1.43015 * 109.26112 * 303.15827 * 5 4 3 7 7 C 1.43012 * 113.74244 * 58.66590 * 6 5 4 8 8 H 1.08998 * 109.54013 * 61.28693 * 7 6 5 9 9 C 1.50697 * 109.50961 * 181.39711 * 7 6 5 10 10 O 1.21280 * 119.99802 * 4.78403 * 9 7 6 11 11 N 1.34773 * 120.00124 * 184.78297 * 9 7 6 12 12 C 1.46500 * 120.00027 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47232 * 180.02562 * 12 11 9 14 14 O 1.42902 * 113.27579 * 313.06273 * 13 12 11 15 15 C 1.53492 * 114.20711 * 180.02562 * 13 12 11 16 16 N 1.47064 * 87.98473 * 220.14246 * 15 13 12 17 17 C 1.36932 * 136.05908 * 207.07584 * 16 15 13 18 18 H 1.08001 * 119.99827 * 7.83717 * 17 16 15 19 19 C 1.38814 * 120.00431 * 187.82899 * 17 16 15 20 20 N 1.31616 * 120.00175 * 195.17932 * 19 17 16 21 21 Si 1.86806 * 119.99385 * 15.17320 * 19 17 16 22 22 H 1.48498 * 109.47209 * 269.99718 * 21 19 17 23 23 H 1.48504 * 109.46570 * 150.00045 * 21 19 17 24 24 H 1.48495 * 109.47319 * 30.00294 * 21 19 17 25 25 C 1.47071 * 87.88256 * 27.34384 * 16 15 13 26 26 C 1.47010 * 111.00139 * 170.00133 * 3 2 1 27 27 H 1.08998 * 109.47025 * 300.00372 * 1 2 3 28 28 H 1.08995 * 109.46763 * 59.99950 * 1 2 3 29 29 H 1.08996 * 109.47025 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47450 * 239.99956 * 2 1 3 31 31 H 1.08994 * 109.47193 * 119.99732 * 2 1 3 32 32 H 1.09002 * 109.51032 * 302.32667 * 4 3 2 33 33 H 1.09002 * 109.50345 * 62.41895 * 4 3 2 34 34 H 1.09008 * 109.50306 * 63.09128 * 5 4 3 35 35 H 1.08997 * 109.50938 * 183.22095 * 5 4 3 36 36 H 0.97003 * 119.99846 * 0.02562 * 11 9 7 37 37 H 1.08993 * 109.47143 * 59.99916 * 12 11 9 38 38 H 1.09008 * 109.46839 * 299.99890 * 12 11 9 39 39 H 0.96702 * 114.00431 * 46.94074 * 14 13 12 40 40 H 1.08994 * 113.46766 * 105.36356 * 15 13 12 41 41 H 1.09003 * 113.52103 * 334.93070 * 15 13 12 42 42 H 0.96991 * 120.00289 * 354.90059 * 20 19 17 43 43 H 1.08993 * 113.47033 * 87.43798 * 25 16 15 44 44 H 1.09001 * 113.46589 * 217.87539 * 25 16 15 45 45 H 1.08995 * 109.50999 * 57.66781 * 26 3 2 46 46 H 1.09000 * 109.50352 * 297.54157 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3023 2.1974 0.9933 5 6 1.8009 3.6430 0.9183 6 8 3.2164 3.6650 1.1212 7 6 3.9465 2.8845 0.1709 8 1 3.7759 3.2773 -0.8314 9 6 5.4174 2.9469 0.4923 10 8 5.7962 3.5230 1.4900 11 7 6.3121 2.3625 -0.3290 12 6 7.7420 2.4227 -0.0162 13 6 8.5327 1.6878 -1.1005 14 8 7.9856 0.4093 -1.4297 15 6 10.0514 1.6837 -0.8784 16 7 10.2112 1.8996 -2.3243 17 6 11.1673 1.6186 -3.2635 18 1 12.0150 1.0021 -3.0034 19 6 11.0469 2.1261 -4.5499 20 7 11.7799 1.6304 -5.5242 21 14 9.8444 3.5126 -4.8982 22 1 8.5240 2.9417 -5.2669 23 1 10.3558 4.3414 -6.0193 24 1 9.6975 4.3568 -3.6854 25 6 8.8952 2.5561 -2.3165 26 6 3.4696 1.4313 0.2383 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.2332 2.1697 0.7826 33 1 1.4872 1.7993 1.9910 34 1 1.5672 4.0582 -0.0621 35 1 1.3132 4.2368 1.6914 36 1 6.0091 1.9020 -1.1272 37 1 7.9230 1.9503 0.9492 38 1 8.0618 3.4641 0.0232 39 1 7.0287 0.4149 -1.5688 40 1 10.4377 0.7231 -0.5377 41 1 10.4048 2.5186 -0.2732 42 1 12.4562 0.9626 -5.3308 43 1 8.9428 3.6213 -2.0904 44 1 8.2964 2.3387 -3.2009 45 1 3.9826 0.8442 -0.5234 46 1 3.6897 1.0214 1.2240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484311457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:24 Heat of formation + Delta-G solvation = -43.800999 kcal Electronic energy + Delta-G solvation = -27048.089832 eV Core-core repulsion = 23168.877546 eV Total energy + Delta-G solvation = -3879.212285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73965 -39.68334 -38.68258 -36.58712 -35.31618 -34.24430 -32.41838 -32.11964 -31.16626 -29.15370 -27.53639 -25.76718 -25.48319 -24.73130 -23.06002 -21.49001 -20.88286 -20.62645 -19.67001 -18.26093 -17.49052 -17.07165 -16.70417 -16.28195 -15.93884 -15.74115 -15.57985 -15.24337 -14.87102 -14.63962 -14.50291 -14.08810 -13.86991 -13.73610 -13.34054 -13.23169 -13.09172 -12.72577 -12.65487 -12.36548 -12.17240 -12.06554 -11.79393 -11.62856 -11.39480 -11.17259 -10.98285 -10.53966 -10.32045 -10.12312 -10.09846 -9.85225 -9.40576 -9.24583 -9.06982 -8.89966 -8.71815 -7.21361 -6.31777 -3.23051 2.36848 2.54959 3.25133 3.36977 3.44957 3.59687 3.67815 4.20560 4.29451 4.39330 4.46087 4.52075 4.57698 4.61244 4.63589 4.71861 4.77592 4.83487 4.94890 4.99046 5.03252 5.06878 5.22850 5.28005 5.41074 5.43108 5.44833 5.50336 5.54277 5.67563 5.78593 6.01573 6.09790 6.16295 6.26228 6.32894 6.39442 6.43761 6.52427 6.65572 7.07548 7.22293 7.81588 8.01222 8.23183 8.96343 9.48902 10.33241 11.18608 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.003004 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.759753 B = 9317.334519 C = 9593.891887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.009 3.991 5 C 0.062 3.938 6 O -0.356 6.356 7 C 0.078 3.922 8 H 0.096 0.904 9 C 0.522 3.478 10 O -0.515 6.515 11 N -0.724 5.724 12 C 0.107 3.893 13 C 0.072 3.928 14 O -0.517 6.517 15 C 0.135 3.865 16 N -0.613 5.613 17 C -0.301 4.301 18 H 0.083 0.917 19 C -0.024 4.024 20 N -0.932 5.932 21 Si 1.063 2.937 22 H -0.294 1.294 23 H -0.294 1.294 24 H -0.283 1.283 25 C 0.080 3.920 26 C 0.029 3.971 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.398 0.602 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.361 0.639 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.262 0.738 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.094 0.906 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.159 -0.370 12.987 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.119 4.119 5 C -0.015 4.015 6 O -0.273 6.273 7 C 0.016 3.984 8 H 0.113 0.887 9 C 0.306 3.694 10 O -0.388 6.388 11 N -0.380 5.380 12 C -0.017 4.017 13 C 0.029 3.971 14 O -0.321 6.321 15 C 0.008 3.992 16 N -0.340 5.340 17 C -0.427 4.427 18 H 0.101 0.899 19 C -0.223 4.223 20 N -0.574 5.574 21 Si 0.895 3.105 22 H -0.222 1.222 23 H -0.222 1.222 24 H -0.209 1.209 25 C -0.047 4.047 26 C -0.100 4.100 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.233 0.767 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.207 0.793 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.644 1.044 12.067 27.460 hybrid contribution -0.013 -1.457 1.319 1.965 sum -24.657 -0.414 13.386 28.059 Atomic orbital electron populations 1.21933 0.94665 1.02268 1.02543 1.22146 0.96027 0.88245 1.01417 1.62311 1.03092 1.11750 1.48916 1.22956 1.00021 0.94652 0.94288 1.22779 0.80872 0.95301 1.02562 1.88129 1.17705 1.69041 1.52446 1.21929 0.89832 0.91925 0.94685 0.88674 1.19999 0.86956 0.78973 0.83446 1.90742 1.80397 1.41486 1.26225 1.45860 1.07247 1.57453 1.27400 1.21984 0.78419 1.02081 0.99225 1.23276 0.95220 0.84510 0.94084 1.86700 1.24993 1.28181 1.92204 1.22367 0.88399 0.99822 0.88630 1.45901 1.17855 1.67444 1.02838 1.20106 1.03375 1.28738 0.90521 0.89950 1.25769 1.03324 1.02400 0.90827 1.70886 1.24106 1.31243 1.31130 0.83763 0.74968 0.76575 0.75206 1.22209 1.22174 1.20897 1.23422 0.89006 0.95886 0.96338 1.22675 0.89377 0.95952 1.01989 0.92380 0.91551 0.91852 0.90004 0.94523 0.88688 0.93686 0.91871 0.87808 0.76722 0.90342 0.89765 0.79278 0.92449 0.92875 0.92796 0.92804 0.92548 0.88793 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.18 37.16 0.34 -0.44 16 2 C 0.05 0.31 6.00 -3.82 -0.02 0.29 16 3 N -0.53 -4.05 4.88 -234.31 -1.14 -5.19 16 4 C 0.01 0.06 4.94 -3.71 -0.02 0.04 16 5 C 0.06 0.48 7.01 37.21 0.26 0.74 16 6 O -0.36 -4.19 10.01 -55.06 -0.55 -4.74 16 7 C 0.08 0.79 3.22 -27.84 -0.09 0.70 16 8 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 9 C 0.52 6.64 7.18 -10.99 -0.08 6.57 16 10 O -0.51 -8.80 16.51 -14.28 -0.24 -9.04 16 11 N -0.72 -8.02 5.30 -60.29 -0.32 -8.34 16 12 C 0.11 1.44 5.43 -4.04 -0.02 1.41 16 13 C 0.07 1.19 1.73 -89.97 -0.16 1.03 16 14 O -0.52 -8.41 13.56 -35.23 -0.48 -8.88 16 15 C 0.13 2.64 8.10 -8.52 -0.07 2.57 16 16 N -0.61 -15.10 3.62 -184.61 -0.67 -15.77 16 17 C -0.30 -8.77 11.03 -15.06 -0.17 -8.94 16 18 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 19 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 20 N -0.93 -29.59 13.70 55.49 0.76 -28.83 16 21 Si 1.06 26.48 25.50 -169.99 -4.34 22.15 16 22 H -0.29 -6.96 6.97 56.52 0.39 -6.57 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.28 -6.49 5.66 56.52 0.32 -6.17 16 25 C 0.08 1.61 5.05 -8.38 -0.04 1.57 16 26 C 0.03 0.24 4.86 -3.72 -0.02 0.22 16 27 H 0.06 0.27 6.28 -51.93 -0.33 -0.06 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.09 0.50 6.05 -51.93 -0.31 0.18 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.40 3.36 6.81 -40.82 -0.28 3.08 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.18 7.90 -51.92 -0.41 0.77 16 39 H 0.36 3.98 7.21 45.56 0.33 4.31 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 42 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 43 H 0.05 1.06 6.82 -51.93 -0.35 0.71 16 44 H 0.06 1.18 6.22 -51.93 -0.32 0.85 16 45 H 0.09 0.61 8.01 -51.93 -0.42 0.20 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -37.31 361.73 -8.52 -45.83 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.83 Total: 2.40 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -0.18 Total: 4.96 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -1.37 Total: -58.13 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.26 Total: -22.66 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -4.34 Total: 22.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.31 -8.52 -45.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484311457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.031 kcal (2) G-P(sol) polarization free energy of solvation -37.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds