Wall clock time and date at job start Fri Apr 10 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46907 * 109.47105 * 2 1 4 4 C 1.47012 * 110.99816 * 46.36205 * 3 2 1 5 5 C 1.53099 * 109.25591 * 182.39025 * 4 3 2 6 6 O 1.43015 * 109.26112 * 303.15827 * 5 4 3 7 7 C 1.43012 * 113.74244 * 58.66590 * 6 5 4 8 8 H 1.08998 * 109.54013 * 61.28693 * 7 6 5 9 9 C 1.50697 * 109.50961 * 181.39711 * 7 6 5 10 10 O 1.21280 * 119.99802 * 4.78403 * 9 7 6 11 11 N 1.34773 * 120.00124 * 184.78297 * 9 7 6 12 12 C 1.46500 * 120.00027 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47232 * 180.02562 * 12 11 9 14 14 O 1.42902 * 113.27579 * 313.06273 * 13 12 11 15 15 C 1.53492 * 114.20711 * 180.02562 * 13 12 11 16 16 N 1.47064 * 87.98473 * 220.14246 * 15 13 12 17 17 C 1.36932 * 136.05908 * 207.07584 * 16 15 13 18 18 H 1.08001 * 119.99827 * 7.83717 * 17 16 15 19 19 C 1.38814 * 120.00431 * 187.82899 * 17 16 15 20 20 N 1.31616 * 120.00175 * 195.17932 * 19 17 16 21 21 Si 1.86806 * 119.99385 * 15.17320 * 19 17 16 22 22 H 1.48498 * 109.47209 * 269.99718 * 21 19 17 23 23 H 1.48504 * 109.46570 * 150.00045 * 21 19 17 24 24 H 1.48495 * 109.47319 * 30.00294 * 21 19 17 25 25 C 1.47071 * 87.88256 * 27.34384 * 16 15 13 26 26 C 1.47010 * 111.00139 * 170.00133 * 3 2 1 27 27 H 1.08998 * 109.47025 * 300.00372 * 1 2 3 28 28 H 1.08995 * 109.46763 * 59.99950 * 1 2 3 29 29 H 1.08996 * 109.47025 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47450 * 239.99956 * 2 1 3 31 31 H 1.08994 * 109.47193 * 119.99732 * 2 1 3 32 32 H 1.09002 * 109.51032 * 302.32667 * 4 3 2 33 33 H 1.09002 * 109.50345 * 62.41895 * 4 3 2 34 34 H 1.09008 * 109.50306 * 63.09128 * 5 4 3 35 35 H 1.08997 * 109.50938 * 183.22095 * 5 4 3 36 36 H 0.97003 * 119.99846 * 0.02562 * 11 9 7 37 37 H 1.08993 * 109.47143 * 59.99916 * 12 11 9 38 38 H 1.09008 * 109.46839 * 299.99890 * 12 11 9 39 39 H 0.96702 * 114.00431 * 46.94074 * 14 13 12 40 40 H 1.08994 * 113.46766 * 105.36356 * 15 13 12 41 41 H 1.09003 * 113.52103 * 334.93070 * 15 13 12 42 42 H 0.96991 * 120.00289 * 354.90059 * 20 19 17 43 43 H 1.08993 * 113.47033 * 87.43798 * 25 16 15 44 44 H 1.09001 * 113.46589 * 217.87539 * 25 16 15 45 45 H 1.08995 * 109.50999 * 57.66781 * 26 3 2 46 46 H 1.09000 * 109.50352 * 297.54157 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3023 2.1974 0.9933 5 6 1.8009 3.6430 0.9183 6 8 3.2164 3.6650 1.1212 7 6 3.9465 2.8845 0.1709 8 1 3.7759 3.2773 -0.8314 9 6 5.4174 2.9469 0.4923 10 8 5.7962 3.5230 1.4900 11 7 6.3121 2.3625 -0.3290 12 6 7.7420 2.4227 -0.0162 13 6 8.5327 1.6878 -1.1005 14 8 7.9856 0.4093 -1.4297 15 6 10.0514 1.6837 -0.8784 16 7 10.2112 1.8996 -2.3243 17 6 11.1673 1.6186 -3.2635 18 1 12.0150 1.0021 -3.0034 19 6 11.0469 2.1261 -4.5499 20 7 11.7799 1.6304 -5.5242 21 14 9.8444 3.5126 -4.8982 22 1 8.5240 2.9417 -5.2669 23 1 10.3558 4.3414 -6.0193 24 1 9.6975 4.3568 -3.6854 25 6 8.8952 2.5561 -2.3165 26 6 3.4696 1.4313 0.2383 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.2332 2.1697 0.7826 33 1 1.4872 1.7993 1.9910 34 1 1.5672 4.0582 -0.0621 35 1 1.3132 4.2368 1.6914 36 1 6.0091 1.9020 -1.1272 37 1 7.9230 1.9503 0.9492 38 1 8.0618 3.4641 0.0232 39 1 7.0287 0.4149 -1.5688 40 1 10.4377 0.7231 -0.5377 41 1 10.4048 2.5186 -0.2732 42 1 12.4562 0.9626 -5.3308 43 1 8.9428 3.6213 -2.0904 44 1 8.2964 2.3387 -3.2009 45 1 3.9826 0.8442 -0.5234 46 1 3.6897 1.0214 1.2240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484311457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:23 Heat of formation + Delta-G solvation = -76.788008 kcal Electronic energy + Delta-G solvation = -27049.520256 eV Core-core repulsion = 23168.877546 eV Total energy + Delta-G solvation = -3880.642710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66198 -40.89456 -39.71159 -37.24560 -36.75446 -35.37627 -34.43366 -32.94954 -31.67345 -30.59557 -28.57642 -27.09788 -27.03459 -25.38145 -23.83545 -23.05956 -21.71929 -21.33206 -21.20555 -19.73230 -19.04137 -17.95853 -17.69747 -17.28633 -16.81143 -16.70987 -16.46453 -16.23930 -16.00419 -15.74797 -15.48512 -15.35467 -15.21379 -15.05904 -14.63860 -14.38164 -14.18854 -13.91887 -13.57138 -13.29128 -13.12985 -12.83170 -12.78994 -12.69712 -12.34573 -12.32649 -11.91286 -11.85976 -11.82840 -11.74657 -11.37590 -10.99448 -10.86213 -10.74516 -10.63927 -10.24340 -9.46590 -9.26488 -8.63800 -5.46829 1.38131 1.41788 1.51726 1.65681 1.66746 2.54647 2.66676 2.88304 2.95284 3.00523 3.14869 3.32839 3.60046 3.69302 3.74756 3.90811 3.98481 4.06623 4.23290 4.26287 4.31423 4.46115 4.50244 4.55241 4.58188 4.59768 4.64179 4.65868 4.73550 4.75252 4.79079 4.89770 5.00627 5.03924 5.11657 5.15425 5.22350 5.30286 5.83842 5.92380 5.94087 5.98241 6.35568 6.68546 6.76156 7.07490 7.31922 8.25004 8.88133 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.003004 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.759753 B = 9317.334519 C = 9593.891887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 N -0.538 5.538 4 C 0.011 3.989 5 C 0.057 3.943 6 O -0.389 6.389 7 C 0.082 3.918 8 H 0.114 0.886 9 C 0.525 3.475 10 O -0.562 6.562 11 N -0.710 5.710 12 C 0.121 3.879 13 C 0.108 3.892 14 O -0.535 6.535 15 C 0.124 3.876 16 N -0.650 5.650 17 C -0.291 4.291 18 H 0.045 0.955 19 C -0.086 4.086 20 N -0.969 5.969 21 Si 1.104 2.896 22 H -0.272 1.272 23 H -0.304 1.304 24 H -0.251 1.251 25 C 0.072 3.928 26 C 0.033 3.967 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.032 0.968 32 H 0.114 0.886 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.413 0.587 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.386 0.614 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.245 0.755 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.114 0.886 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.467 0.318 13.709 31.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 N -0.263 5.263 4 C -0.117 4.117 5 C -0.019 4.019 6 O -0.307 6.307 7 C 0.021 3.979 8 H 0.132 0.868 9 C 0.311 3.689 10 O -0.440 6.440 11 N -0.366 5.366 12 C -0.004 4.004 13 C 0.065 3.935 14 O -0.342 6.342 15 C -0.001 4.001 16 N -0.378 5.378 17 C -0.419 4.419 18 H 0.063 0.937 19 C -0.278 4.278 20 N -0.614 5.614 21 Si 0.928 3.072 22 H -0.198 1.198 23 H -0.232 1.232 24 H -0.176 1.176 25 C -0.053 4.053 26 C -0.096 4.096 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.132 0.868 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.251 0.749 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.236 0.764 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.132 0.868 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -28.014 1.694 12.822 30.856 hybrid contribution 1.017 -1.772 1.206 2.372 sum -26.997 -0.077 14.027 30.424 Atomic orbital electron populations 1.21907 0.93643 1.02865 1.02636 1.22214 0.96904 0.87508 1.01412 1.62357 1.02585 1.12493 1.48896 1.22979 1.01017 0.94021 0.93703 1.22998 0.79132 0.96139 1.03610 1.88085 1.19678 1.69605 1.53341 1.21949 0.87880 0.93025 0.95090 0.86832 1.20460 0.88092 0.77819 0.82571 1.90724 1.81255 1.43693 1.28297 1.45675 1.06151 1.57056 1.27744 1.21699 0.79212 1.01556 0.97939 1.22673 0.93864 0.84055 0.92916 1.86660 1.27446 1.27936 1.92168 1.22662 0.91025 1.00251 0.86203 1.45937 1.18681 1.68541 1.04606 1.19934 1.03000 1.26983 0.91935 0.93720 1.27191 1.05145 1.04477 0.90948 1.71007 1.25552 1.32512 1.32332 0.83304 0.73848 0.74039 0.75976 1.19833 1.23173 1.17583 1.23695 0.86622 0.97031 0.97967 1.22652 0.90271 0.94831 1.01855 0.92088 0.91577 0.91086 0.89519 0.95007 0.86785 0.94723 0.90957 0.86505 0.74890 0.89763 0.89654 0.76425 0.93363 0.90313 0.94558 0.91178 0.92716 0.86799 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.18 71.98 0.66 -0.47 16 2 C 0.05 0.47 6.00 86.30 0.52 0.99 16 3 N -0.54 -6.72 4.88 -895.22 -4.36 -11.08 16 4 C 0.01 0.12 4.94 86.31 0.43 0.55 16 5 C 0.06 0.77 7.01 72.02 0.50 1.28 16 6 O -0.39 -8.50 10.01 -130.02 -1.30 -9.80 16 7 C 0.08 1.46 3.22 29.88 0.10 1.56 16 8 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 9 C 0.52 12.08 7.18 87.66 0.63 12.71 16 10 O -0.56 -18.42 16.51 15.93 0.26 -18.16 16 11 N -0.71 -13.29 5.30 -463.06 -2.46 -15.75 16 12 C 0.12 2.83 5.43 86.38 0.47 3.30 16 13 C 0.11 3.23 1.73 -10.37 -0.02 3.21 16 14 O -0.54 -15.76 13.56 -148.98 -2.02 -17.78 16 15 C 0.12 4.65 8.10 83.17 0.67 5.33 16 16 N -0.65 -31.33 3.62 -738.47 -2.68 -34.00 16 17 C -0.29 -17.27 11.03 84.03 0.93 -16.35 16 18 H 0.04 2.89 8.06 -2.91 -0.02 2.87 16 19 C -0.09 -5.20 5.50 84.86 0.47 -4.73 16 20 N -0.97 -63.52 13.70 21.65 0.30 -63.22 16 21 Si 1.10 52.47 25.50 68.60 1.75 54.22 16 22 H -0.27 -11.85 6.97 99.48 0.69 -11.15 16 23 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 24 H -0.25 -10.50 5.66 99.48 0.56 -9.94 16 25 C 0.07 2.69 5.05 83.26 0.42 3.11 16 26 C 0.03 0.46 4.86 86.31 0.42 0.88 16 27 H 0.06 0.42 6.28 -2.39 -0.01 0.40 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.03 0.36 8.08 -2.39 -0.02 0.34 16 32 H 0.11 0.87 6.05 -2.39 -0.01 0.86 16 33 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.41 5.24 6.81 -92.71 -0.63 4.60 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 2.08 7.90 -2.38 -0.02 2.06 16 39 H 0.39 6.96 7.21 -74.06 -0.53 6.43 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 42 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 43 H 0.07 2.45 6.82 -2.39 -0.02 2.44 16 44 H 0.05 2.08 6.22 -2.39 -0.01 2.07 16 45 H 0.11 1.09 8.01 -2.39 -0.02 1.07 16 46 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -83.49 361.73 -4.68 -88.18 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.37 Total: 16.04 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 6.19 Total: 11.37 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -9.20 Total: -124.06 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -3.06 Total: -45.74 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 1.75 Total: 54.22 kcal Total: -83.49 -4.68 -88.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484311457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.387 kcal (2) G-P(sol) polarization free energy of solvation -83.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds