Wall clock time and date at job start Fri Apr 10 2020 18:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46549 * 2 1 4 4 O 1.21280 * 120.00534 * 359.97438 * 3 2 1 5 5 N 1.34785 * 119.99449 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99770 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47002 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99907 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00065 * 179.97438 * 7 6 5 10 10 C 1.46927 * 120.63305 * 179.97438 * 9 7 6 11 11 C 1.53191 * 108.77765 * 233.62992 * 10 9 7 12 12 C 1.53042 * 109.31213 * 305.36864 * 11 10 9 13 13 O 1.42898 * 109.45707 * 301.35558 * 12 11 10 14 14 C 1.53006 * 109.45627 * 181.38563 * 12 11 10 15 15 N 1.46498 * 109.46687 * 184.99631 * 14 12 11 16 16 C 1.36943 * 119.99784 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00153 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00041 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00017 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47132 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47161 * 120.00112 * 20 18 16 23 23 H 1.48501 * 109.47165 * 240.00189 * 20 18 16 24 24 C 1.53032 * 109.54267 * 61.36468 * 12 11 10 25 25 C 1.46930 * 120.63018 * 0.02562 * 9 7 6 26 26 H 1.09000 * 109.47295 * 60.00166 * 1 2 3 27 27 H 1.09004 * 109.47039 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47175 * 299.99781 * 1 2 3 29 29 H 1.08997 * 109.46864 * 239.99904 * 2 1 3 30 30 H 1.09000 * 109.47295 * 119.99834 * 2 1 3 31 31 H 0.97003 * 120.00205 * 359.97438 * 5 3 2 32 32 H 1.08998 * 109.47154 * 59.99015 * 6 5 3 33 33 H 1.09000 * 109.46925 * 299.99612 * 6 5 3 34 34 H 1.08997 * 109.58457 * 113.84471 * 10 9 7 35 35 H 1.09000 * 109.70357 * 353.48852 * 10 9 7 36 36 H 1.08996 * 109.49697 * 185.41557 * 11 10 9 37 37 H 1.09008 * 109.49708 * 65.31800 * 11 10 9 38 38 H 0.96702 * 113.99989 * 180.02562 * 13 12 11 39 39 H 1.08992 * 109.47046 * 304.99549 * 14 12 11 40 40 H 1.08997 * 109.47395 * 65.00090 * 14 12 11 41 41 H 0.97004 * 120.00552 * 359.97438 * 15 14 12 42 42 H 0.96998 * 120.00449 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.49818 * 58.58154 * 24 12 11 44 44 H 1.08994 * 109.50136 * 178.68248 * 24 12 11 45 45 H 1.08996 * 109.58964 * 246.15670 * 25 9 7 46 46 H 1.09001 * 109.58715 * 6.58115 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8457 3.0484 0.0000 7 6 5.3527 3.0484 -0.0013 8 8 5.9591 1.9981 -0.0022 9 7 6.0265 4.2156 -0.0016 10 6 7.4957 4.2319 -0.0024 11 6 7.9799 5.0973 1.1652 12 6 7.3359 6.4823 1.0698 13 8 7.6813 7.0828 -0.1800 14 6 7.8440 7.3606 2.2150 15 7 7.1396 8.6450 2.1948 16 6 7.4293 9.5996 3.1330 17 1 8.1773 9.4057 3.8875 18 6 6.7623 10.8168 3.1135 19 7 5.8511 11.0533 2.1937 20 14 7.1579 12.1192 4.3928 21 1 8.2104 11.6101 5.3084 22 1 7.6432 13.3479 3.7146 23 1 5.9343 12.4347 5.1728 24 6 5.8146 6.3473 1.1671 25 6 5.3059 5.4961 0.0000 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9878 0.9299 -0.0005 32 1 3.4826 3.5617 0.8904 33 1 3.4819 3.5627 -0.8895 34 1 7.8559 4.6511 -0.9418 35 1 7.8745 3.2164 0.1137 36 1 9.0644 5.1963 1.1193 37 1 7.6964 4.6284 2.1076 38 1 7.3070 7.9650 -0.3093 39 1 7.6600 6.8603 3.1657 40 1 8.9138 7.5311 2.0951 41 1 6.4680 8.8193 1.5169 42 1 5.3847 11.9037 2.1803 43 1 5.5516 5.8666 2.1093 44 1 5.3580 7.3360 1.1225 45 1 5.4872 6.0186 -0.9392 46 1 4.2378 5.3141 0.1190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484949771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:41 Heat of formation + Delta-G solvation = -115.573380 kcal Electronic energy + Delta-G solvation = -26659.808720 eV Core-core repulsion = 22777.484151 eV Total energy + Delta-G solvation = -3882.324569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71877 -39.75437 -38.56195 -35.69688 -34.73041 -34.09080 -33.11273 -32.13442 -31.35772 -30.40034 -28.53463 -26.55566 -24.48809 -23.63667 -23.42788 -21.88076 -20.65338 -20.37942 -19.16964 -17.89342 -17.55307 -16.85435 -16.41135 -16.34684 -15.87738 -15.48662 -15.26522 -15.00185 -14.42373 -14.28193 -14.16878 -14.14597 -13.52002 -13.38506 -13.27291 -12.88470 -12.74549 -12.63180 -12.50953 -12.34049 -12.06001 -11.97094 -11.61051 -11.48065 -11.17537 -11.11128 -11.05589 -10.89005 -10.37350 -10.19215 -10.15985 -10.04312 -9.73194 -9.50669 -9.43707 -8.99587 -8.71067 -7.05732 -5.88080 -3.17281 2.30563 2.40009 2.53144 3.12077 3.37582 3.43951 3.45689 4.16399 4.44576 4.47595 4.50135 4.72577 4.76216 4.76888 4.92243 5.03343 5.06083 5.06977 5.13038 5.24792 5.33483 5.44314 5.47793 5.48520 5.56689 5.61808 5.72140 5.78716 5.88917 5.90696 5.96230 6.01508 6.06228 6.27316 6.29813 6.46576 6.62856 6.63948 7.18118 7.22485 7.61931 7.85331 7.95171 8.01220 8.30682 9.41881 9.94953 10.29088 11.34726 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.002691 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.733308 B =10400.958891 C =11498.836011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.512 3.488 4 O -0.540 6.540 5 N -0.721 5.721 6 C 0.099 3.901 7 C 0.511 3.489 8 O -0.549 6.549 9 N -0.599 5.599 10 C 0.118 3.882 11 C -0.117 4.117 12 C 0.130 3.870 13 O -0.561 6.561 14 C 0.128 3.872 15 N -0.730 5.730 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.158 4.158 25 C 0.107 3.893 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.411 0.589 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.383 0.617 39 H 0.026 0.974 40 H 0.030 0.970 41 H 0.381 0.619 42 H 0.256 0.744 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -20.810 -6.523 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.299 3.701 4 O -0.417 6.417 5 N -0.376 5.376 6 C -0.029 4.029 7 C 0.298 3.702 8 O -0.427 6.427 9 N -0.331 5.331 10 C -0.004 4.004 11 C -0.155 4.155 12 C 0.089 3.911 13 O -0.369 6.369 14 C 0.000 4.000 15 N -0.376 5.376 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.196 4.196 25 C -0.016 4.016 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.249 0.751 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.216 0.784 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.321 -21.156 -6.460 22.538 hybrid contribution 0.032 1.308 0.699 1.484 sum -4.290 -19.847 -5.760 21.107 Atomic orbital electron populations 1.21540 0.92845 1.01649 1.03487 1.21617 0.98708 0.93340 1.04578 1.20843 0.81529 0.92187 0.75587 1.90727 1.55261 1.46525 1.49205 1.45807 1.07705 1.08221 1.75916 1.21121 0.91323 0.85497 1.04910 1.20436 0.89661 0.83797 0.76289 1.90661 1.69868 1.30906 1.51310 1.48086 1.07560 1.05760 1.71729 1.21566 0.78239 1.01095 0.99452 1.21853 1.01423 0.93513 0.98737 1.21290 0.92464 0.92424 0.84965 1.86366 1.77472 1.36187 1.36839 1.21322 0.95955 0.87661 0.95034 1.42338 1.46579 1.12091 1.36612 1.19245 1.17449 0.93814 1.06694 0.91093 1.24734 0.98974 0.98062 0.99017 1.69632 1.28311 1.24504 1.35762 0.86101 0.77450 0.81784 0.80742 1.20560 1.21783 1.21808 1.22543 0.97134 1.01643 0.98327 1.21863 0.95935 0.83403 1.00379 0.91920 0.92009 0.91884 0.88767 0.88736 0.75100 0.88184 0.88326 0.90364 0.89260 0.89831 0.90419 0.76755 0.95656 0.95256 0.78440 0.93423 0.90682 0.88664 0.90092 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.94 6.42 -27.88 -0.18 -1.12 16 3 C 0.51 5.30 7.83 -10.98 -0.09 5.21 16 4 O -0.54 -7.65 15.98 5.56 0.09 -7.56 16 5 N -0.72 -7.04 5.53 -61.47 -0.34 -7.38 16 6 C 0.10 1.02 4.50 -5.19 -0.02 1.00 16 7 C 0.51 6.12 7.77 -10.99 -0.09 6.04 16 8 O -0.55 -7.76 15.08 5.56 0.08 -7.68 16 9 N -0.60 -7.06 2.97 -172.79 -0.51 -7.58 16 10 C 0.12 1.44 6.19 -3.71 -0.02 1.41 16 11 C -0.12 -1.49 5.11 -26.61 -0.14 -1.63 16 12 C 0.13 1.92 0.71 -90.58 -0.06 1.86 16 13 O -0.56 -8.59 11.70 -35.23 -0.41 -9.00 16 14 C 0.13 2.41 5.43 -4.04 -0.02 2.39 16 15 N -0.73 -16.96 5.07 -59.91 -0.30 -17.26 16 16 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C -0.16 -2.18 4.87 -26.64 -0.13 -2.31 16 25 C 0.11 1.21 6.10 -3.73 -0.02 1.18 16 26 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.41 3.63 7.44 -40.82 -0.30 3.33 16 32 H 0.10 1.04 7.69 -51.93 -0.40 0.64 16 33 H 0.10 0.97 7.94 -51.93 -0.41 0.56 16 34 H 0.08 0.97 7.81 -51.93 -0.41 0.57 16 35 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.38 5.87 8.19 45.56 0.37 6.24 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.38 8.96 5.55 -40.82 -0.23 8.73 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.10 1.50 6.53 -51.93 -0.34 1.16 16 45 H 0.08 0.91 7.81 -51.93 -0.41 0.50 16 46 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -32.50 369.27 -7.37 -39.87 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -6.56 Total: 13.94 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.68 Total: 6.38 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.43 Total: -58.33 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.24 Total: -24.24 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.50 -7.37 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484949771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.707 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds