Wall clock time and date at job start Fri Apr 10 2020 18:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46549 * 2 1 4 4 O 1.21280 * 120.00534 * 359.97438 * 3 2 1 5 5 N 1.34785 * 119.99449 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99770 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47002 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99907 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00065 * 179.97438 * 7 6 5 10 10 C 1.46927 * 120.63305 * 179.97438 * 9 7 6 11 11 C 1.53191 * 108.77765 * 233.62992 * 10 9 7 12 12 C 1.53042 * 109.31213 * 305.36864 * 11 10 9 13 13 O 1.42898 * 109.45707 * 301.35558 * 12 11 10 14 14 C 1.53006 * 109.45627 * 181.38563 * 12 11 10 15 15 N 1.46498 * 109.46687 * 184.99631 * 14 12 11 16 16 C 1.36943 * 119.99784 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00153 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00041 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00017 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47132 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47161 * 120.00112 * 20 18 16 23 23 H 1.48501 * 109.47165 * 240.00189 * 20 18 16 24 24 C 1.53032 * 109.54267 * 61.36468 * 12 11 10 25 25 C 1.46930 * 120.63018 * 0.02562 * 9 7 6 26 26 H 1.09000 * 109.47295 * 60.00166 * 1 2 3 27 27 H 1.09004 * 109.47039 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47175 * 299.99781 * 1 2 3 29 29 H 1.08997 * 109.46864 * 239.99904 * 2 1 3 30 30 H 1.09000 * 109.47295 * 119.99834 * 2 1 3 31 31 H 0.97003 * 120.00205 * 359.97438 * 5 3 2 32 32 H 1.08998 * 109.47154 * 59.99015 * 6 5 3 33 33 H 1.09000 * 109.46925 * 299.99612 * 6 5 3 34 34 H 1.08997 * 109.58457 * 113.84471 * 10 9 7 35 35 H 1.09000 * 109.70357 * 353.48852 * 10 9 7 36 36 H 1.08996 * 109.49697 * 185.41557 * 11 10 9 37 37 H 1.09008 * 109.49708 * 65.31800 * 11 10 9 38 38 H 0.96702 * 113.99989 * 180.02562 * 13 12 11 39 39 H 1.08992 * 109.47046 * 304.99549 * 14 12 11 40 40 H 1.08997 * 109.47395 * 65.00090 * 14 12 11 41 41 H 0.97004 * 120.00552 * 359.97438 * 15 14 12 42 42 H 0.96998 * 120.00449 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.49818 * 58.58154 * 24 12 11 44 44 H 1.08994 * 109.50136 * 178.68248 * 24 12 11 45 45 H 1.08996 * 109.58964 * 246.15670 * 25 9 7 46 46 H 1.09001 * 109.58715 * 6.58115 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8457 3.0484 0.0000 7 6 5.3527 3.0484 -0.0013 8 8 5.9591 1.9981 -0.0022 9 7 6.0265 4.2156 -0.0016 10 6 7.4957 4.2319 -0.0024 11 6 7.9799 5.0973 1.1652 12 6 7.3359 6.4823 1.0698 13 8 7.6813 7.0828 -0.1800 14 6 7.8440 7.3606 2.2150 15 7 7.1396 8.6450 2.1948 16 6 7.4293 9.5996 3.1330 17 1 8.1773 9.4057 3.8875 18 6 6.7623 10.8168 3.1135 19 7 5.8511 11.0533 2.1937 20 14 7.1579 12.1192 4.3928 21 1 8.2104 11.6101 5.3084 22 1 7.6432 13.3479 3.7146 23 1 5.9343 12.4347 5.1728 24 6 5.8146 6.3473 1.1671 25 6 5.3059 5.4961 0.0000 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9878 0.9299 -0.0005 32 1 3.4826 3.5617 0.8904 33 1 3.4819 3.5627 -0.8895 34 1 7.8559 4.6511 -0.9418 35 1 7.8745 3.2164 0.1137 36 1 9.0644 5.1963 1.1193 37 1 7.6964 4.6284 2.1076 38 1 7.3070 7.9650 -0.3093 39 1 7.6600 6.8603 3.1657 40 1 8.9138 7.5311 2.0951 41 1 6.4680 8.8193 1.5169 42 1 5.3847 11.9037 2.1803 43 1 5.5516 5.8666 2.1093 44 1 5.3580 7.3360 1.1225 45 1 5.4872 6.0186 -0.9392 46 1 4.2378 5.3141 0.1190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484949771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:40 Heat of formation + Delta-G solvation = -140.861174 kcal Electronic energy + Delta-G solvation = -26660.905281 eV Core-core repulsion = 22777.484151 eV Total energy + Delta-G solvation = -3883.421130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69902 -40.67210 -39.69376 -36.90496 -35.80439 -35.59939 -33.74619 -33.50437 -32.66093 -31.82913 -29.50941 -27.97387 -25.68566 -24.80635 -24.50852 -23.23431 -21.54464 -21.43073 -20.18099 -19.45410 -18.72844 -17.78726 -17.42875 -17.22862 -17.01029 -16.73105 -16.36463 -16.21005 -15.81949 -15.66693 -15.09787 -15.06999 -14.97848 -14.56169 -14.41746 -14.18191 -14.02839 -13.59088 -13.42615 -13.24874 -13.12698 -13.00139 -12.82722 -12.71933 -12.62495 -12.30759 -12.22092 -12.05341 -12.01352 -11.98767 -11.33238 -11.10627 -11.00301 -10.99112 -10.74467 -10.27343 -9.74064 -9.02760 -7.97988 -5.25910 1.36769 1.46952 1.48067 1.57080 1.60660 1.65162 2.30807 2.53998 3.23170 3.26995 3.40296 3.63872 3.72134 3.80687 3.87743 4.01091 4.18923 4.21541 4.23627 4.29404 4.30788 4.32728 4.40541 4.56049 4.70226 4.74744 4.75328 4.81528 4.88072 4.97193 5.01523 5.07102 5.08130 5.13619 5.21066 5.32232 5.39233 5.44380 5.49217 6.23376 6.24682 6.45995 6.74290 6.89910 7.17891 7.32648 8.03639 8.28808 9.24811 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.002691 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.733308 B =10400.958891 C =11498.836011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.508 3.492 4 O -0.584 6.584 5 N -0.716 5.716 6 C 0.100 3.900 7 C 0.515 3.485 8 O -0.569 6.569 9 N -0.598 5.598 10 C 0.123 3.877 11 C -0.111 4.111 12 C 0.137 3.863 13 O -0.561 6.561 14 C 0.127 3.873 15 N -0.737 5.737 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.068 4.068 19 N -0.963 5.963 20 Si 0.968 3.032 21 H -0.270 1.270 22 H -0.293 1.293 23 H -0.294 1.294 24 C -0.152 4.152 25 C 0.114 3.886 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.418 0.582 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.382 0.618 39 H 0.026 0.974 40 H 0.021 0.979 41 H 0.378 0.622 42 H 0.252 0.748 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -22.462 -6.549 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.296 3.704 4 O -0.464 6.464 5 N -0.371 5.371 6 C -0.027 4.027 7 C 0.303 3.697 8 O -0.449 6.449 9 N -0.330 5.330 10 C 0.001 3.999 11 C -0.150 4.150 12 C 0.096 3.904 13 O -0.368 6.368 14 C 0.000 4.000 15 N -0.382 5.382 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.261 4.261 19 N -0.613 5.613 20 Si 0.798 3.202 21 H -0.195 1.195 22 H -0.220 1.220 23 H -0.221 1.221 24 C -0.190 4.190 25 C -0.008 4.008 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.256 0.744 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.231 0.769 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.212 0.788 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.060 -22.850 -6.480 24.096 hybrid contribution 0.018 1.771 0.717 1.911 sum -4.042 -21.079 -5.764 22.224 Atomic orbital electron populations 1.21551 0.93337 1.02726 1.01953 1.21696 0.98175 0.91011 1.06747 1.21553 0.81142 0.93335 0.74339 1.90709 1.56223 1.48149 1.51349 1.45829 1.07815 1.08130 1.75369 1.21109 0.90091 0.86213 1.05316 1.20619 0.90142 0.83354 0.75564 1.90653 1.70426 1.31559 1.52280 1.48097 1.07509 1.05886 1.71518 1.21500 0.78454 1.00949 0.98963 1.21828 1.01709 0.92061 0.99391 1.21233 0.93277 0.92561 0.83292 1.86371 1.77564 1.36150 1.36762 1.21459 0.95117 0.86566 0.96813 1.42445 1.46785 1.13075 1.35848 1.19574 1.16730 0.94526 1.06914 0.91141 1.25452 0.99476 1.00080 1.01084 1.69758 1.29458 1.24740 1.37367 0.85155 0.77180 0.79220 0.78673 1.19465 1.22043 1.22074 1.22422 0.96186 1.01034 0.99389 1.21830 0.96855 0.82808 0.99335 0.93381 0.89558 0.93549 0.86358 0.86531 0.74372 0.88062 0.87609 0.90395 0.88993 0.89187 0.89938 0.76872 0.95630 0.96063 0.78802 0.93891 0.90978 0.90720 0.89594 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.20 71.98 0.66 -1.10 16 2 C -0.14 -1.50 6.42 29.85 0.19 -1.31 16 3 C 0.51 9.86 7.83 87.66 0.69 10.55 16 4 O -0.58 -16.36 15.98 -3.03 -0.05 -16.40 16 5 N -0.72 -12.82 5.53 -466.78 -2.58 -15.40 16 6 C 0.10 1.92 4.50 85.63 0.39 2.31 16 7 C 0.51 11.44 7.77 87.66 0.68 12.12 16 8 O -0.57 -15.09 15.08 -3.03 -0.05 -15.14 16 9 N -0.60 -13.07 2.97 -818.98 -2.43 -15.50 16 10 C 0.12 2.77 6.19 86.36 0.53 3.31 16 11 C -0.11 -2.67 5.11 30.67 0.16 -2.52 16 12 C 0.14 3.97 0.71 -10.77 -0.01 3.96 16 13 O -0.56 -16.74 11.70 -148.98 -1.74 -18.48 16 14 C 0.13 4.76 5.43 86.38 0.47 5.23 16 15 N -0.74 -34.37 5.07 -343.46 -1.74 -36.11 16 16 C -0.25 -13.15 9.99 84.03 0.84 -12.31 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 18 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 19 N -0.96 -55.87 13.06 21.65 0.28 -55.58 16 20 Si 0.97 44.94 29.55 68.60 2.03 46.97 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 C -0.15 -4.09 4.87 30.66 0.15 -3.94 16 25 C 0.11 2.41 6.10 86.35 0.53 2.93 16 26 H 0.05 0.74 8.10 -2.39 -0.02 0.73 16 27 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 29 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.42 6.54 7.44 -92.71 -0.69 5.85 16 32 H 0.10 1.96 7.69 -2.39 -0.02 1.94 16 33 H 0.11 1.91 7.94 -2.39 -0.02 1.90 16 34 H 0.08 1.79 7.81 -2.39 -0.02 1.77 16 35 H 0.09 2.07 7.01 -2.39 -0.02 2.06 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.38 11.66 8.19 -74.06 -0.61 11.05 16 39 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.38 18.01 5.55 -92.71 -0.51 17.50 16 42 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 2.36 6.53 -2.39 -0.02 2.35 16 45 H 0.09 1.78 7.81 -2.39 -0.02 1.77 16 46 H 0.10 1.81 5.93 -2.39 -0.01 1.79 16 Total: -1.00 -69.01 369.27 -1.34 -70.35 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.80 Total: 39.35 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 5.74 Total: 15.95 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -6.47 Total: -122.60 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -1.84 Total: -50.02 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.01 -1.34 -70.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484949771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.510 kcal (2) G-P(sol) polarization free energy of solvation -69.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds