Wall clock time and date at job start Fri Apr 10 2020 18:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 H 1.09000 * 109.47452 * 329.99861 * 3 2 1 5 5 C 1.53004 * 109.47242 * 89.99862 * 3 2 1 6 6 C 1.50701 * 109.46989 * 209.99565 * 3 2 1 7 7 O 1.21280 * 120.00173 * 0.02562 * 6 3 2 8 8 N 1.34775 * 120.00031 * 179.97438 * 6 3 2 9 9 C 1.46497 * 120.00224 * 180.02562 * 8 6 3 10 10 H 1.09004 * 112.85052 * 23.80392 * 9 8 6 11 11 C 1.53778 * 113.61809 * 154.99935 * 9 8 6 12 12 C 1.53785 * 87.08165 * 89.11680 * 11 9 8 13 13 H 1.09000 * 113.61135 * 270.88617 * 12 11 9 14 14 C 1.52995 * 113.61475 * 139.98012 * 12 11 9 15 15 N 1.46904 * 109.47052 * 174.99912 * 14 12 11 16 16 C 1.46902 * 111.00108 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47124 * 180.02562 * 16 15 14 18 18 O 1.21285 * 120.00192 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99806 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00207 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99282 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00278 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00012 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99918 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47180 * 60.00861 * 24 22 20 26 26 H 1.48506 * 109.47220 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47588 * 300.00626 * 24 22 20 28 28 C 1.53784 * 113.61668 * 252.50200 * 9 8 6 29 29 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 30 30 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 32 32 H 1.09000 * 109.46900 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.47138 * 299.99769 * 5 3 2 34 34 H 1.09000 * 109.46898 * 59.99659 * 5 3 2 35 35 H 0.97009 * 120.00020 * 359.97438 * 8 6 3 36 36 H 1.09004 * 113.61710 * 203.66267 * 11 9 8 37 37 H 1.08996 * 113.61617 * 334.57171 * 11 9 8 38 38 H 1.08996 * 109.47467 * 295.00363 * 14 12 11 39 39 H 1.09001 * 109.47240 * 55.00559 * 14 12 11 40 40 H 1.00903 * 110.99520 * 56.05307 * 15 14 12 41 41 H 1.08998 * 109.47153 * 300.00639 * 16 15 14 42 42 H 1.08997 * 109.47010 * 59.99814 * 16 15 14 43 43 H 0.97004 * 120.00541 * 359.97438 * 19 17 16 44 44 H 0.96998 * 119.99702 * 179.97438 * 23 22 20 45 45 H 1.08999 * 113.61491 * 25.42224 * 28 9 8 46 46 H 1.08995 * 113.61520 * 156.33318 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3387 1.2639 -0.7103 7 8 3.7473 0.2193 -1.1716 8 7 4.0722 2.3878 -0.8339 9 6 5.3633 2.3475 -1.5249 10 1 5.4412 1.5187 -2.2286 11 6 5.7869 3.7014 -2.1186 12 6 6.4592 3.9948 -0.7670 13 1 5.7980 4.4752 -0.0457 14 6 7.8120 4.6978 -0.8952 15 7 8.3146 5.0402 0.4421 16 6 9.6148 5.7187 0.3581 17 6 10.0976 6.0530 1.7459 18 8 9.4251 5.7548 2.7102 19 7 11.2767 6.6832 1.9156 20 6 11.7158 6.9878 3.1782 21 1 11.1169 6.7223 4.0367 22 6 12.9317 7.6371 3.3531 23 7 13.6606 7.9597 2.3084 24 14 13.5302 8.0514 5.0734 25 1 13.6746 6.8012 5.8618 26 1 14.8443 8.7380 4.9885 27 1 12.5475 8.9449 5.7378 28 6 6.5712 2.4723 -0.5813 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.6613 2.7670 1.4425 33 1 1.2568 1.8015 1.9563 34 1 2.8828 1.0775 1.9564 35 1 3.7449 3.2235 -0.4660 36 1 6.4906 3.6142 -2.9464 37 1 4.9488 4.3616 -2.3418 38 1 8.5207 4.0344 -1.3908 39 1 7.6942 5.6081 -1.4830 40 1 8.3714 4.2205 1.0278 41 1 10.3362 5.0628 -0.1291 42 1 9.5090 6.6361 -0.2210 43 1 11.8148 6.9214 1.1444 44 1 14.5093 8.4133 2.4305 45 1 6.3664 2.1404 0.4365 46 1 7.4893 2.0492 -0.9889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485675751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:59 Heat of formation + Delta-G solvation = -98.779876 kcal Electronic energy + Delta-G solvation = -25302.371973 eV Core-core repulsion = 21420.775624 eV Total energy + Delta-G solvation = -3881.596348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.68612 -39.20987 -38.21487 -37.62649 -35.22759 -33.92998 -33.53066 -31.61586 -31.20315 -28.50040 -27.23382 -26.02367 -25.69351 -24.61570 -23.60407 -22.03784 -21.00494 -19.56058 -19.10463 -17.91143 -17.81759 -17.25412 -16.40849 -16.10919 -15.72484 -15.50353 -15.35633 -15.00971 -14.62353 -14.47698 -14.08851 -13.99701 -13.69630 -13.62150 -13.23847 -13.05453 -12.95819 -12.77103 -12.63781 -12.34354 -12.21061 -11.72226 -11.60630 -11.54722 -11.49603 -11.04897 -10.96331 -10.64163 -10.43957 -10.42096 -10.29176 -10.20130 -9.82388 -9.49584 -9.30998 -8.45257 -8.04332 -7.95154 -6.41184 -3.82063 2.27521 2.50023 3.20443 3.26001 3.30468 3.54672 3.91739 4.06406 4.22114 4.25245 4.30888 4.42738 4.50875 4.56701 4.67021 4.82512 4.85118 4.92374 5.10201 5.14417 5.24515 5.25860 5.25988 5.32737 5.45442 5.49079 5.53727 5.59985 5.67264 5.72208 5.79915 5.87729 5.98532 6.00107 6.05629 6.27448 6.37646 6.58846 7.17344 7.24920 7.55406 7.69207 7.91775 8.06817 8.61994 9.18313 9.54998 10.06610 10.76490 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.001895 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.366908 B =14770.295218 C =15560.479774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.088 0.912 5 C -0.173 4.173 6 C 0.516 3.484 7 O -0.519 6.519 8 N -0.709 5.709 9 C 0.120 3.880 10 H 0.102 0.898 11 C -0.139 4.139 12 C -0.105 4.105 13 H 0.099 0.901 14 C 0.068 3.932 15 N -0.669 5.669 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.150 4.150 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.349 0.651 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.073 0.927 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.330 -9.425 -10.464 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.105 0.895 5 C -0.230 4.230 6 C 0.301 3.699 7 O -0.393 6.393 8 N -0.362 5.362 9 C 0.015 3.985 10 H 0.120 0.880 11 C -0.177 4.177 12 C -0.124 4.124 13 H 0.118 0.882 14 C -0.061 4.061 15 N -0.301 5.301 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.189 4.189 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.237 0.763 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.168 0.832 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.542 -9.896 -10.118 26.616 hybrid contribution 0.996 0.412 0.310 1.122 sum -21.545 -9.483 -9.808 25.501 Atomic orbital electron populations 1.22894 0.80497 1.03353 1.00064 1.88058 1.19755 1.25067 1.94927 1.21939 0.93367 0.86982 0.96886 0.89471 1.22259 1.03646 1.02276 0.94850 1.20404 0.85882 0.83887 0.79691 1.90730 1.71366 1.30106 1.47064 1.45604 1.20412 1.11264 1.58933 1.21835 0.82383 0.99221 0.95067 0.88038 1.23345 1.00687 0.95903 0.97803 1.22630 0.97369 0.95157 0.97255 0.88232 1.21951 0.94283 0.98846 0.91069 1.60088 1.26917 1.31732 1.11361 1.21670 0.90118 0.99429 0.97042 1.19827 0.83275 0.84325 0.89970 1.90515 1.56841 1.57891 1.41564 1.41862 1.17655 1.51307 1.09229 1.19658 1.03145 1.34949 0.85228 0.87987 1.25260 0.96185 0.97149 0.99343 1.69605 1.13860 1.41179 1.29695 0.85913 0.77728 0.78778 0.81758 1.19926 1.20981 1.19899 1.23535 0.98257 0.96356 1.00761 0.93820 0.89075 0.93716 0.90679 0.91084 0.90839 0.76323 0.88618 0.90797 0.95376 0.91056 0.83205 0.93977 0.89667 0.77461 0.91835 0.90809 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.36 -3.66 9.88 -55.14 -0.54 -4.20 16 3 C 0.07 0.55 3.14 -27.88 -0.09 0.46 16 4 H 0.09 0.45 7.79 -51.93 -0.40 0.04 16 5 C -0.17 -1.09 9.42 37.16 0.35 -0.74 16 6 C 0.52 5.48 7.23 -10.99 -0.08 5.40 16 7 O -0.52 -7.94 16.10 -14.35 -0.23 -8.17 16 8 N -0.71 -5.74 5.15 -53.02 -0.27 -6.01 16 9 C 0.12 1.06 4.32 -67.12 -0.29 0.77 16 10 H 0.10 1.04 7.46 -51.93 -0.39 0.66 16 11 C -0.14 -1.02 7.39 -25.92 -0.19 -1.21 16 12 C -0.11 -0.98 3.78 -89.80 -0.34 -1.32 16 13 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 14 C 0.07 0.78 5.52 -3.82 -0.02 0.76 16 15 N -0.67 -10.60 6.13 -115.06 -0.70 -11.30 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 17 C 0.44 10.46 7.82 -10.99 -0.09 10.38 16 18 O -0.58 -15.94 15.78 5.55 0.09 -15.86 16 19 N -0.56 -14.37 5.29 -10.97 -0.06 -14.43 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C -0.15 -1.45 7.43 -25.91 -0.19 -1.65 16 29 H 0.04 0.21 8.09 -51.93 -0.42 -0.21 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 32 H 0.07 0.36 7.57 -51.93 -0.39 -0.03 16 33 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 2.24 8.12 -40.82 -0.33 1.91 16 36 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.31 7.84 -51.93 -0.41 -0.10 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.86 7.90 -51.93 -0.41 0.45 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -35.14 386.01 -7.86 -43.00 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -7.54 Total: 12.02 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.12 Total: 6.90 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.31 Total: -55.60 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.69 Total: -28.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.14 -7.86 -43.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485675751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.784 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds