Wall clock time and date at job start Fri Apr 10 2020 18:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 H 1.09000 * 109.47452 * 329.99861 * 3 2 1 5 5 C 1.53004 * 109.47242 * 89.99862 * 3 2 1 6 6 C 1.50701 * 109.46989 * 209.99565 * 3 2 1 7 7 O 1.21280 * 120.00173 * 0.02562 * 6 3 2 8 8 N 1.34775 * 120.00031 * 179.97438 * 6 3 2 9 9 C 1.46497 * 120.00224 * 180.02562 * 8 6 3 10 10 H 1.09004 * 112.85052 * 23.80392 * 9 8 6 11 11 C 1.53778 * 113.61809 * 154.99935 * 9 8 6 12 12 C 1.53785 * 87.08165 * 89.11680 * 11 9 8 13 13 H 1.09000 * 113.61135 * 270.88617 * 12 11 9 14 14 C 1.52995 * 113.61475 * 139.98012 * 12 11 9 15 15 N 1.46904 * 109.47052 * 174.99912 * 14 12 11 16 16 C 1.46902 * 111.00108 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47124 * 180.02562 * 16 15 14 18 18 O 1.21285 * 120.00192 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99806 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00207 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99282 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00278 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00012 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99918 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47180 * 60.00861 * 24 22 20 26 26 H 1.48506 * 109.47220 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47588 * 300.00626 * 24 22 20 28 28 C 1.53784 * 113.61668 * 252.50200 * 9 8 6 29 29 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 30 30 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 32 32 H 1.09000 * 109.46900 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.47138 * 299.99769 * 5 3 2 34 34 H 1.09000 * 109.46898 * 59.99659 * 5 3 2 35 35 H 0.97009 * 120.00020 * 359.97438 * 8 6 3 36 36 H 1.09004 * 113.61710 * 203.66267 * 11 9 8 37 37 H 1.08996 * 113.61617 * 334.57171 * 11 9 8 38 38 H 1.08996 * 109.47467 * 295.00363 * 14 12 11 39 39 H 1.09001 * 109.47240 * 55.00559 * 14 12 11 40 40 H 1.00903 * 110.99520 * 56.05307 * 15 14 12 41 41 H 1.08998 * 109.47153 * 300.00639 * 16 15 14 42 42 H 1.08997 * 109.47010 * 59.99814 * 16 15 14 43 43 H 0.97004 * 120.00541 * 359.97438 * 19 17 16 44 44 H 0.96998 * 119.99702 * 179.97438 * 23 22 20 45 45 H 1.08999 * 113.61491 * 25.42224 * 28 9 8 46 46 H 1.08995 * 113.61520 * 156.33318 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3387 1.2639 -0.7103 7 8 3.7473 0.2193 -1.1716 8 7 4.0722 2.3878 -0.8339 9 6 5.3633 2.3475 -1.5249 10 1 5.4412 1.5187 -2.2286 11 6 5.7869 3.7014 -2.1186 12 6 6.4592 3.9948 -0.7670 13 1 5.7980 4.4752 -0.0457 14 6 7.8120 4.6978 -0.8952 15 7 8.3146 5.0402 0.4421 16 6 9.6148 5.7187 0.3581 17 6 10.0976 6.0530 1.7459 18 8 9.4251 5.7548 2.7102 19 7 11.2767 6.6832 1.9156 20 6 11.7158 6.9878 3.1782 21 1 11.1169 6.7223 4.0367 22 6 12.9317 7.6371 3.3531 23 7 13.6606 7.9597 2.3084 24 14 13.5302 8.0514 5.0734 25 1 13.6746 6.8012 5.8618 26 1 14.8443 8.7380 4.9885 27 1 12.5475 8.9449 5.7378 28 6 6.5712 2.4723 -0.5813 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.6613 2.7670 1.4425 33 1 1.2568 1.8015 1.9563 34 1 2.8828 1.0775 1.9564 35 1 3.7449 3.2235 -0.4660 36 1 6.4906 3.6142 -2.9464 37 1 4.9488 4.3616 -2.3418 38 1 8.5207 4.0344 -1.3908 39 1 7.6942 5.6081 -1.4830 40 1 8.3714 4.2205 1.0278 41 1 10.3362 5.0628 -0.1291 42 1 9.5090 6.6361 -0.2210 43 1 11.8148 6.9214 1.1444 44 1 14.5093 8.4133 2.4305 45 1 6.3664 2.1404 0.4365 46 1 7.4893 2.0492 -0.9889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485675751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:58 Heat of formation + Delta-G solvation = -126.379112 kcal Electronic energy + Delta-G solvation = -25303.568765 eV Core-core repulsion = 21420.775624 eV Total energy + Delta-G solvation = -3882.793141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.45608 -40.21899 -39.79591 -38.38703 -36.52603 -35.77261 -34.48639 -33.25929 -32.22397 -29.71945 -27.70683 -27.31910 -26.63237 -25.66799 -24.81004 -22.93490 -21.72507 -21.12559 -20.18637 -19.86209 -18.57647 -17.87672 -17.84963 -17.08770 -16.86901 -16.49105 -16.36368 -16.18295 -15.87326 -15.64395 -15.42855 -15.23736 -14.93246 -14.40974 -14.32530 -14.12806 -13.79820 -13.55860 -13.48963 -13.34094 -13.33166 -13.07731 -12.84705 -12.78046 -12.54820 -12.43333 -12.13525 -12.12501 -11.80449 -11.50192 -11.42901 -11.07704 -11.07035 -10.54617 -10.33771 -10.07922 -10.01550 -9.29285 -8.46389 -5.95330 1.40083 1.41953 1.48806 1.52918 1.84883 2.05702 2.29518 2.94321 2.99917 3.20840 3.50617 3.55877 3.63488 3.76509 3.89790 3.91684 3.99329 4.03131 4.33962 4.44746 4.46464 4.51449 4.54427 4.56705 4.64977 4.69779 4.77940 4.80271 4.83043 4.85801 4.88582 4.92141 5.08660 5.18442 5.19928 5.29471 5.40775 5.64078 5.91445 6.06081 6.14181 6.43561 6.51805 6.60463 7.12624 7.18462 7.56516 8.11882 8.70685 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.001895 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.366908 B =14770.295218 C =15560.479774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.071 3.929 4 H 0.121 0.879 5 C -0.168 4.168 6 C 0.510 3.490 7 O -0.575 6.575 8 N -0.694 5.694 9 C 0.117 3.883 10 H 0.085 0.915 11 C -0.118 4.118 12 C -0.100 4.100 13 H 0.097 0.903 14 C 0.069 3.931 15 N -0.682 5.682 16 C 0.064 3.936 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 C -0.153 4.153 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.417 0.583 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.038 0.962 39 H 0.083 0.917 40 H 0.341 0.659 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.056 0.944 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.159 -8.149 -11.234 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.318 6.318 3 C 0.010 3.990 4 H 0.138 0.862 5 C -0.226 4.226 6 C 0.297 3.703 7 O -0.454 6.454 8 N -0.348 5.348 9 C 0.011 3.989 10 H 0.104 0.896 11 C -0.156 4.156 12 C -0.119 4.119 13 H 0.115 0.885 14 C -0.060 4.060 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.192 4.192 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.254 0.746 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.159 0.841 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.380 -8.572 -10.914 27.189 hybrid contribution 1.215 -0.011 0.528 1.325 sum -22.164 -8.584 -10.386 25.939 Atomic orbital electron populations 1.23091 0.78587 1.04148 1.01533 1.88011 1.22014 1.26589 1.95171 1.22079 0.92253 0.87048 0.97641 0.86177 1.22255 1.04231 1.02381 0.93713 1.21054 0.86848 0.83434 0.78948 1.90698 1.72860 1.32154 1.49663 1.45521 1.19825 1.11392 1.58031 1.21814 0.82368 0.99898 0.94793 0.89639 1.23262 1.01061 0.94485 0.96798 1.22558 0.96494 0.94164 0.98636 0.88519 1.22073 0.95183 0.99807 0.88900 1.60121 1.25832 1.31676 1.13796 1.21542 0.91454 1.01004 0.92832 1.20936 0.82108 0.82426 0.92146 1.90482 1.57753 1.59035 1.43811 1.41937 1.18494 1.52002 1.08608 1.19640 1.04089 1.37017 0.85827 0.90344 1.26040 0.95702 0.96320 1.03184 1.69666 1.14105 1.41007 1.31260 0.84987 0.77614 0.78524 0.77191 1.19769 1.19446 1.19690 1.23551 0.98773 0.96943 0.99958 0.92549 0.88810 0.91932 0.88983 0.89307 0.93203 0.74568 0.87407 0.88931 0.94350 0.89909 0.84095 0.91872 0.87667 0.76957 0.91287 0.92557 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.46 16 2 O -0.40 -7.99 9.88 -129.94 -1.28 -9.28 16 3 C 0.07 1.04 3.14 29.85 0.09 1.13 16 4 H 0.12 0.92 7.79 -2.39 -0.02 0.90 16 5 C -0.17 -1.91 9.42 71.98 0.68 -1.23 16 6 C 0.51 10.77 7.23 87.66 0.63 11.41 16 7 O -0.58 -18.33 16.10 16.01 0.26 -18.07 16 8 N -0.69 -10.51 5.15 -440.04 -2.27 -12.77 16 9 C 0.12 1.96 4.32 45.52 0.20 2.16 16 10 H 0.09 1.77 7.46 -2.39 -0.02 1.75 16 11 C -0.12 -1.41 7.39 31.12 0.23 -1.18 16 12 C -0.10 -1.67 3.78 -10.27 -0.04 -1.71 16 13 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 14 C 0.07 1.42 5.52 86.30 0.48 1.89 16 15 N -0.68 -20.69 6.13 -517.94 -3.17 -23.86 16 16 C 0.06 2.16 6.17 85.56 0.53 2.69 16 17 C 0.44 20.80 7.82 87.66 0.69 21.48 16 18 O -0.62 -34.75 15.78 -3.05 -0.05 -34.80 16 19 N -0.57 -29.50 5.29 -307.00 -1.62 -31.12 16 20 C -0.34 -19.18 9.68 84.04 0.81 -18.37 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 24 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 28 C -0.15 -2.89 7.43 31.12 0.23 -2.65 16 29 H 0.06 0.43 8.09 -2.39 -0.02 0.41 16 30 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 0.42 7.87 -2.39 -0.02 0.40 16 32 H 0.09 0.70 7.57 -2.39 -0.02 0.68 16 33 H 0.09 0.70 7.87 -2.39 -0.02 0.68 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.42 3.76 8.12 -92.70 -0.75 3.01 16 36 H 0.11 1.10 8.10 -2.38 -0.02 1.08 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.04 0.74 7.84 -2.39 -0.02 0.72 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.34 11.22 8.43 -89.69 -0.76 10.46 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 44 H 0.28 14.04 8.31 -92.71 -0.77 13.26 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.09 1.68 7.90 -2.39 -0.02 1.66 16 Total: -1.00 -78.36 386.01 -0.84 -79.20 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: -1.24 Total: 38.15 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 6.22 Total: 16.87 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -6.78 Total: -117.04 kcal Atomic # 8 Polarization: -61.07 SS G_CDS: -1.07 Total: -62.14 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -78.36 -0.84 -79.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485675751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.181 kcal (2) G-P(sol) polarization free energy of solvation -78.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds