Wall clock time and date at job start Fri Apr 10 2020 18:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00175 * 2 1 4 4 H 1.09001 * 109.46749 * 29.99937 * 3 2 1 5 5 C 1.53003 * 109.46746 * 270.00084 * 3 2 1 6 6 C 1.50699 * 109.47214 * 149.99666 * 3 2 1 7 7 O 1.21278 * 119.99997 * 5.00398 * 6 3 2 8 8 N 1.34776 * 119.99546 * 184.99549 * 6 3 2 9 9 C 1.46506 * 119.99649 * 179.97438 * 8 6 3 10 10 H 1.09007 * 112.84595 * 23.81259 * 9 8 6 11 11 C 1.53779 * 113.61276 * 155.00300 * 9 8 6 12 12 C 1.53787 * 87.07963 * 89.20243 * 11 9 8 13 13 H 1.08994 * 113.61447 * 270.88515 * 12 11 9 14 14 C 1.52997 * 113.61251 * 139.97890 * 12 11 9 15 15 N 1.46901 * 109.47093 * 175.00268 * 14 12 11 16 16 C 1.46905 * 111.00132 * 180.02562 * 15 14 12 17 17 C 1.50694 * 109.47059 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00145 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00013 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00148 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99809 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00228 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00075 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99742 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47354 * 89.99538 * 24 22 20 26 26 H 1.48498 * 109.46736 * 209.99460 * 24 22 20 27 27 H 1.48503 * 109.46930 * 329.99580 * 24 22 20 28 28 C 1.53779 * 113.69339 * 252.54233 * 9 8 6 29 29 H 1.09010 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47490 * 300.00182 * 1 2 3 31 31 H 1.09003 * 109.47184 * 60.00210 * 1 2 3 32 32 H 1.08999 * 109.46361 * 179.97438 * 5 3 2 33 33 H 1.08991 * 109.47195 * 299.99388 * 5 3 2 34 34 H 1.08992 * 109.47161 * 60.00163 * 5 3 2 35 35 H 0.96998 * 120.00727 * 0.02562 * 8 6 3 36 36 H 1.08997 * 113.61646 * 334.65874 * 11 9 8 37 37 H 1.08998 * 113.69354 * 203.76183 * 11 9 8 38 38 H 1.08998 * 109.47573 * 295.00161 * 14 12 11 39 39 H 1.09003 * 109.47157 * 55.00680 * 14 12 11 40 40 H 1.00897 * 111.00325 * 56.04538 * 15 14 12 41 41 H 1.08999 * 109.46737 * 299.99660 * 16 15 14 42 42 H 1.08997 * 109.46946 * 60.00069 * 16 15 14 43 43 H 0.96997 * 119.99911 * 0.02562 * 19 17 16 44 44 H 0.97005 * 120.00284 * 180.02562 * 23 22 20 45 45 H 1.09002 * 113.61557 * 156.32618 * 28 9 8 46 46 H 1.09004 * 113.61501 * 25.42039 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7713 -1.4426 6 6 3.3386 1.2639 0.7105 7 8 3.7896 0.2045 1.0914 8 7 4.0254 2.4040 0.9223 9 6 5.3165 2.3637 1.6135 10 1 5.8052 1.3921 1.5410 11 6 6.2384 3.5444 1.2659 12 6 5.5798 4.3000 2.4322 13 1 4.6906 4.8601 2.1430 14 6 6.5642 5.1304 3.2582 15 7 5.8270 5.9033 4.2668 16 6 6.7420 6.7151 5.0803 17 6 5.9515 7.4916 6.1016 18 8 4.7445 7.3801 6.1471 19 7 6.5855 8.3107 6.9639 20 6 5.8663 9.0175 7.8928 21 1 4.7917 8.9176 7.9337 22 6 6.5200 9.8616 8.7821 23 7 5.8306 10.5394 9.6720 24 14 8.3787 10.0338 8.7116 25 1 8.7389 11.1377 7.7858 26 1 8.8995 10.3364 10.0690 27 1 8.9753 8.7643 8.2241 28 6 5.2690 2.9241 3.0448 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.6606 2.7672 -1.4425 33 1 2.8829 1.0775 -1.9563 34 1 1.2569 1.8014 -1.9563 35 1 3.6645 3.2514 0.6179 36 1 6.0347 3.9849 0.2899 37 1 7.2964 3.3351 1.4233 38 1 7.2719 4.4667 3.7550 39 1 7.1047 5.8122 2.6017 40 1 5.2665 5.2980 4.8477 41 1 7.4512 6.0627 5.5897 42 1 7.2834 7.4078 4.4361 43 1 7.5506 8.4007 6.9268 44 1 6.2869 11.1290 10.2927 45 1 6.0617 2.5439 3.6891 46 1 4.2826 2.8637 3.5048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485675752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:02 Heat of formation + Delta-G solvation = -91.855135 kcal Electronic energy + Delta-G solvation = -25299.125828 eV Core-core repulsion = 21417.829758 eV Total energy + Delta-G solvation = -3881.296069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71104 -39.25272 -38.40748 -37.65276 -35.32418 -33.97705 -33.57344 -31.71980 -31.61350 -28.65830 -27.23959 -26.08635 -25.80908 -24.61905 -23.47089 -22.07653 -21.04358 -19.60244 -19.27918 -18.33780 -17.86076 -17.23574 -16.49884 -16.10760 -15.72291 -15.63479 -15.43226 -14.93698 -14.87870 -14.60129 -14.22526 -13.93039 -13.75012 -13.48239 -13.28869 -13.07428 -12.98537 -12.85913 -12.71201 -12.46179 -12.25817 -12.15096 -11.79589 -11.68342 -11.61662 -11.17910 -11.04546 -10.68937 -10.59943 -10.43536 -10.33891 -9.98104 -9.84447 -9.57916 -9.33910 -8.59565 -8.19968 -8.13687 -6.31701 -3.83116 2.27100 2.45945 3.01816 3.06257 3.14384 3.53353 3.73669 4.01532 4.09798 4.20533 4.25662 4.41266 4.43350 4.51764 4.63981 4.71003 4.84831 4.91511 4.94591 5.03002 5.19152 5.20976 5.26418 5.27072 5.39138 5.43937 5.49311 5.53056 5.57994 5.61941 5.66001 5.80439 5.83789 5.92015 5.93164 6.01960 6.33094 6.57538 7.11058 7.15203 7.57387 7.59415 7.89655 8.14016 8.59339 8.94436 9.41942 9.82378 10.81430 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.027109 B = 0.001915 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.610774 B =14614.829812 C =15222.570774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.068 3.932 4 H 0.089 0.911 5 C -0.170 4.170 6 C 0.517 3.483 7 O -0.518 6.518 8 N -0.709 5.709 9 C 0.121 3.879 10 H 0.102 0.898 11 C -0.138 4.138 12 C -0.106 4.106 13 H 0.100 0.900 14 C 0.068 3.932 15 N -0.669 5.669 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.151 4.151 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.350 0.650 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.090 0.910 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 -16.602 -22.644 28.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.007 3.993 4 H 0.107 0.893 5 C -0.228 4.228 6 C 0.302 3.698 7 O -0.392 6.392 8 N -0.362 5.362 9 C 0.015 3.985 10 H 0.120 0.880 11 C -0.177 4.177 12 C -0.125 4.125 13 H 0.118 0.882 14 C -0.061 4.061 15 N -0.301 5.301 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.190 4.190 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.237 0.763 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.170 0.830 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.140 -16.975 -22.575 28.325 hybrid contribution 1.527 0.376 0.596 1.682 sum -0.613 -16.598 -21.978 27.549 Atomic orbital electron populations 1.22906 0.80393 1.03386 1.00189 1.88049 1.19840 1.25016 1.94937 1.21941 0.93462 0.87114 0.96794 0.89347 1.22229 1.03587 1.02024 0.94953 1.20399 0.86147 0.84054 0.79219 1.90729 1.68912 1.29786 1.49778 1.45595 1.21404 1.09387 1.59857 1.21821 0.83787 0.99966 0.92887 0.88021 1.23339 0.99660 0.95744 0.98967 1.22634 0.99487 0.94589 0.95756 0.88169 1.21957 0.94705 0.95187 0.94277 1.60073 1.23663 1.27937 1.18440 1.21706 0.94450 0.97087 0.95289 1.19733 0.88597 0.83994 0.84143 1.90561 1.14073 1.67294 1.72771 1.42211 1.08185 1.40862 1.31785 1.19434 0.95080 1.20007 1.08869 0.86298 1.25044 0.98456 0.96616 0.96095 1.69620 1.35811 1.27505 1.19206 0.86661 0.85273 0.78701 0.78676 1.19598 1.20189 1.19543 1.23540 1.03015 0.96065 0.96341 0.89047 0.93626 0.93753 0.90821 0.91026 0.91073 0.76322 0.90749 0.88642 0.95332 0.91008 0.83030 0.93854 0.89517 0.79693 0.91615 0.89189 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.36 -3.63 9.89 -55.09 -0.54 -4.17 16 3 C 0.07 0.53 3.13 -27.88 -0.09 0.44 16 4 H 0.09 0.50 7.79 -51.93 -0.40 0.09 16 5 C -0.17 -0.91 9.48 37.16 0.35 -0.55 16 6 C 0.52 5.38 7.18 -10.99 -0.08 5.30 16 7 O -0.52 -7.83 16.11 -14.30 -0.23 -8.06 16 8 N -0.71 -5.55 5.23 -53.01 -0.28 -5.83 16 9 C 0.12 1.02 4.32 -67.12 -0.29 0.73 16 10 H 0.10 1.01 7.46 -51.93 -0.39 0.63 16 11 C -0.14 -0.95 7.39 -25.92 -0.19 -1.14 16 12 C -0.11 -0.93 3.78 -89.80 -0.34 -1.27 16 13 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 14 C 0.07 0.73 5.52 -3.83 -0.02 0.71 16 15 N -0.67 -10.02 6.13 -115.06 -0.70 -10.72 16 16 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 17 C 0.45 10.20 7.82 -10.99 -0.09 10.11 16 18 O -0.57 -15.19 15.78 5.55 0.09 -15.10 16 19 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 20 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 21 H 0.12 3.85 7.39 -52.48 -0.39 3.47 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 24 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 28 C -0.15 -1.39 7.43 -25.92 -0.19 -1.58 16 29 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.05 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 32 H 0.07 0.26 7.93 -51.93 -0.41 -0.15 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.40 2.13 8.49 -40.82 -0.35 1.78 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.03 0.29 7.84 -51.93 -0.41 -0.12 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.35 5.55 8.43 -39.29 -0.33 5.22 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -36.39 383.69 -7.53 -43.92 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.53 Total: 11.71 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.12 Total: 6.98 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.26 Total: -55.67 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.69 Total: -27.34 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.39 -7.53 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485675752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.932 kcal (2) G-P(sol) polarization free energy of solvation -36.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds