Wall clock time and date at job start Fri Apr 10 2020 18:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00175 * 2 1 4 4 H 1.09001 * 109.46749 * 29.99937 * 3 2 1 5 5 C 1.53003 * 109.46746 * 270.00084 * 3 2 1 6 6 C 1.50699 * 109.47214 * 149.99666 * 3 2 1 7 7 O 1.21278 * 119.99997 * 5.00398 * 6 3 2 8 8 N 1.34776 * 119.99546 * 184.99549 * 6 3 2 9 9 C 1.46506 * 119.99649 * 179.97438 * 8 6 3 10 10 H 1.09007 * 112.84595 * 23.81259 * 9 8 6 11 11 C 1.53779 * 113.61276 * 155.00300 * 9 8 6 12 12 C 1.53787 * 87.07963 * 89.20243 * 11 9 8 13 13 H 1.08994 * 113.61447 * 270.88515 * 12 11 9 14 14 C 1.52997 * 113.61251 * 139.97890 * 12 11 9 15 15 N 1.46901 * 109.47093 * 175.00268 * 14 12 11 16 16 C 1.46905 * 111.00132 * 180.02562 * 15 14 12 17 17 C 1.50694 * 109.47059 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00145 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00013 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00148 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99809 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00228 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00075 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99742 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47354 * 89.99538 * 24 22 20 26 26 H 1.48498 * 109.46736 * 209.99460 * 24 22 20 27 27 H 1.48503 * 109.46930 * 329.99580 * 24 22 20 28 28 C 1.53779 * 113.69339 * 252.54233 * 9 8 6 29 29 H 1.09010 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47490 * 300.00182 * 1 2 3 31 31 H 1.09003 * 109.47184 * 60.00210 * 1 2 3 32 32 H 1.08999 * 109.46361 * 179.97438 * 5 3 2 33 33 H 1.08991 * 109.47195 * 299.99388 * 5 3 2 34 34 H 1.08992 * 109.47161 * 60.00163 * 5 3 2 35 35 H 0.96998 * 120.00727 * 0.02562 * 8 6 3 36 36 H 1.08997 * 113.61646 * 334.65874 * 11 9 8 37 37 H 1.08998 * 113.69354 * 203.76183 * 11 9 8 38 38 H 1.08998 * 109.47573 * 295.00161 * 14 12 11 39 39 H 1.09003 * 109.47157 * 55.00680 * 14 12 11 40 40 H 1.00897 * 111.00325 * 56.04538 * 15 14 12 41 41 H 1.08999 * 109.46737 * 299.99660 * 16 15 14 42 42 H 1.08997 * 109.46946 * 60.00069 * 16 15 14 43 43 H 0.96997 * 119.99911 * 0.02562 * 19 17 16 44 44 H 0.97005 * 120.00284 * 180.02562 * 23 22 20 45 45 H 1.09002 * 113.61557 * 156.32618 * 28 9 8 46 46 H 1.09004 * 113.61501 * 25.42039 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7713 -1.4426 6 6 3.3386 1.2639 0.7105 7 8 3.7896 0.2045 1.0914 8 7 4.0254 2.4040 0.9223 9 6 5.3165 2.3637 1.6135 10 1 5.8052 1.3921 1.5410 11 6 6.2384 3.5444 1.2659 12 6 5.5798 4.3000 2.4322 13 1 4.6906 4.8601 2.1430 14 6 6.5642 5.1304 3.2582 15 7 5.8270 5.9033 4.2668 16 6 6.7420 6.7151 5.0803 17 6 5.9515 7.4916 6.1016 18 8 4.7445 7.3801 6.1471 19 7 6.5855 8.3107 6.9639 20 6 5.8663 9.0175 7.8928 21 1 4.7917 8.9176 7.9337 22 6 6.5200 9.8616 8.7821 23 7 5.8306 10.5394 9.6720 24 14 8.3787 10.0338 8.7116 25 1 8.7389 11.1377 7.7858 26 1 8.8995 10.3364 10.0690 27 1 8.9753 8.7643 8.2241 28 6 5.2690 2.9241 3.0448 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.6606 2.7672 -1.4425 33 1 2.8829 1.0775 -1.9563 34 1 1.2569 1.8014 -1.9563 35 1 3.6645 3.2514 0.6179 36 1 6.0347 3.9849 0.2899 37 1 7.2964 3.3351 1.4233 38 1 7.2719 4.4667 3.7550 39 1 7.1047 5.8122 2.6017 40 1 5.2665 5.2980 4.8477 41 1 7.4512 6.0627 5.5897 42 1 7.2834 7.4078 4.4361 43 1 7.5506 8.4007 6.9268 44 1 6.2869 11.1290 10.2927 45 1 6.0617 2.5439 3.6891 46 1 4.2826 2.8637 3.5048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485675752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:01 Heat of formation + Delta-G solvation = -121.974549 kcal Electronic energy + Delta-G solvation = -25300.431903 eV Core-core repulsion = 21417.829758 eV Total energy + Delta-G solvation = -3882.602145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45349 -40.33620 -39.83426 -38.39446 -36.54915 -35.81789 -34.47626 -33.74123 -32.24392 -29.82110 -27.72085 -27.35724 -26.63060 -25.59155 -24.71017 -22.90892 -21.74276 -21.30505 -20.42409 -20.01854 -18.57000 -17.85533 -17.83208 -17.19933 -16.90272 -16.66211 -16.37700 -16.10644 -15.81162 -15.55452 -15.44483 -15.07481 -15.01120 -14.55205 -14.41581 -14.16434 -13.98489 -13.81255 -13.56277 -13.35379 -13.32781 -13.13689 -12.86738 -12.77382 -12.55898 -12.41280 -12.14248 -11.98324 -11.79958 -11.51411 -11.42663 -11.09087 -11.06593 -10.55548 -10.42793 -10.24940 -10.07933 -9.29002 -8.41366 -6.02414 1.30531 1.36186 1.45071 1.49424 1.82938 1.95872 2.23298 2.74858 2.98991 3.14932 3.40137 3.56455 3.63051 3.76142 3.89575 3.91003 3.98809 4.05624 4.18433 4.43502 4.43888 4.50969 4.52596 4.54025 4.66999 4.69588 4.78800 4.80502 4.83359 4.84503 4.89200 4.93053 5.08700 5.18320 5.20527 5.29735 5.52766 5.64317 5.91606 6.04156 6.10032 6.41896 6.51298 6.59944 6.88060 7.17984 7.39859 7.96640 8.76279 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.027109 B = 0.001915 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.610774 B =14614.829812 C =15222.570774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.067 3.933 4 H 0.112 0.888 5 C -0.164 4.164 6 C 0.511 3.489 7 O -0.575 6.575 8 N -0.695 5.695 9 C 0.116 3.884 10 H 0.085 0.915 11 C -0.117 4.117 12 C -0.101 4.101 13 H 0.095 0.905 14 C 0.070 3.930 15 N -0.687 5.687 16 C 0.061 3.939 17 C 0.447 3.553 18 O -0.616 6.616 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.231 1.231 28 C -0.154 4.154 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.417 0.583 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.341 0.659 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.092 0.908 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -16.302 -24.904 29.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.006 3.994 4 H 0.129 0.871 5 C -0.221 4.221 6 C 0.298 3.702 7 O -0.453 6.453 8 N -0.348 5.348 9 C 0.010 3.990 10 H 0.103 0.897 11 C -0.155 4.155 12 C -0.120 4.120 13 H 0.113 0.887 14 C -0.059 4.059 15 N -0.319 5.319 16 C -0.071 4.071 17 C 0.235 3.765 18 O -0.500 6.500 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.154 1.154 28 C -0.193 4.193 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.254 0.746 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.159 0.841 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.739 -16.650 -24.878 29.945 hybrid contribution 0.465 0.257 1.310 1.413 sum 1.204 -16.393 -23.569 28.734 Atomic orbital electron populations 1.23082 0.78696 1.04156 1.01426 1.88000 1.21862 1.26599 1.95209 1.22120 0.92168 0.86927 0.98216 0.87081 1.22219 1.04334 1.02566 0.93018 1.21031 0.86990 0.83678 0.78542 1.90696 1.70452 1.31837 1.52364 1.45517 1.20998 1.09502 1.58779 1.21827 0.84395 0.99987 0.92781 0.89718 1.23256 0.99770 0.93602 0.98892 1.22561 0.99296 0.93807 0.96307 0.88708 1.22073 0.94938 0.95415 0.93431 1.60107 1.24366 1.28782 1.18662 1.21642 0.93860 0.97449 0.94149 1.21071 0.88537 0.82865 0.84050 1.90540 1.16914 1.68534 1.74034 1.42040 1.08891 1.40974 1.31375 1.19011 0.92989 1.22403 1.11495 0.92757 1.26145 1.05586 0.95138 0.94639 1.69805 1.39023 1.28391 1.20297 0.85341 0.76209 0.80703 0.79104 1.18050 1.20091 1.15432 1.23560 1.02089 0.96915 0.96705 0.88688 0.93126 0.91676 0.88663 0.92564 0.89474 0.74584 0.88989 0.87255 0.94016 0.89577 0.84102 0.90828 0.86606 0.77435 0.91144 0.88981 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.40 -8.01 9.89 -129.99 -1.28 -9.30 16 3 C 0.07 0.98 3.13 29.85 0.09 1.07 16 4 H 0.11 1.06 7.79 -2.39 -0.02 1.05 16 5 C -0.16 -1.45 9.48 71.98 0.68 -0.77 16 6 C 0.51 10.64 7.18 87.66 0.63 11.27 16 7 O -0.58 -18.15 16.11 15.96 0.26 -17.90 16 8 N -0.69 -10.16 5.23 -440.03 -2.30 -12.46 16 9 C 0.12 1.84 4.32 45.52 0.20 2.03 16 10 H 0.08 1.69 7.46 -2.38 -0.02 1.67 16 11 C -0.12 -1.24 7.39 31.12 0.23 -1.01 16 12 C -0.10 -1.54 3.78 -10.27 -0.04 -1.57 16 13 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 14 C 0.07 1.25 5.52 86.30 0.48 1.73 16 15 N -0.69 -19.08 6.13 -517.94 -3.17 -22.25 16 16 C 0.06 1.81 6.17 85.55 0.53 2.33 16 17 C 0.45 20.04 7.82 87.66 0.69 20.72 16 18 O -0.62 -34.16 15.78 -3.07 -0.05 -34.21 16 19 N -0.59 -27.73 5.09 -306.98 -1.56 -29.29 16 20 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 21 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 22 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 23 N -0.93 -56.37 13.96 21.66 0.30 -56.07 16 24 Si 0.97 38.48 27.74 68.60 1.90 40.39 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 26 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 28 C -0.15 -2.71 7.43 31.12 0.23 -2.47 16 29 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.06 0.45 7.87 -2.39 -0.02 0.43 16 32 H 0.09 0.40 7.93 -2.39 -0.02 0.38 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.51 7.87 -2.39 -0.02 0.49 16 35 H 0.42 3.56 8.49 -92.71 -0.79 2.78 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.93 8.10 -2.39 -0.02 0.91 16 38 H 0.04 0.67 7.84 -2.39 -0.02 0.65 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.34 10.53 8.43 -89.70 -0.76 9.77 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.39 15.02 5.76 -92.71 -0.53 14.48 16 44 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 45 H 0.09 1.57 7.90 -2.39 -0.02 1.55 16 46 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -86.72 383.69 -0.78 -87.49 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -1.13 Total: 37.72 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.26 Total: 15.88 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -6.73 Total: -120.08 kcal Atomic # 8 Polarization: -60.32 SS G_CDS: -1.08 Total: -61.40 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.39 kcal Total: -86.72 -0.78 -87.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485675752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.481 kcal (2) G-P(sol) polarization free energy of solvation -86.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds