Wall clock time and date at job start Fri Apr 10 2020 18:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00082 * 2 1 4 4 C 1.52995 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.50711 * 109.46980 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99788 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99638 * 180.02562 * 5 4 3 8 8 C 1.47426 * 125.65171 * 359.97367 * 7 5 4 9 9 C 1.54912 * 104.83229 * 155.91153 * 8 7 5 10 10 C 1.55156 * 101.57907 * 37.01106 * 9 8 7 11 11 H 1.08993 * 110.72028 * 83.04206 * 10 9 8 12 12 N 1.46903 * 110.71850 * 206.13371 * 10 9 8 13 13 C 1.46896 * 110.99955 * 271.16036 * 12 10 9 14 14 C 1.50700 * 109.46942 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00282 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00075 * 179.97438 * 14 13 12 17 17 C 1.37104 * 120.00173 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99666 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00001 * 180.27893 * 17 16 14 20 20 N 1.31414 * 119.99893 * 359.72318 * 19 17 16 21 21 Si 1.86801 * 119.99957 * 179.72309 * 19 17 16 22 22 H 1.48494 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46780 * 119.99924 * 21 19 17 24 24 H 1.48495 * 109.46909 * 239.99525 * 21 19 17 25 25 C 1.47317 * 125.61259 * 180.20350 * 7 5 4 26 26 H 1.09004 * 110.06810 * 61.67615 * 25 7 5 27 27 C 1.52997 * 109.85142 * 300.41694 * 25 7 5 28 28 H 1.09006 * 109.47391 * 299.99793 * 1 2 3 29 29 H 1.09000 * 109.47758 * 59.99790 * 1 2 3 30 30 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47115 * 59.99898 * 3 2 1 32 32 H 1.09002 * 109.47176 * 300.00510 * 3 2 1 33 33 H 1.08997 * 109.46812 * 60.00562 * 4 3 2 34 34 H 1.08993 * 109.47268 * 299.99819 * 4 3 2 35 35 H 1.09000 * 110.36474 * 37.07029 * 8 7 5 36 36 H 1.09001 * 110.36760 * 274.74825 * 8 7 5 37 37 H 1.09003 * 111.00074 * 278.94093 * 9 8 7 38 38 H 1.09000 * 111.00393 * 155.08555 * 9 8 7 39 39 H 1.00907 * 111.00029 * 35.11549 * 12 10 9 40 40 H 1.08994 * 109.47346 * 60.00149 * 13 12 10 41 41 H 1.08998 * 109.47279 * 299.99821 * 13 12 10 42 42 H 0.97000 * 120.00140 * 0.02562 * 16 14 13 43 43 H 0.97004 * 119.99542 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.47014 * 302.39512 * 27 25 7 45 45 H 1.08996 * 109.47126 * 62.39669 * 27 25 7 46 46 H 1.08997 * 109.47598 * 182.39595 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1484 2.5614 0.0000 6 8 3.4354 3.5426 -0.0004 7 7 5.4887 2.7023 -0.0001 8 6 6.4685 1.6007 0.0009 9 6 7.7535 2.2123 -0.6108 10 6 7.7231 3.6493 -0.0265 11 1 8.1419 3.6654 0.9796 12 7 8.4447 4.5820 -0.9026 13 6 9.8692 4.6413 -0.5490 14 6 10.5750 5.6054 -1.4674 15 8 9.9527 6.1855 -2.3319 16 7 11.8978 5.8229 -1.3283 17 6 12.5399 6.7004 -2.1635 18 1 11.9856 7.2169 -2.9333 19 6 13.9047 6.9202 -2.0238 20 7 14.5790 6.2913 -1.0875 21 14 14.7809 8.1099 -3.1668 22 1 13.8044 8.6836 -4.1272 23 1 15.3922 9.2032 -2.3691 24 1 15.8428 7.3881 -3.9128 25 6 6.2167 3.9830 0.0036 26 1 5.9796 4.5454 0.9067 27 6 5.8396 4.7985 -1.2348 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8573 0.6436 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 6.1113 0.7748 -0.6143 36 1 6.6574 1.2619 1.0196 37 1 7.6971 2.2318 -1.6992 38 1 8.6401 1.6733 -0.2767 39 1 8.3230 4.3340 -1.8732 40 1 10.3112 3.6506 -0.6538 41 1 9.9738 4.9787 0.4822 42 1 12.3956 5.3587 -0.6372 43 1 15.5318 6.4451 -0.9898 44 1 6.0621 4.2208 -2.1319 45 1 4.7749 5.0304 -1.2067 46 1 6.4130 5.7254 -1.2480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486069359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:19 Heat of formation + Delta-G solvation = -111.904502 kcal Electronic energy + Delta-G solvation = -25937.209755 eV Core-core repulsion = 22055.044280 eV Total energy + Delta-G solvation = -3882.165475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56502 -38.74461 -38.14607 -37.62379 -34.78879 -33.82920 -32.43865 -31.26457 -31.11886 -30.35978 -27.07315 -26.62072 -25.27167 -24.38531 -23.60023 -22.76288 -20.36193 -19.35206 -19.03770 -17.97715 -17.68127 -16.75910 -16.36056 -16.22898 -16.06774 -15.49253 -15.20800 -15.10254 -14.72703 -14.53959 -14.05544 -13.72803 -13.66353 -13.58716 -13.07419 -12.89950 -12.78769 -12.41163 -12.28181 -12.21800 -12.16297 -11.81623 -11.58741 -11.54688 -11.51231 -11.42585 -11.07675 -10.88095 -10.80992 -10.35747 -10.24460 -10.05159 -9.94293 -9.54146 -8.84455 -8.50442 -8.10320 -7.98248 -6.44028 -3.84813 2.42280 2.57406 3.15032 3.25966 3.33215 3.46982 3.87724 4.00346 4.19833 4.26748 4.38546 4.55929 4.64914 4.75460 4.86067 4.97760 4.99877 5.00955 5.09801 5.12298 5.12806 5.23073 5.27582 5.30082 5.42224 5.45220 5.48805 5.57683 5.62804 5.75076 5.82646 5.84528 5.94912 6.12805 6.23634 6.39090 6.58436 6.73455 7.13017 7.31922 7.53546 7.55662 7.95519 8.04231 8.58597 9.15866 9.51777 10.02918 10.73682 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.047423 B = 0.002004 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.284387 B =13971.509665 C =14267.389796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.076 3.924 4 C -0.136 4.136 5 C 0.534 3.466 6 O -0.539 6.539 7 N -0.615 5.615 8 C 0.101 3.899 9 C -0.167 4.167 10 C 0.082 3.918 11 H 0.094 0.906 12 N -0.653 5.653 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.145 3.855 26 H 0.079 0.921 27 C -0.152 4.152 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.354 0.646 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.167 -15.231 5.626 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.001 4.001 4 C -0.176 4.176 5 C 0.322 3.678 6 O -0.416 6.416 7 N -0.350 5.350 8 C -0.022 4.022 9 C -0.207 4.207 10 C -0.030 4.030 11 H 0.112 0.888 12 N -0.285 5.285 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.467 6.467 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.122 0.878 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C 0.042 3.958 26 H 0.097 0.903 27 C -0.210 4.210 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.175 0.825 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.886 -13.889 5.440 24.858 hybrid contribution 1.128 -0.516 -0.362 1.292 sum -18.757 -14.405 5.079 24.190 Atomic orbital electron populations 1.22736 0.80534 1.02745 1.00278 1.87792 1.20124 1.28063 1.95588 1.22167 0.91872 0.84174 1.01872 1.21454 0.95356 0.95234 1.05511 1.19976 0.80635 0.90983 0.76197 1.90718 1.60024 1.40836 1.50042 1.48692 1.04748 1.08462 1.73113 1.22294 0.88768 0.90081 1.01100 1.23590 0.97441 0.98113 1.01566 1.22626 0.93277 0.89003 0.98108 0.88784 1.60058 1.09572 1.50873 1.08034 1.21711 0.88113 0.98162 1.00232 1.19790 0.83014 0.86954 0.87696 1.90534 1.65735 1.53003 1.37397 1.41867 1.06535 1.39652 1.31956 1.19760 0.91225 1.19241 1.12629 0.87846 1.25260 0.96594 0.98436 0.97643 1.69622 1.09186 1.42742 1.32740 0.85800 0.79134 0.79663 0.79759 1.19214 1.20732 1.20788 1.21582 0.90194 0.83937 1.00131 0.90344 1.21942 1.01983 1.01293 0.95821 0.93917 0.93897 0.89529 0.92339 0.92295 0.88137 0.88144 0.90468 0.90942 0.90151 0.89531 0.82464 0.93710 0.89477 0.77473 0.91926 0.93289 0.92168 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.66 10.70 -35.23 -0.38 -4.04 16 3 C 0.08 0.70 5.23 37.16 0.19 0.89 16 4 C -0.14 -1.13 5.08 -27.88 -0.14 -1.27 16 5 C 0.53 6.07 7.63 -10.98 -0.08 5.99 16 6 O -0.54 -8.06 14.89 5.56 0.08 -7.98 16 7 N -0.62 -6.40 3.09 -162.79 -0.50 -6.90 16 8 C 0.10 0.75 6.69 -2.53 -0.02 0.74 16 9 C -0.17 -1.45 6.67 -24.58 -0.16 -1.61 16 10 C 0.08 0.90 3.11 -65.88 -0.21 0.70 16 11 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 12 N -0.65 -9.62 4.44 -106.06 -0.47 -10.09 16 13 C 0.05 0.82 6.04 -4.98 -0.03 0.79 16 14 C 0.44 10.02 7.82 -10.98 -0.09 9.93 16 15 O -0.58 -15.43 15.78 5.55 0.09 -15.34 16 16 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 17 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 21 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.14 1.73 3.50 -66.79 -0.23 1.50 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 C -0.15 -2.09 8.22 37.16 0.31 -1.78 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.10 0.72 7.85 -51.93 -0.41 0.31 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.46 7.48 -51.93 -0.39 0.07 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.35 5.51 7.36 -39.29 -0.29 5.22 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 42 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.05 0.66 7.93 -51.93 -0.41 0.24 16 45 H 0.06 0.89 6.77 -51.93 -0.35 0.54 16 46 H 0.09 1.35 7.40 -51.93 -0.38 0.97 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -32.84 377.50 -6.96 -39.80 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -7.52 Total: 11.14 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 0.41 Total: 9.32 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.31 Total: -54.43 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.21 Total: -27.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.84 -6.96 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486069359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.106 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds