Wall clock time and date at job start Fri Apr 10 2020 18:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00293 * 2 1 4 4 C 1.50696 * 109.47296 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99859 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99466 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99229 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46749 * 180.02562 * 7 6 4 9 9 C 1.50702 * 109.46822 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00649 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99549 * 180.02562 * 9 8 7 12 12 C 1.47421 * 125.65022 * 359.96918 * 11 9 8 13 13 C 1.54907 * 104.83266 * 155.90930 * 12 11 9 14 14 C 1.55157 * 101.58315 * 37.01069 * 13 12 11 15 15 H 1.09006 * 110.72092 * 83.03177 * 14 13 12 16 16 N 1.46496 * 110.72451 * 206.13777 * 14 13 12 17 17 C 1.36945 * 119.99718 * 273.54503 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47022 * 125.64548 * 180.02562 * 11 9 8 26 26 H 1.08993 * 109.88613 * 61.60307 * 25 11 9 27 27 C 1.53005 * 109.88002 * 300.43215 * 25 11 9 28 28 H 1.08998 * 109.47770 * 300.00028 * 1 2 3 29 29 H 1.09003 * 109.46926 * 60.00161 * 1 2 3 30 30 H 1.09007 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46837 * 59.99564 * 3 2 1 32 32 H 1.08999 * 109.46621 * 300.00148 * 3 2 1 33 33 H 0.96995 * 120.00549 * 359.97438 * 6 4 3 34 34 H 1.08995 * 109.47335 * 60.00193 * 7 6 4 35 35 H 1.08999 * 109.47673 * 299.99701 * 7 6 4 36 36 H 1.08995 * 109.47239 * 59.99895 * 8 7 6 37 37 H 1.09007 * 109.46813 * 299.99543 * 8 7 6 38 38 H 1.09004 * 110.36554 * 37.07463 * 12 11 9 39 39 H 1.08999 * 110.37121 * 274.74666 * 12 11 9 40 40 H 1.08999 * 111.00650 * 278.93793 * 13 12 11 41 41 H 1.08997 * 111.00769 * 155.08432 * 13 12 11 42 42 H 0.96996 * 120.00499 * 93.54234 * 16 14 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.47376 * 302.19604 * 27 25 11 45 45 H 1.09004 * 109.46838 * 62.19960 * 27 25 11 46 46 H 1.08997 * 109.47235 * 182.18963 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2764 2.2968 0.0002 7 6 5.7368 2.1810 0.0003 8 6 6.3592 3.5788 0.0004 9 6 7.8615 3.4597 -0.0002 10 8 8.3831 2.3649 -0.0002 11 7 8.6254 4.5702 0.0003 12 6 8.1255 5.9570 0.0008 13 6 9.2770 6.7934 0.6125 14 6 10.5247 6.0810 0.0269 15 1 10.7381 6.4420 -0.9793 16 7 11.6860 6.2681 0.9000 17 6 12.4731 7.3804 0.7635 18 1 12.2378 8.1194 0.0119 19 6 13.5732 7.5580 1.5911 20 7 13.8602 6.6571 2.5068 21 14 14.6472 9.0750 1.4044 22 1 15.7479 9.0277 2.4000 23 1 15.2193 9.1109 0.0346 24 1 13.8277 10.2926 1.6307 25 6 10.0954 4.5989 -0.0007 26 1 10.4749 4.1196 -0.9030 27 6 10.6307 3.8792 1.2389 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8593 3.1725 -0.0009 34 1 6.0585 1.6398 -0.8895 35 1 6.0585 1.6405 0.8904 36 1 6.0375 4.1197 0.8903 37 1 6.0376 4.1198 -0.8897 38 1 7.2298 6.0372 0.6168 39 1 7.9174 6.2857 -1.0174 40 1 9.2679 6.7336 1.7008 41 1 9.2267 7.8300 0.2793 42 1 11.8975 5.6042 1.5748 43 1 14.6292 6.7811 3.0849 44 1 10.2306 4.3530 2.1352 45 1 10.3238 2.8335 1.2128 46 1 11.7190 3.9381 1.2516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486081453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:29 Heat of formation + Delta-G solvation = -93.655325 kcal Electronic energy + Delta-G solvation = -25832.300129 eV Core-core repulsion = 21950.925998 eV Total energy + Delta-G solvation = -3881.374131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30951 -39.87432 -37.96331 -37.57747 -35.34747 -34.23479 -32.11123 -31.23295 -30.71552 -29.33581 -28.55044 -26.38069 -25.26367 -24.28389 -23.21558 -22.29619 -21.10037 -19.63477 -18.65479 -17.71896 -17.51863 -17.28501 -16.80584 -16.77229 -16.15881 -15.61420 -15.34241 -15.07804 -14.81145 -14.67793 -14.24833 -13.83566 -13.52097 -13.38306 -13.32125 -12.96657 -12.65158 -12.50177 -12.18935 -12.04668 -11.92692 -11.84486 -11.67433 -11.55809 -11.24331 -10.99942 -10.84245 -10.49512 -10.28119 -10.27735 -10.14410 -10.03765 -9.77382 -9.55482 -9.40046 -8.97909 -8.46131 -7.05996 -5.84470 -3.14720 2.30488 2.36971 2.69801 3.12138 3.39239 3.44113 3.45320 3.66299 4.28159 4.51220 4.52413 4.58945 4.61522 4.65823 4.78326 4.84586 4.89488 4.96937 5.12093 5.21306 5.22502 5.32782 5.49801 5.53489 5.59213 5.64219 5.77052 5.77794 5.99793 6.04536 6.07341 6.18823 6.27378 6.49551 6.50955 6.53299 6.67117 6.79973 6.95264 7.11838 7.62527 7.69893 7.90261 8.26110 8.34066 9.45482 10.00385 10.35143 11.37787 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.046192 B = 0.001982 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.023688 B =14123.702818 C =14437.083088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.513 6.513 6 N -0.731 5.731 7 C 0.136 3.864 8 C -0.148 4.148 9 C 0.530 3.470 10 O -0.538 6.538 11 N -0.609 5.609 12 C 0.097 3.903 13 C -0.154 4.154 14 C 0.173 3.827 15 H 0.063 0.937 16 N -0.717 5.717 17 C -0.247 4.247 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.291 1.291 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.128 3.872 26 H 0.072 0.928 27 C -0.159 4.159 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.400 0.600 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.391 0.609 43 H 0.257 0.743 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.474 -3.645 -5.691 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.387 6.387 6 N -0.386 5.386 7 C 0.013 3.987 8 C -0.189 4.189 9 C 0.317 3.683 10 O -0.416 6.416 11 N -0.343 5.343 12 C -0.026 4.026 13 C -0.196 4.196 14 C 0.061 3.939 15 H 0.081 0.919 16 N -0.361 5.361 17 C -0.378 4.378 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.212 1.212 25 C 0.025 3.975 26 H 0.090 0.910 27 C -0.217 4.217 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.229 0.771 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.601 -5.160 -5.711 26.733 hybrid contribution 0.171 1.619 0.198 1.640 sum -25.430 -3.541 -5.513 26.260 Atomic orbital electron populations 1.22854 0.80236 1.03461 1.00144 1.88033 1.19884 1.25118 1.95419 1.22233 0.91561 0.87148 1.02680 1.20238 0.88655 0.84597 0.76964 1.90779 1.74541 1.26420 1.46951 1.45860 1.07299 1.08707 1.76732 1.21063 0.77497 0.95790 1.04391 1.21776 0.93428 0.98747 1.04933 1.19835 0.88265 0.83354 0.76855 1.90733 1.74790 1.25908 1.50137 1.48617 1.07616 1.05829 1.72221 1.22394 0.98189 0.81505 1.00525 1.23559 0.95436 0.99047 1.01512 1.21183 0.87819 0.89872 0.94997 0.91937 1.42679 1.27740 1.25792 1.39889 1.19185 1.05257 0.98547 1.14762 0.91119 1.24761 0.98864 0.98549 0.98452 1.69650 1.29770 1.35317 1.23072 0.86246 0.80090 0.82481 0.77187 1.21675 1.21199 1.21250 1.21837 0.78194 0.98393 0.99073 0.91020 1.22005 1.02455 1.00278 0.96971 0.93729 0.93756 0.88998 0.90132 0.90148 0.76630 0.90295 0.90258 0.88299 0.88364 0.91387 0.91594 0.90649 0.90585 0.77057 0.93292 0.92557 0.92065 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.58 10.24 -55.14 -0.56 -4.15 16 3 C 0.04 0.30 6.42 36.00 0.23 0.53 16 4 C 0.51 5.34 7.91 -10.99 -0.09 5.25 16 5 O -0.51 -8.26 16.50 -14.35 -0.24 -8.49 16 6 N -0.73 -5.60 5.56 -60.29 -0.33 -5.93 16 7 C 0.14 1.42 4.96 -4.04 -0.02 1.40 16 8 C -0.15 -1.29 4.82 -27.88 -0.13 -1.43 16 9 C 0.53 7.38 7.63 -10.98 -0.08 7.30 16 10 O -0.54 -9.67 14.89 5.56 0.08 -9.59 16 11 N -0.61 -8.60 3.08 -163.01 -0.50 -9.10 16 12 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16 13 C -0.15 -2.34 6.77 -24.58 -0.17 -2.51 16 14 C 0.17 3.20 3.46 -66.10 -0.23 2.97 16 15 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 16 N -0.72 -16.96 5.02 -51.65 -0.26 -17.22 16 17 C -0.25 -6.49 9.98 -15.06 -0.15 -6.64 16 18 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 21 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.13 2.20 3.48 -66.95 -0.23 1.97 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 C -0.16 -2.95 7.95 37.16 0.30 -2.66 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.40 1.45 8.47 -40.82 -0.35 1.10 16 34 H 0.08 0.99 8.10 -51.93 -0.42 0.56 16 35 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.10 0.67 7.85 -51.93 -0.41 0.26 16 37 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 38 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.39 9.84 4.92 -40.82 -0.20 9.64 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 45 H 0.06 1.15 6.77 -51.93 -0.35 0.80 16 46 H 0.08 1.63 6.67 -51.93 -0.35 1.29 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -35.99 377.90 -7.49 -43.48 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.50 Total: 7.06 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 0.42 Total: 8.17 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.37 Total: -58.79 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.72 Total: -22.23 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.99 -7.49 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486081453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.173 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds