Wall clock time and date at job start Fri Apr 10 2020 18:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00293 * 2 1 4 4 C 1.50696 * 109.47296 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99859 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99466 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99229 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46749 * 180.02562 * 7 6 4 9 9 C 1.50702 * 109.46822 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00649 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99549 * 180.02562 * 9 8 7 12 12 C 1.47421 * 125.65022 * 359.96918 * 11 9 8 13 13 C 1.54907 * 104.83266 * 155.90930 * 12 11 9 14 14 C 1.55157 * 101.58315 * 37.01069 * 13 12 11 15 15 H 1.09006 * 110.72092 * 83.03177 * 14 13 12 16 16 N 1.46496 * 110.72451 * 206.13777 * 14 13 12 17 17 C 1.36945 * 119.99718 * 273.54503 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47022 * 125.64548 * 180.02562 * 11 9 8 26 26 H 1.08993 * 109.88613 * 61.60307 * 25 11 9 27 27 C 1.53005 * 109.88002 * 300.43215 * 25 11 9 28 28 H 1.08998 * 109.47770 * 300.00028 * 1 2 3 29 29 H 1.09003 * 109.46926 * 60.00161 * 1 2 3 30 30 H 1.09007 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46837 * 59.99564 * 3 2 1 32 32 H 1.08999 * 109.46621 * 300.00148 * 3 2 1 33 33 H 0.96995 * 120.00549 * 359.97438 * 6 4 3 34 34 H 1.08995 * 109.47335 * 60.00193 * 7 6 4 35 35 H 1.08999 * 109.47673 * 299.99701 * 7 6 4 36 36 H 1.08995 * 109.47239 * 59.99895 * 8 7 6 37 37 H 1.09007 * 109.46813 * 299.99543 * 8 7 6 38 38 H 1.09004 * 110.36554 * 37.07463 * 12 11 9 39 39 H 1.08999 * 110.37121 * 274.74666 * 12 11 9 40 40 H 1.08999 * 111.00650 * 278.93793 * 13 12 11 41 41 H 1.08997 * 111.00769 * 155.08432 * 13 12 11 42 42 H 0.96996 * 120.00499 * 93.54234 * 16 14 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.47376 * 302.19604 * 27 25 11 45 45 H 1.09004 * 109.46838 * 62.19960 * 27 25 11 46 46 H 1.08997 * 109.47235 * 182.18963 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2764 2.2968 0.0002 7 6 5.7368 2.1810 0.0003 8 6 6.3592 3.5788 0.0004 9 6 7.8615 3.4597 -0.0002 10 8 8.3831 2.3649 -0.0002 11 7 8.6254 4.5702 0.0003 12 6 8.1255 5.9570 0.0008 13 6 9.2770 6.7934 0.6125 14 6 10.5247 6.0810 0.0269 15 1 10.7381 6.4420 -0.9793 16 7 11.6860 6.2681 0.9000 17 6 12.4731 7.3804 0.7635 18 1 12.2378 8.1194 0.0119 19 6 13.5732 7.5580 1.5911 20 7 13.8602 6.6571 2.5068 21 14 14.6472 9.0750 1.4044 22 1 15.7479 9.0277 2.4000 23 1 15.2193 9.1109 0.0346 24 1 13.8277 10.2926 1.6307 25 6 10.0954 4.5989 -0.0007 26 1 10.4749 4.1196 -0.9030 27 6 10.6307 3.8792 1.2389 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8593 3.1725 -0.0009 34 1 6.0585 1.6398 -0.8895 35 1 6.0585 1.6405 0.8904 36 1 6.0375 4.1197 0.8903 37 1 6.0376 4.1198 -0.8897 38 1 7.2298 6.0372 0.6168 39 1 7.9174 6.2857 -1.0174 40 1 9.2679 6.7336 1.7008 41 1 9.2267 7.8300 0.2793 42 1 11.8975 5.6042 1.5748 43 1 14.6292 6.7811 3.0849 44 1 10.2306 4.3530 2.1352 45 1 10.3238 2.8335 1.2128 46 1 11.7190 3.9381 1.2516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486081453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:28 Heat of formation + Delta-G solvation = -121.799461 kcal Electronic energy + Delta-G solvation = -25833.520551 eV Core-core repulsion = 21950.925998 eV Total energy + Delta-G solvation = -3882.594553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38652 -40.76976 -39.01690 -38.39674 -36.24342 -35.91363 -33.59201 -32.43834 -31.95643 -30.60123 -29.41735 -26.89083 -26.77039 -25.61978 -24.63554 -23.35998 -21.88215 -20.93340 -19.85603 -19.42187 -18.41694 -18.20070 -17.57032 -17.42974 -17.09697 -16.65025 -16.54874 -16.29874 -15.96637 -15.65921 -15.42021 -15.25150 -14.77544 -14.57122 -14.30128 -14.03248 -13.84343 -13.58310 -13.25219 -13.12703 -13.00779 -12.90798 -12.88185 -12.81785 -12.54014 -12.42673 -12.33115 -12.11372 -12.01164 -11.58465 -11.50492 -11.04114 -10.88797 -10.77418 -10.73962 -10.19960 -9.64180 -8.99508 -7.92410 -5.21488 1.50082 1.52791 1.54703 1.58681 1.62402 1.65215 2.14109 2.59133 3.14459 3.38516 3.51935 3.70119 3.81308 3.82401 3.92977 4.01834 4.07532 4.22418 4.23799 4.32160 4.39291 4.44846 4.49766 4.52579 4.59121 4.60772 4.67242 4.81674 4.85437 4.90144 4.90402 4.94229 5.08263 5.22588 5.29223 5.31693 5.35826 5.52674 5.57374 6.07096 6.28999 6.54008 6.62267 7.16344 7.24115 7.36269 8.10967 8.33618 9.31032 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.046192 B = 0.001982 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.023688 B =14123.702818 C =14437.083088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.047 3.953 4 C 0.502 3.498 5 O -0.583 6.583 6 N -0.707 5.707 7 C 0.141 3.859 8 C -0.129 4.129 9 C 0.521 3.479 10 O -0.589 6.589 11 N -0.608 5.608 12 C 0.105 3.895 13 C -0.146 4.146 14 C 0.163 3.837 15 H 0.066 0.934 16 N -0.734 5.734 17 C -0.238 4.238 18 H 0.082 0.918 19 C -0.077 4.077 20 N -0.972 5.972 21 Si 0.974 3.026 22 H -0.301 1.301 23 H -0.279 1.279 24 H -0.275 1.275 25 C 0.134 3.866 26 H 0.061 0.939 27 C -0.144 4.144 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.425 0.575 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.380 0.620 43 H 0.249 0.751 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.122 -0.781 -6.914 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.032 4.032 4 C 0.290 3.710 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.016 3.984 8 C -0.168 4.168 9 C 0.312 3.688 10 O -0.470 6.470 11 N -0.342 5.342 12 C -0.017 4.017 13 C -0.187 4.187 14 C 0.054 3.946 15 H 0.084 0.916 16 N -0.377 5.377 17 C -0.370 4.370 18 H 0.100 0.900 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.228 1.228 23 H -0.205 1.205 24 H -0.201 1.201 25 C 0.029 3.971 26 H 0.079 0.921 27 C -0.203 4.203 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.216 0.784 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.348 -2.198 -6.981 30.247 hybrid contribution 1.241 0.685 0.524 1.511 sum -28.107 -1.513 -6.457 28.879 Atomic orbital electron populations 1.23028 0.78178 1.04042 1.01814 1.87974 1.22254 1.27186 1.95844 1.22408 0.88216 0.86698 1.05852 1.21134 0.90598 0.83949 0.75363 1.90752 1.76015 1.29127 1.50309 1.45587 1.05933 1.09544 1.75204 1.20772 0.79259 0.96654 1.01684 1.21729 0.88646 0.97966 1.08464 1.20821 0.90395 0.82287 0.75347 1.90725 1.76123 1.27922 1.52207 1.48654 1.05954 1.07458 1.72116 1.22600 0.97686 0.78502 1.02901 1.23361 0.94924 1.00108 1.00312 1.21419 0.87640 0.91159 0.94426 0.91602 1.42877 1.29352 1.24969 1.40520 1.19624 1.04775 0.98910 1.13695 0.89974 1.25564 1.00810 1.01533 0.98992 1.69825 1.30370 1.37470 1.24576 0.85207 0.78114 0.79547 0.76839 1.22815 1.20536 1.20066 1.21531 0.80827 0.97205 0.97526 0.92093 1.21816 1.00707 1.00016 0.97744 0.92043 0.91961 0.89189 0.86780 0.86621 0.73619 0.93040 0.93441 0.84826 0.84248 0.87175 0.88404 0.92663 0.89318 0.78447 0.94190 0.93224 0.92768 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.55 10.24 -129.94 -1.33 -8.88 16 3 C 0.05 0.50 6.42 71.23 0.46 0.96 16 4 C 0.50 9.88 7.91 87.66 0.69 10.57 16 5 O -0.58 -19.46 16.50 16.00 0.26 -19.20 16 6 N -0.71 -8.88 5.56 -463.06 -2.57 -11.45 16 7 C 0.14 2.77 4.96 86.38 0.43 3.19 16 8 C -0.13 -1.71 4.82 29.85 0.14 -1.56 16 9 C 0.52 13.56 7.63 87.66 0.67 14.22 16 10 O -0.59 -21.54 14.89 -3.02 -0.04 -21.59 16 11 N -0.61 -15.71 3.08 -788.05 -2.43 -18.14 16 12 C 0.10 1.87 6.69 86.86 0.58 2.45 16 13 C -0.15 -4.03 6.77 31.99 0.22 -3.82 16 14 C 0.16 5.88 3.46 46.18 0.16 6.04 16 15 H 0.07 2.33 8.12 -2.38 -0.02 2.31 16 16 N -0.73 -35.19 5.02 -317.32 -1.59 -36.79 16 17 C -0.24 -12.55 9.98 84.03 0.84 -11.71 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 20 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 21 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.13 4.57 3.48 45.34 0.16 4.73 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 C -0.14 -5.62 7.95 71.98 0.57 -5.04 16 28 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.06 0.27 8.14 -2.39 -0.02 0.26 16 30 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.43 0.96 8.47 -92.71 -0.79 0.17 16 34 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 35 H 0.05 1.24 8.10 -2.39 -0.02 1.23 16 36 H 0.13 0.97 7.85 -2.39 -0.02 0.95 16 37 H 0.14 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.11 1.16 7.48 -2.38 -0.02 1.14 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 41 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.38 19.85 4.92 -92.71 -0.46 19.39 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 45 H 0.05 2.14 6.77 -2.38 -0.02 2.13 16 46 H 0.05 2.35 6.67 -2.39 -0.02 2.34 16 Total: -1.00 -86.42 377.90 0.98 -85.43 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.26 Total: 24.53 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 6.63 Total: 17.67 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -6.31 Total: -124.83 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -1.11 Total: -49.66 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -86.42 0.98 -85.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486081453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.366 kcal (2) G-P(sol) polarization free energy of solvation -86.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds