Wall clock time and date at job start Fri Apr 10 2020 18:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00392 * 2 1 4 4 C 1.50705 * 109.47593 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99667 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00158 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99922 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.50048 * 325.07518 * 7 6 4 9 9 C 1.53121 * 109.53403 * 85.17440 * 7 6 4 10 10 C 1.53124 * 109.15904 * 62.31088 * 9 7 6 11 11 C 1.53032 * 109.28179 * 57.65105 * 10 9 7 12 12 N 1.46844 * 109.52279 * 300.82012 * 11 10 9 13 13 C 1.46901 * 110.99901 * 185.83873 * 12 11 10 14 14 C 1.50694 * 109.47308 * 301.25330 * 13 12 11 15 15 O 1.21291 * 119.99820 * 354.38374 * 14 13 12 16 16 N 1.34775 * 119.99863 * 174.38743 * 14 13 12 17 17 C 1.37103 * 119.99956 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99889 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00232 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99799 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00174 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47200 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47389 * 119.99832 * 21 19 17 24 24 H 1.48502 * 109.47532 * 240.00296 * 21 19 17 25 25 C 1.46851 * 111.19829 * 61.74116 * 12 11 10 26 26 H 1.09002 * 109.45164 * 58.27289 * 25 12 11 27 27 C 1.53000 * 109.46020 * 178.24033 * 25 12 11 28 28 H 1.09000 * 109.46818 * 300.00045 * 1 2 3 29 29 H 1.09000 * 109.47037 * 59.99934 * 1 2 3 30 30 H 1.08998 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47241 * 60.00132 * 3 2 1 32 32 H 1.09000 * 109.47192 * 300.00175 * 3 2 1 33 33 H 0.97001 * 119.99869 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.52208 * 182.20817 * 9 7 6 35 35 H 1.08993 * 109.52736 * 302.33743 * 9 7 6 36 36 H 1.09004 * 109.49963 * 177.59276 * 10 9 7 37 37 H 1.08999 * 109.49974 * 297.70396 * 10 9 7 38 38 H 1.09003 * 109.46524 * 60.83826 * 11 10 9 39 39 H 1.08997 * 109.46291 * 180.80505 * 11 10 9 40 40 H 1.09000 * 109.47150 * 61.25538 * 13 12 11 41 41 H 1.09003 * 109.46938 * 181.25243 * 13 12 11 42 42 H 0.96992 * 120.00590 * 0.02562 * 16 14 13 43 43 H 0.96991 * 119.99645 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47074 * 173.68867 * 27 25 12 45 45 H 1.08996 * 109.47329 * 293.68733 * 27 25 12 46 46 H 1.08997 * 109.47414 * 53.69238 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0342 0.0914 0.0006 6 7 4.2766 2.2967 0.0013 7 6 5.7370 2.1810 0.0013 8 1 6.0331 1.3121 0.5891 9 6 6.2379 2.0203 -1.4367 10 6 5.8702 3.2711 -2.2397 11 6 6.4789 4.5021 -1.5644 12 7 5.9681 4.6120 -0.1921 13 6 6.4226 5.8574 0.4407 14 6 7.9290 5.8929 0.4549 15 8 8.5619 4.9293 0.0780 16 7 8.5730 6.9954 0.8864 17 6 9.9436 7.0276 0.8998 18 1 10.5072 6.1696 0.5642 19 6 10.6076 8.1644 1.3441 20 7 9.9218 9.2086 1.7520 21 14 12.4749 8.2085 1.3617 22 1 13.0054 6.9168 0.8564 23 1 12.9523 9.3133 0.4917 24 1 12.9519 8.4307 2.7504 25 6 6.3495 3.4436 0.6116 26 1 7.4355 3.3508 0.6245 27 6 5.8359 3.6193 2.0421 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8594 3.1724 0.0009 34 1 7.3207 1.8949 -1.4334 35 1 5.7713 1.1454 -1.8894 36 1 6.2616 3.1811 -3.2531 37 1 4.7857 3.3746 -2.2757 38 1 7.5643 4.4043 -1.5412 39 1 6.2069 5.3960 -2.1258 40 1 6.0443 6.7103 -0.1227 41 1 6.0484 5.9028 1.4635 42 1 8.0669 7.7659 1.1881 43 1 10.3853 10.0020 2.0625 44 1 6.0199 2.7065 2.6088 45 1 6.3564 4.4518 2.5153 46 1 4.7656 3.8244 2.0213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486167768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:47 Heat of formation + Delta-G solvation = -110.710479 kcal Electronic energy + Delta-G solvation = -27382.004767 eV Core-core repulsion = 23499.891069 eV Total energy + Delta-G solvation = -3882.113698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43119 -39.24889 -37.86765 -37.10591 -34.53069 -33.74128 -32.94568 -31.44307 -31.21217 -28.92707 -27.46502 -26.61379 -25.85977 -24.60450 -22.68601 -21.47473 -20.81214 -19.48544 -18.92268 -17.85700 -17.53949 -16.81382 -16.47592 -15.98540 -15.73697 -15.26910 -15.07508 -14.80272 -14.69178 -14.32399 -14.05148 -13.88347 -13.74114 -13.42628 -13.07579 -12.86628 -12.52013 -12.39267 -11.93535 -11.81875 -11.74493 -11.73750 -11.61261 -11.32889 -11.19796 -10.98399 -10.48436 -10.41373 -10.37076 -10.31933 -10.07685 -10.01232 -9.73731 -9.51538 -9.30076 -8.89325 -8.05380 -7.49169 -6.50930 -3.92230 2.63384 2.80535 3.09057 3.21221 3.27851 3.76530 3.92688 4.10218 4.23872 4.67281 4.82112 4.88868 4.90855 5.00167 5.02589 5.04014 5.08686 5.14568 5.22178 5.35213 5.35241 5.54180 5.69691 5.73222 5.83457 5.92376 5.95999 5.98362 6.09063 6.15022 6.17368 6.22580 6.32473 6.36836 6.51334 6.60500 6.71329 6.78717 7.29516 7.40589 7.46370 7.63005 7.95897 8.29203 8.49826 9.07807 9.43632 9.93685 10.65605 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.032371 B = 0.002741 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.774288 B =10211.276147 C =10413.813064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.509 3.491 5 O -0.529 6.529 6 N -0.706 5.706 7 C 0.162 3.838 8 H 0.087 0.913 9 C -0.131 4.131 10 C -0.108 4.108 11 C 0.035 3.965 12 N -0.510 5.510 13 C 0.037 3.963 14 C 0.407 3.593 15 O -0.594 6.594 16 N -0.556 5.556 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.024 3.976 20 N -0.898 5.898 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.057 3.943 26 H 0.097 0.903 27 C -0.144 4.144 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.407 0.593 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.393 0.607 43 H 0.272 0.728 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.055 -8.400 -2.977 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.294 3.706 5 O -0.404 6.404 6 N -0.360 5.360 7 C 0.057 3.943 8 H 0.105 0.895 9 C -0.170 4.170 10 C -0.146 4.146 11 C -0.093 4.093 12 N -0.234 5.234 13 C -0.095 4.095 14 C 0.192 3.808 15 O -0.481 6.481 16 N -0.191 5.191 17 C -0.431 4.431 18 H 0.121 0.879 19 C -0.178 4.178 20 N -0.539 5.539 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.051 4.051 26 H 0.115 0.885 27 C -0.201 4.201 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.243 0.757 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.591 -9.806 -3.175 19.532 hybrid contribution 1.050 1.468 0.265 1.825 sum -15.540 -8.338 -2.910 17.874 Atomic orbital electron populations 1.22827 0.80587 1.03190 1.00081 1.88018 1.19601 1.25444 1.95412 1.22264 0.92219 0.86755 1.02510 1.20207 0.88453 0.84929 0.76998 1.90718 1.74577 1.26627 1.48514 1.45883 1.06983 1.08603 1.74531 1.21039 0.78618 0.98109 0.96536 0.89502 1.21942 1.01521 0.98122 0.95373 1.21495 1.00600 0.94340 0.98207 1.22351 1.01246 0.97303 0.88353 1.62428 1.57414 1.01143 1.02411 1.22115 0.92737 0.93410 1.01202 1.21055 0.90057 0.84714 0.84942 1.90404 1.68354 1.35729 1.53597 1.42064 1.07425 1.14293 1.55311 1.19755 0.81524 1.01301 1.40552 0.87909 1.25290 1.00731 0.95051 0.96766 1.69613 1.36482 1.04653 1.43106 0.85815 0.82227 0.78493 0.77908 1.19230 1.20688 1.20671 1.22133 1.01413 0.89192 0.92403 0.88503 1.21856 1.01071 1.01853 0.95339 0.93843 0.93869 0.89211 0.90370 0.90375 0.75733 0.90866 0.91828 0.92030 0.92133 0.90322 0.91785 0.89450 0.88883 0.77414 0.91796 0.92519 0.92205 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.28 10.24 -55.14 -0.56 -4.84 16 3 C 0.04 0.40 6.42 36.01 0.23 0.63 16 4 C 0.51 6.56 7.87 -10.98 -0.09 6.48 16 5 O -0.53 -9.23 16.16 -14.35 -0.23 -9.47 16 6 N -0.71 -8.11 3.80 -53.73 -0.20 -8.32 16 7 C 0.16 2.21 2.26 -67.85 -0.15 2.05 16 8 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 9 C -0.13 -1.80 5.67 -26.60 -0.15 -1.95 16 10 C -0.11 -1.40 5.93 -26.65 -0.16 -1.55 16 11 C 0.04 0.53 4.98 -3.84 -0.02 0.51 16 12 N -0.51 -7.33 4.17 -228.13 -0.95 -8.28 16 13 C 0.04 0.59 5.47 -4.98 -0.03 0.56 16 14 C 0.41 8.70 7.18 -10.99 -0.08 8.63 16 15 O -0.59 -14.30 11.22 5.55 0.06 -14.24 16 16 N -0.56 -13.27 5.29 -10.96 -0.06 -13.33 16 17 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 18 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -23.70 13.05 55.50 0.72 -22.97 16 21 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 25 C 0.06 0.85 1.77 -67.72 -0.12 0.73 16 26 H 0.10 1.82 5.76 -51.93 -0.30 1.52 16 27 C -0.14 -1.90 8.28 37.16 0.31 -1.59 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.41 3.99 7.94 -40.82 -0.32 3.67 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.72 7.73 -51.93 -0.40 0.32 16 38 H 0.08 1.49 5.61 -51.93 -0.29 1.20 16 39 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.09 1.35 6.04 -51.93 -0.31 1.04 16 42 H 0.39 9.04 7.90 -40.82 -0.32 8.71 16 43 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.86 6.59 -51.93 -0.34 0.52 16 46 H 0.06 0.65 7.61 -51.93 -0.40 0.26 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -31.68 364.59 -7.38 -39.06 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.24 Total: 13.25 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 0.62 Total: 8.12 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.49 Total: -52.90 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.73 Total: -28.55 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.68 -7.38 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486167768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.654 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds