Wall clock time and date at job start Fri Apr 10 2020 18:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00292 * 2 1 4 4 H 1.08997 * 109.46952 * 329.99845 * 3 2 1 5 5 C 1.53001 * 109.46964 * 89.99761 * 3 2 1 6 6 C 1.50702 * 109.47333 * 209.99921 * 3 2 1 7 7 O 1.21281 * 119.99657 * 354.99959 * 6 3 2 8 8 N 1.34769 * 119.99880 * 174.99808 * 6 3 2 9 9 C 1.46500 * 119.99822 * 179.97438 * 8 6 3 10 10 C 1.53005 * 109.47410 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.46928 * 295.00371 * 10 9 8 12 12 N 1.46904 * 109.46931 * 54.99826 * 10 9 8 13 13 C 1.46890 * 111.00161 * 207.47026 * 12 10 9 14 14 C 1.50703 * 109.47510 * 180.23022 * 13 12 10 15 15 O 1.21300 * 119.99603 * 0.02562 * 14 13 12 16 16 N 1.34769 * 120.00402 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99910 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00244 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99810 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99830 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47282 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47341 * 120.00710 * 21 19 17 24 24 H 1.48510 * 109.46845 * 239.99994 * 21 19 17 25 25 C 1.52999 * 109.47371 * 175.00107 * 10 9 8 26 26 C 1.52994 * 117.49690 * 132.41263 * 25 10 9 27 27 C 1.52998 * 117.49781 * 63.75211 * 25 10 9 28 28 H 1.08999 * 109.47282 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46910 * 299.99867 * 1 2 3 30 30 H 1.08997 * 109.47214 * 59.99903 * 1 2 3 31 31 H 1.09005 * 109.46914 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47240 * 300.00147 * 5 3 2 33 33 H 1.09000 * 109.46988 * 60.00723 * 5 3 2 34 34 H 0.96998 * 120.00470 * 359.97438 * 8 6 3 35 35 H 1.09003 * 109.47535 * 299.99911 * 9 8 6 36 36 H 1.09005 * 109.47021 * 60.00378 * 9 8 6 37 37 H 1.00907 * 110.99800 * 83.51779 * 12 10 9 38 38 H 1.09001 * 109.47624 * 300.23334 * 13 12 10 39 39 H 1.09004 * 109.47079 * 60.23195 * 13 12 10 40 40 H 0.96997 * 120.00429 * 359.97438 * 16 14 13 41 41 H 0.97011 * 120.00097 * 179.97438 * 20 19 17 42 42 H 1.08999 * 115.54768 * 278.07863 * 25 10 9 43 43 H 1.08997 * 117.50414 * 359.97438 * 26 25 10 44 44 H 1.08999 * 117.50382 * 145.02380 * 26 25 10 45 45 H 1.09002 * 117.49600 * 214.98319 * 27 25 10 46 46 H 1.08997 * 117.50184 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2044 -1.0913 8 7 4.0254 2.4038 -0.9223 9 6 5.3171 2.3633 -1.6124 10 6 5.8810 3.7813 -1.7230 11 1 5.2321 4.3817 -2.3606 12 7 5.9499 4.3865 -0.3861 13 6 5.8442 5.8495 -0.4644 14 6 5.9243 6.4340 0.9223 15 8 6.0568 5.7035 1.8816 16 7 5.8486 7.7682 1.0967 17 6 5.9220 8.2999 2.3583 18 1 6.0400 7.6495 3.2124 19 6 5.8445 9.6755 2.5380 20 7 5.7004 10.4668 1.4989 21 14 5.9452 10.3999 4.2569 22 1 6.1062 9.3049 5.2470 23 1 7.1101 11.3172 4.3401 24 1 4.6997 11.1539 4.5500 25 6 7.2840 3.7263 -2.3308 26 6 7.5988 4.6976 -3.4702 27 6 7.4131 3.2068 -3.7640 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.6606 2.7672 1.4425 32 1 1.2569 1.8014 1.9563 33 1 2.8829 1.0774 1.9563 34 1 3.6646 3.2512 -0.6180 35 1 6.0107 1.7390 -1.0491 36 1 5.1826 1.9474 -2.6110 37 1 6.7938 4.1100 0.0929 38 1 6.6607 6.2409 -1.0713 39 1 4.8913 6.1212 -0.9187 40 1 5.7430 8.3524 0.3297 41 1 5.6459 11.4272 1.6244 42 1 8.0888 3.4890 -1.6350 43 1 6.8063 5.3754 -3.7872 44 1 8.6108 5.0989 -3.5245 45 1 8.3030 2.6279 -4.0113 46 1 6.4986 2.9038 -4.2738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490637742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:04 Heat of formation + Delta-G solvation = -94.559697 kcal Electronic energy + Delta-G solvation = -26293.141345 eV Core-core repulsion = 22411.727997 eV Total energy + Delta-G solvation = -3881.413348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01776 -38.90770 -37.94793 -37.49678 -35.13396 -34.16113 -33.57522 -31.78517 -31.25764 -29.18063 -26.97197 -26.25002 -24.59365 -23.69692 -22.82930 -22.33645 -20.76934 -20.11459 -19.27786 -17.95818 -17.47633 -17.10171 -16.44604 -15.96575 -15.58623 -15.49416 -15.12055 -14.90144 -14.64551 -14.46445 -14.18008 -14.03782 -13.69222 -13.39249 -13.28443 -12.78438 -12.55589 -12.46688 -12.28644 -11.99458 -11.93125 -11.73311 -11.57274 -11.54397 -11.36950 -11.27068 -11.10168 -10.65251 -10.38169 -10.28202 -10.20883 -10.11976 -9.56637 -9.49920 -8.96153 -8.54425 -8.16008 -8.01095 -6.46641 -3.87475 2.65544 2.86835 3.12694 3.23892 3.30826 3.59139 3.85445 3.88947 4.00233 4.23540 4.49356 4.67268 4.71475 4.81151 4.84513 4.88653 5.04244 5.07388 5.10732 5.16266 5.17888 5.23368 5.35375 5.43718 5.47881 5.56354 5.60672 5.66219 5.73280 5.76151 5.83846 5.94027 5.95384 6.01593 6.07735 6.21388 6.47941 6.86274 7.08659 7.50846 7.53201 7.61343 8.01497 8.29532 8.55856 9.13288 9.49269 10.00289 10.71012 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003307 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.819721 B = 8464.995806 C =10700.002237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.071 3.929 4 H 0.084 0.916 5 C -0.171 4.171 6 C 0.513 3.487 7 O -0.532 6.532 8 N -0.710 5.710 9 C 0.139 3.861 10 C 0.104 3.896 11 H 0.083 0.917 12 N -0.658 5.658 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.182 4.182 26 C -0.174 4.174 27 C -0.174 4.174 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.409 0.591 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.355 0.645 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.334 -12.011 -10.170 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.009 3.991 4 H 0.102 0.898 5 C -0.229 4.229 6 C 0.298 3.702 7 O -0.408 6.408 8 N -0.363 5.363 9 C 0.015 3.985 10 C -0.007 4.007 11 H 0.102 0.898 12 N -0.290 5.290 13 C -0.083 4.083 14 C 0.225 3.775 15 O -0.467 6.467 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.755 3.245 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.202 4.202 26 C -0.211 4.211 27 C -0.212 4.212 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.175 0.825 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.497 -13.315 -9.642 17.334 hybrid contribution 0.550 1.850 0.130 1.934 sum -4.947 -11.466 -9.512 15.698 Atomic orbital electron populations 1.22864 0.80837 1.03047 1.00040 1.88037 1.19466 1.25476 1.94978 1.21940 0.93490 0.86493 0.97155 0.89803 1.22235 1.03289 1.02872 0.94489 1.20322 0.86274 0.84119 0.79492 1.90696 1.69621 1.29861 1.50587 1.45713 1.21324 1.09669 1.59603 1.21231 0.84352 0.96085 0.96831 1.21454 0.93452 0.95039 0.90736 0.89850 1.60253 1.46181 1.07592 1.14979 1.21722 1.01525 0.88168 0.96879 1.19806 0.84655 0.83143 0.89899 1.90540 1.54935 1.59392 1.41831 1.41868 1.63634 1.04979 1.09488 1.19745 1.46871 0.90776 0.85463 0.87872 1.25258 0.97272 0.96057 0.99320 1.69617 1.50075 1.04750 1.29822 0.85817 0.77759 0.78971 0.81907 1.19195 1.20770 1.20722 1.23113 0.99128 1.05849 0.92137 1.23014 1.03002 0.92727 1.02399 1.22911 1.03354 0.96851 0.98072 0.89310 0.93769 0.93960 0.90021 0.91434 0.91075 0.75542 0.91362 0.91357 0.82487 0.93434 0.89796 0.77503 0.91907 0.87357 0.88642 0.88735 0.88788 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.68 9.88 -55.09 -0.54 -5.22 16 3 C 0.07 0.81 3.13 -27.88 -0.09 0.73 16 4 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 5 C -0.17 -1.86 9.48 37.16 0.35 -1.50 16 6 C 0.51 7.19 7.18 -10.99 -0.08 7.11 16 7 O -0.53 -9.57 16.51 -14.30 -0.24 -9.81 16 8 N -0.71 -8.54 5.35 -60.29 -0.32 -8.87 16 9 C 0.14 1.62 5.19 -4.04 -0.02 1.59 16 10 C 0.10 1.12 2.35 -67.71 -0.16 0.96 16 11 H 0.08 0.84 7.55 -51.93 -0.39 0.45 16 12 N -0.66 -9.14 5.33 -107.99 -0.58 -9.71 16 13 C 0.05 0.77 5.96 -4.98 -0.03 0.75 16 14 C 0.44 9.66 7.82 -10.99 -0.09 9.58 16 15 O -0.58 -14.94 15.77 5.54 0.09 -14.85 16 16 N -0.56 -13.58 5.29 -10.96 -0.06 -13.64 16 17 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 21 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.18 -1.80 5.11 -90.62 -0.46 -2.27 16 26 C -0.17 -1.60 10.18 -26.70 -0.27 -1.88 16 27 C -0.17 -1.49 9.86 -26.69 -0.26 -1.76 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.31 7.87 -51.93 -0.41 -0.09 16 30 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 32 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.41 4.57 7.92 -40.82 -0.32 4.25 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.76 7.72 -51.93 -0.40 0.36 16 37 H 0.35 5.40 8.01 -39.29 -0.31 5.09 16 38 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.08 1.17 8.06 -51.93 -0.42 0.76 16 40 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 41 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.11 1.13 7.95 -51.93 -0.41 0.72 16 43 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 0.77 7.90 -51.93 -0.41 0.36 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -32.94 389.21 -7.85 -40.79 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -7.51 Total: 16.11 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -0.26 Total: 6.93 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.23 Total: -55.36 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.69 Total: -29.88 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.94 -7.85 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490637742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.765 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds