Wall clock time and date at job start Fri Apr 10 2020 18:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00292 * 2 1 4 4 H 1.08997 * 109.46952 * 329.99845 * 3 2 1 5 5 C 1.53001 * 109.46964 * 89.99761 * 3 2 1 6 6 C 1.50702 * 109.47333 * 209.99921 * 3 2 1 7 7 O 1.21281 * 119.99657 * 354.99959 * 6 3 2 8 8 N 1.34769 * 119.99880 * 174.99808 * 6 3 2 9 9 C 1.46500 * 119.99822 * 179.97438 * 8 6 3 10 10 C 1.53005 * 109.47410 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.46928 * 295.00371 * 10 9 8 12 12 N 1.46904 * 109.46931 * 54.99826 * 10 9 8 13 13 C 1.46890 * 111.00161 * 207.47026 * 12 10 9 14 14 C 1.50703 * 109.47510 * 180.23022 * 13 12 10 15 15 O 1.21300 * 119.99603 * 0.02562 * 14 13 12 16 16 N 1.34769 * 120.00402 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99910 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00244 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99810 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99830 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47282 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47341 * 120.00710 * 21 19 17 24 24 H 1.48510 * 109.46845 * 239.99994 * 21 19 17 25 25 C 1.52999 * 109.47371 * 175.00107 * 10 9 8 26 26 C 1.52994 * 117.49690 * 132.41263 * 25 10 9 27 27 C 1.52998 * 117.49781 * 63.75211 * 25 10 9 28 28 H 1.08999 * 109.47282 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46910 * 299.99867 * 1 2 3 30 30 H 1.08997 * 109.47214 * 59.99903 * 1 2 3 31 31 H 1.09005 * 109.46914 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47240 * 300.00147 * 5 3 2 33 33 H 1.09000 * 109.46988 * 60.00723 * 5 3 2 34 34 H 0.96998 * 120.00470 * 359.97438 * 8 6 3 35 35 H 1.09003 * 109.47535 * 299.99911 * 9 8 6 36 36 H 1.09005 * 109.47021 * 60.00378 * 9 8 6 37 37 H 1.00907 * 110.99800 * 83.51779 * 12 10 9 38 38 H 1.09001 * 109.47624 * 300.23334 * 13 12 10 39 39 H 1.09004 * 109.47079 * 60.23195 * 13 12 10 40 40 H 0.96997 * 120.00429 * 359.97438 * 16 14 13 41 41 H 0.97011 * 120.00097 * 179.97438 * 20 19 17 42 42 H 1.08999 * 115.54768 * 278.07863 * 25 10 9 43 43 H 1.08997 * 117.50414 * 359.97438 * 26 25 10 44 44 H 1.08999 * 117.50382 * 145.02380 * 26 25 10 45 45 H 1.09002 * 117.49600 * 214.98319 * 27 25 10 46 46 H 1.08997 * 117.50184 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2044 -1.0913 8 7 4.0254 2.4038 -0.9223 9 6 5.3171 2.3633 -1.6124 10 6 5.8810 3.7813 -1.7230 11 1 5.2321 4.3817 -2.3606 12 7 5.9499 4.3865 -0.3861 13 6 5.8442 5.8495 -0.4644 14 6 5.9243 6.4340 0.9223 15 8 6.0568 5.7035 1.8816 16 7 5.8486 7.7682 1.0967 17 6 5.9220 8.2999 2.3583 18 1 6.0400 7.6495 3.2124 19 6 5.8445 9.6755 2.5380 20 7 5.7004 10.4668 1.4989 21 14 5.9452 10.3999 4.2569 22 1 6.1062 9.3049 5.2470 23 1 7.1101 11.3172 4.3401 24 1 4.6997 11.1539 4.5500 25 6 7.2840 3.7263 -2.3308 26 6 7.5988 4.6976 -3.4702 27 6 7.4131 3.2068 -3.7640 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.6606 2.7672 1.4425 32 1 1.2569 1.8014 1.9563 33 1 2.8829 1.0774 1.9563 34 1 3.6646 3.2512 -0.6180 35 1 6.0107 1.7390 -1.0491 36 1 5.1826 1.9474 -2.6110 37 1 6.7938 4.1100 0.0929 38 1 6.6607 6.2409 -1.0713 39 1 4.8913 6.1212 -0.9187 40 1 5.7430 8.3524 0.3297 41 1 5.6459 11.4272 1.6244 42 1 8.0888 3.4890 -1.6350 43 1 6.8063 5.3754 -3.7872 44 1 8.6108 5.0989 -3.5245 45 1 8.3030 2.6279 -4.0113 46 1 6.4986 2.9038 -4.2738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490637742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:03 Heat of formation + Delta-G solvation = -119.412649 kcal Electronic energy + Delta-G solvation = -26294.219050 eV Core-core repulsion = 22411.727997 eV Total energy + Delta-G solvation = -3882.491053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05824 -40.23198 -39.27501 -38.43716 -36.22057 -35.86081 -34.88259 -33.22853 -32.68175 -30.28581 -27.78428 -27.66089 -25.94923 -24.91853 -23.68976 -23.07545 -21.73174 -21.18250 -20.87715 -19.87238 -18.49233 -18.07129 -17.68884 -17.03159 -16.83715 -16.64212 -16.35556 -16.09943 -15.82163 -15.74488 -15.61129 -15.13655 -14.79958 -14.73520 -14.27174 -13.94699 -13.69913 -13.55083 -13.43058 -13.30278 -13.13374 -12.94901 -12.75465 -12.67873 -12.42669 -12.37493 -12.20327 -12.11046 -12.08948 -11.48531 -11.40106 -11.07970 -10.95392 -10.50017 -10.29409 -10.01605 -9.97668 -9.33126 -8.44561 -5.92273 1.37634 1.43574 1.56776 1.58475 1.95190 2.10234 2.30325 2.81113 2.93389 3.06782 3.23739 3.53900 3.65472 3.81014 3.93869 3.95758 4.04137 4.07848 4.17924 4.34534 4.37951 4.47613 4.49237 4.55784 4.59239 4.63861 4.67901 4.74455 4.79181 4.84454 4.86255 4.92880 5.05737 5.19940 5.21821 5.28522 5.44051 5.46881 5.90193 6.08168 6.11568 6.34264 6.61383 6.63585 7.16464 7.25789 7.61089 8.16496 8.72884 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003307 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.819721 B = 8464.995806 C =10700.002237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.395 6.395 3 C 0.073 3.927 4 H 0.115 0.885 5 C -0.165 4.165 6 C 0.507 3.493 7 O -0.579 6.579 8 N -0.700 5.700 9 C 0.141 3.859 10 C 0.117 3.883 11 H 0.100 0.900 12 N -0.666 5.666 13 C 0.067 3.933 14 C 0.440 3.560 15 O -0.622 6.622 16 N -0.574 5.574 17 C -0.329 4.329 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.988 3.012 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.271 1.271 25 C -0.194 4.194 26 C -0.173 4.173 27 C -0.164 4.164 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.415 0.585 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.346 0.654 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.396 0.604 41 H 0.276 0.724 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 -11.210 -11.243 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.012 3.988 4 H 0.133 0.867 5 C -0.223 4.223 6 C 0.293 3.707 7 O -0.459 6.459 8 N -0.352 5.352 9 C 0.017 3.983 10 C 0.007 3.993 11 H 0.118 0.882 12 N -0.297 5.297 13 C -0.065 4.065 14 C 0.227 3.773 15 O -0.508 6.508 16 N -0.211 5.211 17 C -0.459 4.459 18 H 0.096 0.904 19 C -0.211 4.211 20 N -0.561 5.561 21 Si 0.812 3.188 22 H -0.199 1.199 23 H -0.199 1.199 24 H -0.196 1.196 25 C -0.215 4.215 26 C -0.210 4.210 27 C -0.201 4.201 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.252 0.748 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.165 0.835 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.230 0.770 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.446 -12.482 -10.745 17.686 hybrid contribution 0.843 1.529 0.437 1.800 sum -5.604 -10.953 -10.308 16.051 Atomic orbital electron populations 1.23096 0.78720 1.04200 1.01420 1.87998 1.21899 1.26324 1.95159 1.21999 0.92638 0.86909 0.97260 0.86718 1.22191 1.03890 1.02002 0.94236 1.20890 0.87127 0.83697 0.78941 1.90666 1.70937 1.31485 1.52763 1.45707 1.21174 1.09518 1.58828 1.21245 0.83826 0.96406 0.96855 1.21377 0.94356 0.94251 0.89306 0.88160 1.60228 1.45886 1.06599 1.16967 1.21570 1.03558 0.88824 0.92546 1.20906 0.82065 0.82222 0.92076 1.90516 1.56030 1.60165 1.44139 1.41924 1.64545 1.05933 1.08722 1.19660 1.48874 0.91238 0.86147 0.90439 1.25958 0.96495 0.95904 1.02788 1.69668 1.50100 1.05139 1.31208 0.84939 0.78238 0.77976 0.77618 1.19879 1.19873 1.19649 1.22996 0.98180 1.07539 0.92739 1.23083 1.03344 0.93125 1.01426 1.22978 1.04034 0.96602 0.96508 0.88442 0.92296 0.92570 0.90205 0.89424 0.93126 0.74815 0.93185 0.90489 0.83517 0.91602 0.87210 0.76991 0.91407 0.88249 0.87926 0.88648 0.88186 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.55 16 2 O -0.40 -9.92 9.88 -129.99 -1.28 -11.20 16 3 C 0.07 1.60 3.13 29.85 0.09 1.69 16 4 H 0.12 1.76 7.79 -2.39 -0.02 1.74 16 5 C -0.17 -3.45 9.48 71.98 0.68 -2.77 16 6 C 0.51 14.06 7.18 87.66 0.63 14.69 16 7 O -0.58 -21.18 16.51 15.96 0.26 -20.92 16 8 N -0.70 -16.19 5.35 -463.05 -2.48 -18.67 16 9 C 0.14 3.14 5.19 86.38 0.45 3.59 16 10 C 0.12 2.31 2.35 44.92 0.11 2.41 16 11 H 0.10 1.69 7.55 -2.39 -0.02 1.68 16 12 N -0.67 -17.68 5.33 -495.57 -2.64 -20.32 16 13 C 0.07 1.97 5.96 85.56 0.51 2.48 16 14 C 0.44 19.23 7.82 87.66 0.69 19.92 16 15 O -0.62 -32.38 15.77 -3.09 -0.05 -32.42 16 16 N -0.57 -27.73 5.29 -306.98 -1.62 -29.35 16 17 C -0.33 -18.03 9.68 84.04 0.81 -17.22 16 18 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -48.10 13.05 21.66 0.28 -47.81 16 21 Si 0.99 41.89 29.55 68.60 2.03 43.92 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 C -0.19 -3.53 5.11 -10.80 -0.06 -3.59 16 26 C -0.17 -2.76 10.18 30.62 0.31 -2.45 16 27 C -0.16 -2.44 9.86 30.62 0.30 -2.14 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 0.71 7.87 -2.39 -0.02 0.69 16 30 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.08 1.68 7.93 -2.38 -0.02 1.66 16 32 H 0.09 1.45 7.87 -2.39 -0.02 1.43 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.41 8.61 7.92 -92.71 -0.73 7.88 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.62 7.72 -2.38 -0.02 1.60 16 37 H 0.35 10.45 8.01 -89.69 -0.72 9.73 16 38 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 39 H 0.11 2.72 8.06 -2.39 -0.02 2.70 16 40 H 0.40 18.14 7.90 -92.71 -0.73 17.41 16 41 H 0.28 13.55 8.31 -92.70 -0.77 12.78 16 42 H 0.10 2.01 7.95 -2.39 -0.02 1.99 16 43 H 0.10 1.51 8.07 -2.39 -0.02 1.49 16 44 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.10 1.40 7.90 -2.39 -0.02 1.38 16 Total: -1.00 -72.41 389.21 -0.46 -72.87 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: -1.18 Total: 45.89 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.22 Total: 18.02 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -6.46 Total: -116.15 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -1.07 Total: -64.55 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -72.41 -0.46 -72.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490637742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.545 kcal (2) G-P(sol) polarization free energy of solvation -72.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds