Wall clock time and date at job start Fri Apr 10 2020 18:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46505 * 109.47578 * 174.99814 * 4 2 1 6 6 C 1.34776 * 120.00162 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99923 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99815 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46801 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.27486 * 54.30286 * 9 8 6 11 11 C 1.54943 * 110.30576 * 176.38895 * 9 8 6 12 12 C 1.55415 * 100.89066 * 155.29057 * 11 9 8 13 13 C 1.54379 * 102.31153 * 325.99128 * 12 11 9 14 14 O 1.43241 * 107.58917 * 21.28513 * 13 12 11 15 15 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 16 16 C 1.46897 * 111.00172 * 84.99810 * 15 2 1 17 17 C 1.50697 * 109.46908 * 180.02562 * 16 15 2 18 18 O 1.21287 * 120.00522 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00145 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00073 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99993 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00207 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47082 * 59.99970 * 24 22 20 26 26 H 1.48501 * 109.47084 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47395 * 300.00429 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 33 33 H 0.96998 * 119.99536 * 0.02562 * 5 4 2 34 34 H 1.08991 * 109.46751 * 299.99574 * 8 6 5 35 35 H 1.09002 * 109.47083 * 60.00009 * 8 6 5 36 36 H 1.09005 * 111.12409 * 273.27858 * 11 9 8 37 37 H 1.09001 * 111.13104 * 37.44392 * 11 9 8 38 38 H 1.09001 * 110.88275 * 207.74967 * 12 11 9 39 39 H 1.08998 * 110.93498 * 84.25153 * 12 11 9 40 40 H 1.09005 * 109.83112 * 261.77518 * 13 12 11 41 41 H 1.08995 * 109.83372 * 140.80375 * 13 12 11 42 42 H 1.00899 * 110.99467 * 321.04346 * 15 2 1 43 43 H 1.09005 * 109.47066 * 299.99968 * 16 15 2 44 44 H 1.09001 * 109.47085 * 59.99954 * 16 15 2 45 45 H 0.97005 * 119.99644 * 359.97438 * 19 17 16 46 46 H 0.97000 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4292 2.1905 7 8 3.5700 -1.8842 3.1393 8 6 5.6751 -1.5369 2.1304 9 6 6.1851 -2.2583 3.3796 10 1 5.6826 -3.2190 3.4925 11 6 7.7190 -2.4602 3.2953 12 6 8.0843 -2.5665 4.8021 13 6 7.0696 -1.6039 5.4556 14 8 5.9750 -1.4457 4.5453 15 7 2.0197 -0.6924 -1.1995 16 6 2.0825 0.2227 -2.3469 17 6 2.5874 -0.5216 -3.5560 18 8 2.8678 -1.6985 -3.4703 19 7 2.7283 0.1207 -4.7325 20 6 3.1881 -0.5563 -5.8324 21 1 3.4379 -1.6043 -5.7561 22 6 3.3329 0.1058 -7.0454 23 7 3.0286 1.3808 -7.1385 24 14 3.9601 -0.8164 -8.5439 25 1 3.0392 -1.9389 -8.8556 26 1 4.0228 0.1085 -9.7040 27 1 5.3165 -1.3523 -8.2635 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2950 33 1 3.9825 -0.4622 0.4318 34 1 5.9637 -2.0991 1.2424 35 1 6.1094 -0.5381 2.0852 36 1 7.9656 -3.3795 2.7639 37 1 8.2038 -1.5999 2.8340 38 1 9.1064 -2.2312 4.9787 39 1 7.9435 -3.5842 5.1662 40 1 7.5409 -0.6382 5.6386 41 1 6.7116 -2.0258 6.3947 42 1 1.4496 -1.4978 -1.4101 43 1 1.0870 0.6164 -2.5525 44 1 2.7588 1.0463 -2.1182 45 1 2.5044 1.0621 -4.8010 46 1 3.1300 1.8431 -7.9852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491402360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:38 Heat of formation + Delta-G solvation = -130.126774 kcal Electronic energy + Delta-G solvation = -25755.414203 eV Core-core repulsion = 21872.458551 eV Total energy + Delta-G solvation = -3882.955652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.06603 -39.01322 -38.37610 -36.86375 -34.10323 -33.67527 -32.56326 -31.91652 -31.30655 -30.62300 -27.48989 -26.39722 -25.48779 -23.92479 -22.10170 -21.59050 -20.96995 -19.98697 -19.32034 -17.94850 -17.30569 -16.73674 -16.47210 -15.95057 -15.77265 -15.50030 -15.10414 -14.93003 -14.58586 -14.42499 -13.95297 -13.93083 -13.50133 -13.27064 -13.12843 -12.83700 -12.69296 -12.55120 -12.20111 -12.05423 -11.95454 -11.71170 -11.60228 -11.45113 -11.43216 -11.32157 -11.08372 -11.05303 -10.95919 -10.47187 -10.24713 -9.67574 -9.62456 -9.53550 -8.85300 -8.52696 -8.13056 -7.99858 -6.45189 -3.86169 2.83341 3.17346 3.23492 3.27586 3.30752 3.64148 3.86619 4.04332 4.21053 4.27910 4.48956 4.63600 4.80864 4.83905 4.89392 4.99653 5.00506 5.11695 5.19654 5.25132 5.26483 5.32145 5.40622 5.48133 5.50382 5.52610 5.62814 5.65674 5.71404 5.73252 5.78762 5.89177 5.94362 6.00337 6.05577 6.23016 6.61756 6.92528 7.13394 7.51576 7.58129 7.73088 8.02280 8.42803 8.57320 9.14239 9.50409 10.01695 10.72365 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.002431 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.046495 B =11513.580300 C =13001.299141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.083 0.917 4 C 0.135 3.865 5 N -0.715 5.715 6 C 0.513 3.487 7 O -0.542 6.542 8 C -0.143 4.143 9 C 0.099 3.901 10 H 0.078 0.922 11 C -0.154 4.154 12 C -0.156 4.156 13 C 0.049 3.951 14 O -0.367 6.367 15 N -0.663 5.663 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.409 0.591 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.353 0.647 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 -0.779 19.587 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.011 3.989 5 N -0.367 5.367 6 C 0.299 3.701 7 O -0.419 6.419 8 C -0.183 4.183 9 C 0.041 3.959 10 H 0.096 0.904 11 C -0.192 4.192 12 C -0.194 4.194 13 C -0.028 4.028 14 O -0.286 6.286 15 N -0.296 5.296 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.244 0.756 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.173 0.827 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.104 -1.556 20.335 21.023 hybrid contribution -0.386 0.439 -1.562 1.668 sum 4.719 -1.117 18.773 19.389 Atomic orbital electron populations 1.22435 0.96328 1.02697 1.02567 1.21856 0.93330 0.98315 0.90787 0.89845 1.21277 0.80523 1.00719 0.96425 1.45820 1.07608 1.59736 1.23567 1.20452 0.89742 0.77764 0.82156 1.90698 1.70238 1.47761 1.33206 1.21867 0.93396 1.03803 0.99227 1.22674 0.93865 0.94357 0.84997 0.90392 1.23367 0.95651 1.03450 0.96720 1.23125 1.00160 1.00682 0.95403 1.23102 0.87435 0.98861 0.93433 1.88546 1.43036 1.67048 1.29985 1.60182 1.57719 1.09176 1.02518 1.21719 1.00042 0.95643 0.90907 1.19808 0.85270 0.88246 0.84199 1.90529 1.55335 1.16248 1.84622 1.41866 1.57704 1.12443 1.07959 1.19645 1.40127 0.96419 0.86781 0.87989 1.25264 0.97614 0.95777 0.99260 1.69600 1.48522 1.08855 1.27312 0.85919 0.79459 0.78828 0.80021 1.19918 1.20974 1.19869 0.91857 0.92001 0.91984 0.91572 0.91744 0.75589 0.87330 0.88299 0.89593 0.90053 0.90106 0.90541 0.91595 0.91669 0.82692 0.93738 0.89643 0.77476 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.16 37.16 0.34 -1.45 16 2 C 0.07 0.76 2.75 -67.71 -0.19 0.58 16 3 H 0.08 0.88 7.80 -51.93 -0.40 0.47 16 4 C 0.14 1.63 5.37 -4.04 -0.02 1.61 16 5 N -0.72 -8.94 5.39 -60.29 -0.32 -9.26 16 6 C 0.51 7.05 7.74 -10.98 -0.09 6.96 16 7 O -0.54 -9.43 15.56 -4.45 -0.07 -9.50 16 8 C -0.14 -1.49 5.44 -27.88 -0.15 -1.64 16 9 C 0.10 1.06 2.91 -25.71 -0.07 0.99 16 10 H 0.08 0.93 7.96 -51.93 -0.41 0.52 16 11 C -0.15 -1.17 6.58 -24.42 -0.16 -1.33 16 12 C -0.16 -1.08 7.02 -24.73 -0.17 -1.26 16 13 C 0.05 0.44 7.80 37.88 0.30 0.73 16 14 O -0.37 -4.69 10.50 -45.24 -0.47 -5.17 16 15 N -0.66 -9.62 5.32 -108.00 -0.57 -10.19 16 16 C 0.05 0.80 5.97 -4.98 -0.03 0.77 16 17 C 0.44 9.87 7.82 -10.98 -0.09 9.79 16 18 O -0.58 -15.22 15.78 5.55 0.09 -15.13 16 19 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 21 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 24 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.63 7.45 -51.93 -0.39 0.25 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.41 4.84 8.14 -40.82 -0.33 4.50 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.35 5.56 8.17 -39.29 -0.32 5.24 16 43 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 44 H 0.09 1.25 8.06 -51.93 -0.42 0.83 16 45 H 0.39 9.19 7.90 -40.82 -0.32 8.86 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -33.38 381.46 -8.10 -41.48 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -7.56 Total: 15.63 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -0.57 Total: 7.91 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.23 Total: -56.67 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.46 Total: -29.79 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.38 -8.10 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491402360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.645 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds