Wall clock time and date at job start Fri Apr 10 2020 18:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46505 * 109.47578 * 174.99814 * 4 2 1 6 6 C 1.34776 * 120.00162 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99923 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99815 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46801 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.27486 * 54.30286 * 9 8 6 11 11 C 1.54943 * 110.30576 * 176.38895 * 9 8 6 12 12 C 1.55415 * 100.89066 * 155.29057 * 11 9 8 13 13 C 1.54379 * 102.31153 * 325.99128 * 12 11 9 14 14 O 1.43241 * 107.58917 * 21.28513 * 13 12 11 15 15 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 16 16 C 1.46897 * 111.00172 * 84.99810 * 15 2 1 17 17 C 1.50697 * 109.46908 * 180.02562 * 16 15 2 18 18 O 1.21287 * 120.00522 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00145 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00073 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99993 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00207 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47082 * 59.99970 * 24 22 20 26 26 H 1.48501 * 109.47084 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47395 * 300.00429 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 33 33 H 0.96998 * 119.99536 * 0.02562 * 5 4 2 34 34 H 1.08991 * 109.46751 * 299.99574 * 8 6 5 35 35 H 1.09002 * 109.47083 * 60.00009 * 8 6 5 36 36 H 1.09005 * 111.12409 * 273.27858 * 11 9 8 37 37 H 1.09001 * 111.13104 * 37.44392 * 11 9 8 38 38 H 1.09001 * 110.88275 * 207.74967 * 12 11 9 39 39 H 1.08998 * 110.93498 * 84.25153 * 12 11 9 40 40 H 1.09005 * 109.83112 * 261.77518 * 13 12 11 41 41 H 1.08995 * 109.83372 * 140.80375 * 13 12 11 42 42 H 1.00899 * 110.99467 * 321.04346 * 15 2 1 43 43 H 1.09005 * 109.47066 * 299.99968 * 16 15 2 44 44 H 1.09001 * 109.47085 * 59.99954 * 16 15 2 45 45 H 0.97005 * 119.99644 * 359.97438 * 19 17 16 46 46 H 0.97000 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4292 2.1905 7 8 3.5700 -1.8842 3.1393 8 6 5.6751 -1.5369 2.1304 9 6 6.1851 -2.2583 3.3796 10 1 5.6826 -3.2190 3.4925 11 6 7.7190 -2.4602 3.2953 12 6 8.0843 -2.5665 4.8021 13 6 7.0696 -1.6039 5.4556 14 8 5.9750 -1.4457 4.5453 15 7 2.0197 -0.6924 -1.1995 16 6 2.0825 0.2227 -2.3469 17 6 2.5874 -0.5216 -3.5560 18 8 2.8678 -1.6985 -3.4703 19 7 2.7283 0.1207 -4.7325 20 6 3.1881 -0.5563 -5.8324 21 1 3.4379 -1.6043 -5.7561 22 6 3.3329 0.1058 -7.0454 23 7 3.0286 1.3808 -7.1385 24 14 3.9601 -0.8164 -8.5439 25 1 3.0392 -1.9389 -8.8556 26 1 4.0228 0.1085 -9.7040 27 1 5.3165 -1.3523 -8.2635 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2950 33 1 3.9825 -0.4622 0.4318 34 1 5.9637 -2.0991 1.2424 35 1 6.1094 -0.5381 2.0852 36 1 7.9656 -3.3795 2.7639 37 1 8.2038 -1.5999 2.8340 38 1 9.1064 -2.2312 4.9787 39 1 7.9435 -3.5842 5.1662 40 1 7.5409 -0.6382 5.6386 41 1 6.7116 -2.0258 6.3947 42 1 1.4496 -1.4978 -1.4101 43 1 1.0870 0.6164 -2.5525 44 1 2.7588 1.0463 -2.1182 45 1 2.5044 1.0621 -4.8010 46 1 3.1300 1.8431 -7.9852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491402360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:37 Heat of formation + Delta-G solvation = -156.141086 kcal Electronic energy + Delta-G solvation = -25756.542269 eV Core-core repulsion = 21872.458551 eV Total energy + Delta-G solvation = -3884.083717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00123 -40.21810 -39.77991 -38.08085 -35.94744 -34.92986 -33.38883 -33.23595 -32.65871 -31.74926 -28.30772 -27.94507 -26.45025 -25.55733 -22.80751 -22.31821 -21.97034 -21.09947 -20.94646 -19.89576 -18.23017 -17.83244 -17.54037 -17.21734 -16.80074 -16.57493 -16.40494 -16.28003 -15.96539 -15.65532 -15.35524 -15.07092 -14.73711 -14.36521 -14.14324 -13.80507 -13.66289 -13.59532 -13.44410 -13.39842 -13.06021 -12.89317 -12.76375 -12.60016 -12.52295 -12.40575 -12.14791 -12.11787 -12.07160 -11.88330 -11.66423 -11.47819 -10.78033 -10.43267 -10.31641 -9.99027 -9.92519 -9.33388 -8.44744 -5.92968 1.40903 1.43150 1.53478 1.77526 2.09000 2.29835 2.35416 2.90776 2.92921 3.23081 3.54539 3.58388 3.78581 3.87657 3.98013 4.02862 4.11936 4.21080 4.30032 4.33439 4.37072 4.50641 4.52125 4.63208 4.64788 4.67733 4.70811 4.83871 4.85497 4.89932 4.92700 5.00336 5.02611 5.07681 5.25327 5.28766 5.42817 5.59537 5.90629 6.11484 6.18172 6.37031 6.62717 6.70792 7.15263 7.39135 7.59782 8.15134 8.72264 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.002431 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.046495 B =11513.580300 C =13001.299141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 H 0.100 0.900 4 C 0.136 3.864 5 N -0.710 5.710 6 C 0.505 3.495 7 O -0.585 6.585 8 C -0.138 4.138 9 C 0.092 3.908 10 H 0.056 0.944 11 C -0.147 4.147 12 C -0.150 4.150 13 C 0.038 3.962 14 O -0.401 6.401 15 N -0.672 5.672 16 C 0.066 3.934 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.271 1.271 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.413 0.587 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.344 0.656 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 0.178 19.508 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 H 0.118 0.882 4 C 0.011 3.989 5 N -0.362 5.362 6 C 0.293 3.707 7 O -0.466 6.466 8 C -0.178 4.178 9 C 0.034 3.966 10 H 0.074 0.926 11 C -0.184 4.184 12 C -0.188 4.188 13 C -0.038 4.038 14 O -0.321 6.321 15 N -0.304 5.304 16 C -0.066 4.066 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.250 0.750 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.164 0.836 43 H 0.084 0.916 44 H 0.128 0.872 45 H 0.230 0.770 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.988 -0.561 20.256 21.130 hybrid contribution -0.703 0.131 -1.447 1.614 sum 5.285 -0.431 18.808 19.541 Atomic orbital electron populations 1.22389 0.95009 1.02758 1.03456 1.21842 0.94289 0.98424 0.88648 0.88204 1.21287 0.80358 1.00105 0.97115 1.45859 1.07858 1.59092 1.23346 1.21084 0.91168 0.76909 0.81543 1.90673 1.71366 1.49651 1.34877 1.21926 0.90882 1.05076 0.99887 1.22733 0.95991 0.93201 0.84659 0.92625 1.23358 0.93019 1.04585 0.97450 1.23130 1.00607 1.00398 0.94616 1.23308 0.87319 1.00128 0.93052 1.88507 1.44980 1.67489 1.31141 1.60153 1.58400 1.09040 1.02843 1.21579 1.01298 0.95309 0.88464 1.20912 0.83324 0.87993 0.85158 1.90503 1.56581 1.18347 1.85468 1.41935 1.58382 1.12610 1.08215 1.19600 1.42079 0.95912 0.88561 0.90377 1.25998 0.97336 0.96600 1.01329 1.69659 1.48671 1.09640 1.28147 0.85028 0.78760 0.77818 0.76987 1.19865 1.19643 1.19664 0.90136 0.92441 0.91857 0.91056 0.93288 0.75021 0.85567 0.86594 0.88298 0.88890 0.87953 0.90251 0.90514 0.91772 0.83649 0.91575 0.87239 0.76972 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 9.16 71.98 0.66 -2.46 16 2 C 0.08 1.59 2.75 44.91 0.12 1.71 16 3 H 0.10 1.78 7.80 -2.39 -0.02 1.76 16 4 C 0.14 3.17 5.37 86.38 0.46 3.63 16 5 N -0.71 -17.21 5.39 -463.05 -2.50 -19.70 16 6 C 0.51 13.87 7.74 87.66 0.68 14.55 16 7 O -0.59 -20.94 15.56 6.54 0.10 -20.84 16 8 C -0.14 -2.75 5.44 29.85 0.16 -2.59 16 9 C 0.09 1.95 2.91 31.26 0.09 2.04 16 10 H 0.06 1.39 7.96 -2.39 -0.02 1.37 16 11 C -0.15 -1.96 6.58 32.09 0.21 -1.75 16 12 C -0.15 -1.82 7.02 31.89 0.22 -1.60 16 13 C 0.04 0.66 7.80 72.45 0.56 1.22 16 14 O -0.40 -10.30 10.50 -139.41 -1.46 -11.77 16 15 N -0.67 -18.52 5.32 -495.59 -2.63 -21.16 16 16 C 0.07 1.99 5.97 85.56 0.51 2.50 16 17 C 0.44 19.57 7.82 87.66 0.69 20.25 16 18 O -0.62 -32.87 15.78 -3.05 -0.05 -32.92 16 19 N -0.57 -28.17 5.29 -306.98 -1.62 -29.80 16 20 C -0.33 -18.32 9.68 84.04 0.81 -17.51 16 21 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -48.55 13.05 21.66 0.28 -48.26 16 24 Si 0.99 42.07 29.55 68.60 2.03 44.09 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 30 H 0.06 1.13 7.45 -2.38 -0.02 1.11 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 9.20 8.14 -92.71 -0.75 8.45 16 34 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.09 1.04 8.06 -2.39 -0.02 1.02 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.34 10.63 8.17 -89.69 -0.73 9.90 16 43 H 0.07 1.77 7.44 -2.38 -0.02 1.75 16 44 H 0.11 2.85 8.06 -2.39 -0.02 2.83 16 45 H 0.40 18.43 7.90 -92.70 -0.73 17.70 16 46 H 0.28 13.76 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -73.54 381.46 -1.41 -74.95 By element: Atomic # 1 Polarization: 46.83 SS G_CDS: -1.22 Total: 45.61 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.65 Total: 19.80 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.47 Total: -118.92 kcal Atomic # 8 Polarization: -64.12 SS G_CDS: -1.41 Total: -65.53 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -73.54 -1.41 -74.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491402360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.193 kcal (2) G-P(sol) polarization free energy of solvation -73.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds