Wall clock time and date at job start Fri Apr 10 2020 18:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46811 * 2 1 4 4 C 1.52997 * 109.47380 * 239.99783 * 2 1 3 5 5 N 1.46497 * 109.46983 * 185.00040 * 4 2 1 6 6 C 1.34780 * 119.99566 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00423 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99795 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.45650 * 54.29717 * 9 8 6 11 11 C 1.54509 * 110.51508 * 176.90166 * 9 8 6 12 12 C 1.54477 * 104.06179 * 118.64530 * 11 9 8 13 13 O 1.44422 * 104.80662 * 23.97936 * 12 11 9 14 14 C 1.44648 * 105.36857 * 319.56827 * 13 12 11 15 15 N 1.46905 * 109.47029 * 119.99434 * 2 1 3 16 16 C 1.46898 * 111.00329 * 275.00058 * 15 2 1 17 17 C 1.50694 * 109.47170 * 179.97438 * 16 15 2 18 18 O 1.21298 * 120.00308 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00454 * 180.02562 * 17 16 15 20 20 C 1.37088 * 120.00586 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99858 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00380 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00118 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99508 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47158 * 90.00712 * 24 22 20 26 26 H 1.48506 * 109.47030 * 209.99879 * 24 22 20 27 27 H 1.48494 * 109.47451 * 330.00131 * 24 22 20 28 28 H 1.09000 * 109.47301 * 300.00058 * 1 2 3 29 29 H 1.08998 * 109.47136 * 60.00153 * 1 2 3 30 30 H 1.09001 * 109.46558 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 64.99857 * 4 2 1 32 32 H 1.09002 * 109.47153 * 305.00048 * 4 2 1 33 33 H 0.96995 * 120.00423 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 35 35 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 36 36 H 1.08993 * 110.51483 * 237.29019 * 11 9 8 37 37 H 1.09005 * 110.50865 * 0.02562 * 11 9 8 38 38 H 1.08997 * 110.37004 * 142.81371 * 12 11 9 39 39 H 1.09009 * 110.37121 * 265.03659 * 12 11 9 40 40 H 1.08994 * 110.33695 * 281.58923 * 14 13 12 41 41 H 1.09002 * 110.50733 * 159.18634 * 14 13 12 42 42 H 1.00899 * 110.99799 * 38.96098 * 15 2 1 43 43 H 1.08992 * 109.46897 * 300.00360 * 16 15 2 44 44 H 1.09003 * 109.46664 * 60.00015 * 16 15 2 45 45 H 0.97003 * 119.99301 * 0.02562 * 19 17 16 46 46 H 0.97001 * 119.99842 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1910 7 8 3.5702 -1.8833 -3.1398 8 6 5.6750 -1.5369 -2.1303 9 6 6.1851 -2.2581 -3.3796 10 1 5.8208 -1.7638 -4.2803 11 6 7.7292 -2.3144 -3.3798 12 6 8.0497 -3.8254 -3.3617 13 8 6.8779 -4.4580 -3.9209 14 6 5.7522 -3.7409 -3.3632 15 7 2.0197 -0.6924 1.1995 16 6 2.0825 0.2227 2.3469 17 6 2.5873 -0.5216 3.5561 18 8 2.8678 -1.6986 3.4704 19 7 2.7273 0.1204 4.7328 20 6 3.1870 -0.5566 5.8327 21 1 3.4367 -1.6045 5.7563 22 6 3.3308 0.1052 7.0460 23 7 3.7711 -0.5439 8.1004 24 14 2.8983 1.9176 7.1782 25 1 1.4686 2.0592 7.5539 26 1 3.7482 2.5549 8.2159 27 1 3.1343 2.5796 5.8700 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.7517 -0.1583 -2.1369 32 1 1.6055 -1.7198 -1.2951 33 1 3.9825 -0.4621 -0.4318 34 1 6.1100 -0.5385 -2.0837 35 1 5.9631 -2.1005 -1.2429 36 1 8.1282 -1.8501 -4.2816 37 1 8.1292 -1.8288 -2.4896 38 1 8.9244 -4.0351 -3.9773 39 1 8.2155 -4.1660 -2.3396 40 1 5.5623 -4.0695 -2.3415 41 1 4.8649 -3.8841 -3.9799 42 1 1.4497 -1.4979 1.4101 43 1 2.7588 1.0463 2.1182 44 1 1.0871 0.6164 2.5525 45 1 2.5027 1.0616 4.8014 46 1 3.8718 -0.0817 8.9472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491419548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:40 Heat of formation + Delta-G solvation = -152.729505 kcal Electronic energy + Delta-G solvation = -25906.309287 eV Core-core repulsion = 22022.373507 eV Total energy + Delta-G solvation = -3883.935780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.10408 -40.34376 -39.81924 -38.12872 -35.99595 -34.96712 -34.48928 -33.72967 -31.99272 -30.71423 -28.54842 -28.07530 -26.46932 -25.37666 -23.82299 -21.98339 -21.75286 -21.26881 -20.85098 -20.27681 -18.30437 -17.71980 -17.28825 -17.14542 -16.83963 -16.75998 -16.47809 -16.23401 -16.19557 -15.66868 -15.42178 -14.94061 -14.64734 -14.55730 -14.44622 -14.11633 -13.84686 -13.71904 -13.53824 -13.38814 -13.11546 -12.97621 -12.78985 -12.57525 -12.47986 -12.39436 -12.12958 -11.96994 -11.87082 -11.86362 -11.52880 -11.49141 -10.78705 -10.77557 -10.41041 -10.23039 -9.93389 -9.33913 -8.39741 -6.00587 1.31443 1.37198 1.46216 1.73009 1.99418 2.24605 2.33585 2.73425 3.05536 3.17365 3.41045 3.58709 3.78237 3.88200 3.88421 4.03524 4.12678 4.22134 4.23814 4.34650 4.35763 4.47989 4.49554 4.59435 4.61162 4.67565 4.75586 4.81504 4.86452 4.89084 4.90577 4.93436 5.01412 5.13346 5.25866 5.27832 5.54312 5.58569 5.84392 5.92540 6.06022 6.34496 6.61570 6.68980 6.90785 7.35624 7.42691 7.99949 8.78034 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.002612 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.817269 B =10717.539854 C =12058.855067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.106 0.894 4 C 0.134 3.866 5 N -0.708 5.708 6 C 0.504 3.496 7 O -0.587 6.587 8 C -0.129 4.129 9 C -0.100 4.100 10 H 0.080 0.920 11 C -0.144 4.144 12 C 0.033 3.967 13 O -0.407 6.407 14 C 0.052 3.948 15 N -0.677 5.677 16 C 0.063 3.937 17 C 0.448 3.552 18 O -0.615 6.615 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.965 3.035 25 H -0.259 1.259 26 H -0.278 1.278 27 H -0.227 1.227 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.414 0.586 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.344 0.656 43 H 0.121 0.879 44 H 0.077 0.923 45 H 0.390 0.610 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 8.929 -21.790 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.032 4.032 3 H 0.124 0.876 4 C 0.009 3.991 5 N -0.359 5.359 6 C 0.291 3.709 7 O -0.468 6.468 8 C -0.169 4.169 9 C -0.119 4.119 10 H 0.099 0.901 11 C -0.182 4.182 12 C -0.043 4.043 13 O -0.326 6.326 14 C -0.024 4.024 15 N -0.310 5.310 16 C -0.070 4.070 17 C 0.237 3.763 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.456 4.456 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.578 5.578 24 Si 0.785 3.215 25 H -0.184 1.184 26 H -0.203 1.203 27 H -0.150 1.150 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.251 0.749 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.163 0.837 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.225 0.775 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.669 7.720 -22.600 23.940 hybrid contribution -0.990 0.606 1.546 1.934 sum 0.679 8.326 -21.053 22.650 Atomic orbital electron populations 1.22401 0.95072 1.02649 1.03605 1.21864 0.94223 0.98611 0.88457 0.87606 1.21324 0.80247 1.00136 0.97362 1.45862 1.07913 1.58848 1.23308 1.21142 0.91198 0.76782 0.81737 1.90665 1.71455 1.49597 1.35125 1.21803 0.90513 1.04765 0.99773 1.22207 0.95990 0.95355 0.98376 0.90120 1.23028 0.93632 0.96742 1.04795 1.23654 0.89080 0.92139 0.99438 1.89120 1.16397 1.57820 1.69284 1.23497 0.89683 0.90932 0.98300 1.60153 1.58616 1.09144 1.03041 1.21683 1.02011 0.95369 0.87897 1.21058 0.82392 0.87942 0.84954 1.90565 1.55285 1.18767 1.85275 1.42034 1.60665 1.11839 1.08810 1.18987 1.42356 0.95993 0.88297 0.92806 1.26136 0.96465 1.05040 0.93896 1.69810 1.46476 1.39661 1.01812 0.85359 0.79224 0.76508 0.80373 1.18382 1.20322 1.14975 0.91592 0.90099 0.92773 0.90568 0.93526 0.74933 0.85608 0.87748 0.89359 0.88091 0.87725 0.91777 0.92977 0.90185 0.83680 0.86159 0.90507 0.77456 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 9.16 71.98 0.66 -1.82 16 2 C 0.08 1.26 2.75 44.92 0.12 1.39 16 3 H 0.11 1.32 7.80 -2.39 -0.02 1.30 16 4 C 0.13 2.56 5.37 86.38 0.46 3.02 16 5 N -0.71 -14.04 5.39 -463.06 -2.50 -16.53 16 6 C 0.50 11.26 7.63 87.66 0.67 11.92 16 7 O -0.59 -17.36 14.91 -3.03 -0.05 -17.41 16 8 C -0.13 -2.04 4.92 29.85 0.15 -1.90 16 9 C -0.10 -1.80 2.71 -9.78 -0.03 -1.83 16 10 H 0.08 1.62 7.96 -2.38 -0.02 1.60 16 11 C -0.14 -1.89 6.74 31.61 0.21 -1.68 16 12 C 0.03 0.55 7.64 72.48 0.55 1.10 16 13 O -0.41 -10.05 11.65 -148.98 -1.74 -11.79 16 14 C 0.05 1.24 6.30 72.49 0.46 1.69 16 15 N -0.68 -16.18 5.32 -495.58 -2.63 -18.81 16 16 C 0.06 1.57 5.97 85.56 0.51 2.08 16 17 C 0.45 18.51 7.82 87.66 0.69 19.19 16 18 O -0.61 -32.10 15.78 -3.09 -0.05 -32.15 16 19 N -0.59 -26.10 5.09 -306.99 -1.56 -27.66 16 20 C -0.33 -18.51 10.16 84.04 0.85 -17.66 16 21 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 22 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 23 N -0.94 -55.54 13.96 21.66 0.30 -55.24 16 24 Si 0.97 37.12 27.74 68.60 1.90 39.03 16 25 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 26 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 27 H -0.23 -7.09 6.52 99.48 0.65 -6.44 16 28 H 0.07 0.89 7.45 -2.39 -0.02 0.87 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.41 7.47 8.14 -92.71 -0.75 6.71 16 34 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.58 8.01 -2.39 -0.02 1.56 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 0.93 7.73 -2.38 -0.02 0.91 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.05 1.25 7.78 -2.39 -0.02 1.23 16 41 H 0.08 2.15 7.71 -2.39 -0.02 2.13 16 42 H 0.34 9.64 8.17 -89.69 -0.73 8.91 16 43 H 0.12 2.33 8.05 -2.39 -0.02 2.31 16 44 H 0.08 1.55 7.44 -2.39 -0.02 1.53 16 45 H 0.39 13.97 5.76 -92.71 -0.53 13.43 16 46 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -80.08 376.05 -1.61 -81.70 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -1.07 Total: 43.80 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 5.78 Total: 15.07 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -6.39 Total: -118.25 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: -1.83 Total: -61.35 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 1.90 Total: 39.03 kcal Total: -80.08 -1.61 -81.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491419548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.034 kcal (2) G-P(sol) polarization free energy of solvation -80.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds