Wall clock time and date at job start Fri Apr 10 2020 18:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47026 * 2 1 4 4 C 1.53002 * 109.46991 * 119.99189 * 2 1 3 5 5 N 1.46496 * 109.47425 * 175.00428 * 4 2 1 6 6 C 1.34777 * 120.00266 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00135 * 0.27234 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46573 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.45942 * 54.30051 * 9 8 6 11 11 C 1.54514 * 110.50920 * 176.90324 * 9 8 6 12 12 C 1.54479 * 104.06171 * 118.64556 * 11 9 8 13 13 O 1.44420 * 104.80278 * 23.98064 * 12 11 9 14 14 C 1.44639 * 105.37088 * 319.56346 * 13 12 11 15 15 N 1.46893 * 109.47503 * 239.99232 * 2 1 3 16 16 C 1.46906 * 110.99908 * 84.99929 * 15 2 1 17 17 C 1.50698 * 109.47236 * 180.02562 * 16 15 2 18 18 O 1.21295 * 119.99709 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00124 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00082 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99662 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99891 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99956 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00170 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47236 * 90.00354 * 24 22 20 26 26 H 1.48504 * 109.47215 * 210.00753 * 24 22 20 27 27 H 1.48504 * 109.46966 * 330.00394 * 24 22 20 28 28 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47235 * 300.00819 * 1 2 3 30 30 H 1.08998 * 109.46498 * 60.00488 * 1 2 3 31 31 H 1.09004 * 109.46930 * 55.00250 * 4 2 1 32 32 H 1.09000 * 109.47312 * 295.00194 * 4 2 1 33 33 H 0.96999 * 119.99691 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47161 * 299.99737 * 8 6 5 35 35 H 1.09001 * 109.46740 * 59.99879 * 8 6 5 36 36 H 1.08996 * 110.51303 * 237.29138 * 11 9 8 37 37 H 1.09005 * 110.51105 * 0.02562 * 11 9 8 38 38 H 1.09007 * 110.37103 * 142.81139 * 12 11 9 39 39 H 1.08997 * 110.37253 * 265.03422 * 12 11 9 40 40 H 1.09000 * 110.34135 * 281.59274 * 14 13 12 41 41 H 1.09006 * 110.51208 * 159.18714 * 14 13 12 42 42 H 1.00900 * 111.00276 * 208.95778 * 15 2 1 43 43 H 1.08992 * 109.46997 * 300.00309 * 16 15 2 44 44 H 1.09004 * 109.46562 * 60.00175 * 16 15 2 45 45 H 0.96995 * 119.99947 * 359.97438 * 19 17 16 46 46 H 0.96995 * 120.00086 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5000 -0.8262 1.1909 6 6 4.1729 -1.4288 2.1911 7 8 3.5694 -1.8885 3.1372 8 6 5.6749 -1.5374 2.1305 9 6 6.1848 -2.2584 3.3799 10 1 5.6836 -3.2193 3.4965 11 6 7.7160 -2.4518 3.3064 12 6 8.2523 -1.6680 4.5247 13 8 7.1444 -1.6209 5.4500 14 6 5.9738 -1.3822 4.6346 15 7 2.0198 -0.6926 -1.1993 16 6 2.0826 0.2224 -2.3469 17 6 2.5875 -0.5221 -3.5559 18 8 2.8671 -1.6993 -3.4701 19 7 2.7285 0.1200 -4.7324 20 6 3.1873 -0.5574 -5.8325 21 1 3.4363 -1.6056 -5.7561 22 6 3.3331 0.1047 -7.0453 23 7 3.7735 -0.5445 -8.0996 24 14 2.9033 1.9178 -7.1772 25 1 4.1046 2.7349 -6.8702 26 1 2.4396 2.2176 -8.5557 27 1 1.8237 2.2421 -6.2103 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6054 -1.7197 1.2954 32 1 1.7516 -0.1581 2.1370 33 1 3.9824 -0.4627 0.4319 34 1 5.9629 -2.1004 1.2427 35 1 6.1097 -0.5389 2.0846 36 1 7.9719 -3.5081 3.3889 37 1 8.1097 -2.0334 2.3800 38 1 9.0974 -2.1922 4.9710 39 1 8.5449 -0.6606 4.2289 40 1 5.9138 -0.3299 4.3568 41 1 5.0711 -1.6879 5.1635 42 1 2.9174 -1.1206 -1.0285 43 1 1.0872 0.6160 -2.5525 44 1 2.7590 1.0460 -2.1182 45 1 2.5045 1.0613 -4.8011 46 1 3.8749 -0.0823 -8.9463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491419553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:53 Heat of formation + Delta-G solvation = -119.855706 kcal Electronic energy + Delta-G solvation = -25860.310346 eV Core-core repulsion = 21977.800081 eV Total energy + Delta-G solvation = -3882.510265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.44698 -39.27235 -38.60356 -37.13531 -34.25402 -33.86471 -33.78785 -31.76078 -31.12457 -30.11419 -27.88377 -26.78626 -25.61440 -23.81591 -23.18575 -21.18343 -20.79418 -20.27109 -19.48030 -18.49458 -17.65560 -16.67616 -16.49637 -16.21002 -16.03335 -15.63300 -15.50036 -15.29794 -14.99452 -14.74031 -14.09996 -13.99771 -13.69001 -13.26849 -13.15353 -12.96819 -12.80124 -12.73931 -12.36682 -12.25201 -12.08586 -11.99018 -11.85721 -11.62662 -11.55195 -11.26038 -11.19921 -10.99658 -10.93669 -10.65211 -10.07414 -10.03562 -10.03500 -9.63871 -9.31470 -8.67523 -8.31450 -8.23712 -6.36977 -3.88827 2.41809 2.89081 2.97353 3.01026 3.10320 3.65638 3.69886 3.92299 4.04655 4.17004 4.38968 4.51787 4.52262 4.65688 4.70006 4.74914 4.97536 4.99246 5.04634 5.13881 5.15110 5.17702 5.31377 5.39050 5.42308 5.47897 5.49017 5.59498 5.60672 5.64581 5.71603 5.75861 5.84036 5.85951 5.90649 6.10205 6.24598 6.50399 6.95865 7.19445 7.41060 7.51621 7.97187 8.07855 8.52988 8.88582 9.35781 9.75182 10.76022 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.002480 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.507842 B =11287.222698 C =12477.059509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.732 5.732 6 C 0.515 3.485 7 O -0.538 6.538 8 C -0.137 4.137 9 C -0.105 4.105 10 H 0.093 0.907 11 C -0.154 4.154 12 C 0.043 3.957 13 O -0.379 6.379 14 C 0.055 3.945 15 N -0.664 5.664 16 C 0.046 3.954 17 C 0.448 3.552 18 O -0.564 6.564 19 N -0.589 5.589 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.348 0.652 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.370 0.630 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 5.217 21.525 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.006 4.006 5 N -0.386 5.386 6 C 0.301 3.699 7 O -0.415 6.415 8 C -0.177 4.177 9 C -0.124 4.124 10 H 0.112 0.888 11 C -0.191 4.191 12 C -0.034 4.034 13 O -0.298 6.298 14 C -0.022 4.022 15 N -0.299 5.299 16 C -0.086 4.086 17 C 0.233 3.767 18 O -0.446 6.446 19 N -0.228 5.228 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.234 0.766 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.170 0.830 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.203 0.797 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.413 3.804 22.098 22.552 hybrid contribution 0.626 2.283 -0.984 2.564 sum 3.039 6.087 21.114 22.183 Atomic orbital electron populations 1.21742 0.93318 1.03085 1.01549 1.21817 0.97203 0.95863 0.88990 0.93357 1.21605 0.79364 1.02096 0.97522 1.46091 1.08186 1.60364 1.23912 1.20636 0.90055 0.77189 0.82008 1.90699 1.70425 1.47057 1.33350 1.21816 0.92162 1.03190 1.00515 1.22285 0.95444 1.00717 0.93975 0.88818 1.23046 0.94702 1.01990 0.99403 1.23405 0.90763 0.99485 0.89725 1.89161 1.16515 1.93388 1.30759 1.23542 0.89496 0.98014 0.91120 1.60101 1.34928 1.32181 1.02702 1.21795 1.01575 0.93882 0.91373 1.19682 0.84718 0.88230 0.84045 1.90576 1.53872 1.15782 1.84391 1.42210 1.59964 1.11092 1.09578 1.19429 1.40222 0.97997 0.85849 0.86266 1.25048 0.97420 0.98453 0.95224 1.69617 1.44919 1.36568 1.00848 0.86669 0.78968 0.85062 0.78662 1.19653 1.20118 1.19479 0.91405 0.92429 0.92030 0.90236 0.90802 0.76570 0.87891 0.88631 0.90251 0.90063 0.89182 0.92363 0.92701 0.88134 0.83014 0.89253 0.93735 0.79692 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.42 37.16 0.35 -1.00 16 2 C 0.07 0.74 2.81 -67.71 -0.19 0.55 16 3 H 0.05 0.45 7.80 -51.93 -0.40 0.04 16 4 C 0.12 1.19 5.31 -4.04 -0.02 1.17 16 5 N -0.73 -7.02 4.99 -60.29 -0.30 -7.32 16 6 C 0.51 5.42 7.63 -10.98 -0.08 5.34 16 7 O -0.54 -7.42 14.92 5.56 0.08 -7.34 16 8 C -0.14 -1.05 4.92 -27.88 -0.14 -1.19 16 9 C -0.11 -0.90 2.71 -89.05 -0.24 -1.15 16 10 H 0.09 0.94 7.96 -51.93 -0.41 0.52 16 11 C -0.15 -1.06 6.74 -25.16 -0.17 -1.23 16 12 C 0.04 0.33 7.64 37.93 0.29 0.62 16 13 O -0.38 -4.13 11.65 -35.23 -0.41 -4.54 16 14 C 0.05 0.54 6.31 37.93 0.24 0.78 16 15 N -0.66 -9.26 5.92 -107.99 -0.64 -9.90 16 16 C 0.05 0.70 5.97 -4.97 -0.03 0.67 16 17 C 0.45 9.65 7.82 -10.99 -0.09 9.56 16 18 O -0.56 -14.59 15.78 5.54 0.09 -14.50 16 19 N -0.59 -13.47 5.09 -10.96 -0.06 -13.52 16 20 C -0.31 -8.44 10.16 -14.93 -0.15 -8.59 16 21 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.21 13.96 55.50 0.77 -24.43 16 24 Si 0.88 18.78 27.74 -169.99 -4.71 14.06 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 3.31 7.37 -40.82 -0.30 3.01 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.56 8.01 -51.93 -0.42 0.14 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.45 7.73 -51.93 -0.40 0.05 16 38 H 0.09 0.57 8.14 -51.92 -0.42 0.14 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.49 7.78 -51.93 -0.40 0.09 16 41 H 0.10 1.10 7.71 -51.93 -0.40 0.70 16 42 H 0.35 4.98 6.41 -39.29 -0.25 4.72 16 43 H 0.09 1.23 7.43 -51.93 -0.39 0.84 16 44 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 45 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 46 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -34.16 374.02 -7.23 -41.39 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -7.36 Total: 13.91 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.33 Total: 6.55 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.22 Total: -55.17 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.24 Total: -26.37 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.16 -7.23 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491419553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.467 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds