Wall clock time and date at job start Fri Apr 10 2020 18:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47210 * 2 1 4 4 C 1.53000 * 109.46846 * 239.99499 * 2 1 3 5 5 N 1.46499 * 109.46840 * 185.00008 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 H 1.09003 * 109.47825 * 304.99928 * 8 6 5 10 10 C 1.53090 * 109.48092 * 65.02291 * 8 6 5 11 11 C 1.53174 * 109.16382 * 177.59176 * 10 8 6 12 12 C 1.53182 * 109.03590 * 303.02337 * 11 10 8 13 13 C 1.53086 * 109.16750 * 56.97846 * 12 11 10 14 14 O 1.42901 * 109.42069 * 302.39889 * 13 12 11 15 15 N 1.46900 * 109.46916 * 119.99923 * 2 1 3 16 16 C 1.46905 * 110.99977 * 274.99671 * 15 2 1 17 17 C 1.50696 * 109.47026 * 180.02562 * 16 15 2 18 18 O 1.21295 * 120.00154 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99785 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99857 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00245 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99895 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00077 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47011 * 59.99635 * 24 22 20 26 26 H 1.48495 * 109.47273 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46778 * 299.99553 * 24 22 20 28 28 H 1.08996 * 109.46751 * 300.00344 * 1 2 3 29 29 H 1.09002 * 109.46824 * 60.00084 * 1 2 3 30 30 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 32 32 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 33 33 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.52642 * 297.49919 * 10 8 6 35 35 H 1.09000 * 109.52126 * 57.68765 * 10 8 6 36 36 H 1.09001 * 109.54662 * 62.88300 * 11 10 8 37 37 H 1.09003 * 109.54728 * 183.06511 * 11 10 8 38 38 H 1.09008 * 109.52213 * 176.89066 * 12 11 10 39 39 H 1.09009 * 109.51790 * 297.07073 * 12 11 10 40 40 H 1.09002 * 109.48126 * 62.37518 * 13 12 11 41 41 H 1.08995 * 109.48573 * 182.40065 * 13 12 11 42 42 H 1.00900 * 111.00219 * 38.95150 * 15 2 1 43 43 H 1.08994 * 109.47293 * 300.00324 * 16 15 2 44 44 H 1.09001 * 109.46690 * 60.00424 * 16 15 2 45 45 H 0.97002 * 120.00416 * 359.97438 * 19 17 16 46 46 H 0.96994 * 120.00261 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4285 -2.1911 7 8 3.5700 -1.8836 -3.1398 8 6 5.6749 -1.5372 -2.1305 9 1 6.1059 -0.5452 -1.9946 10 6 6.0750 -2.4330 -0.9553 11 6 7.5988 -2.5873 -0.9366 12 6 8.0603 -3.1537 -2.2829 13 6 7.5836 -2.2300 -3.4068 14 8 6.1612 -2.1053 -3.3482 15 7 2.0197 -0.6925 1.1995 16 6 2.0825 0.2227 2.3469 17 6 2.5885 -0.5214 3.5557 18 8 2.8687 -1.6984 3.4700 19 7 2.7287 0.1207 4.7324 20 6 3.1895 -0.5561 5.8320 21 1 3.4398 -1.6039 5.7555 22 6 3.3345 0.1061 7.0449 23 7 3.0305 1.3811 7.1380 24 14 3.9617 -0.8162 8.5434 25 1 5.3179 -1.3523 8.2629 26 1 4.0259 0.1090 9.7031 27 1 3.0405 -1.9384 8.8553 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -1.7199 -1.2951 32 1 1.7517 -0.1585 -2.1370 33 1 3.9824 -0.4629 -0.4316 34 1 5.7433 -1.9789 -0.0216 35 1 5.6111 -3.4128 -1.0698 36 1 8.0619 -1.6142 -0.7726 37 1 7.8867 -3.2678 -0.1352 38 1 9.1485 -3.2150 -2.2986 39 1 7.6365 -4.1481 -2.4242 40 1 8.0397 -1.2473 -3.2877 41 1 7.8723 -2.6505 -4.3701 42 1 1.4496 -1.4979 1.4101 43 1 2.7589 1.0462 2.1182 44 1 1.0871 0.6164 2.5525 45 1 2.5042 1.0619 4.8011 46 1 3.1320 1.8434 7.9846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491429380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:56 Heat of formation + Delta-G solvation = -131.699484 kcal Electronic energy + Delta-G solvation = -26366.078076 eV Core-core repulsion = 22483.054226 eV Total energy + Delta-G solvation = -3883.023850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.29359 -38.78433 -38.28486 -36.86110 -34.27141 -33.92760 -33.55920 -31.78881 -31.29164 -30.55366 -27.00833 -26.36540 -25.00716 -24.06522 -23.87838 -21.04917 -20.75247 -20.19681 -19.35181 -17.97877 -17.50482 -16.82680 -16.07822 -15.94669 -15.74411 -15.22592 -15.16569 -14.83283 -14.64720 -14.43263 -14.40496 -13.94880 -13.74161 -13.39458 -13.14294 -12.91457 -12.80925 -12.58749 -12.39969 -12.22293 -11.77062 -11.64425 -11.61986 -11.43772 -11.40518 -11.23297 -11.06950 -11.01217 -10.64626 -10.48403 -10.26210 -9.76042 -9.55301 -9.54792 -8.97035 -8.55208 -8.16263 -8.01549 -6.46776 -3.87815 2.65270 2.84201 3.16200 3.22531 3.26580 3.84770 3.91041 4.03190 4.25531 4.52702 4.61749 4.62871 4.74250 4.75509 4.85791 4.92121 5.00695 5.08702 5.17067 5.21516 5.23208 5.34957 5.47417 5.50632 5.59162 5.60461 5.66842 5.72034 5.72868 5.84970 5.85701 5.90387 5.96236 6.02078 6.08765 6.20675 6.48176 6.92497 7.09639 7.50127 7.54331 7.61306 8.00657 8.29144 8.55565 9.12696 9.48724 9.99878 10.70779 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.003055 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.290968 B = 9162.213676 C =11051.094781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.136 3.864 5 N -0.709 5.709 6 C 0.519 3.481 7 O -0.532 6.532 8 C 0.076 3.924 9 H 0.081 0.919 10 C -0.146 4.146 11 C -0.121 4.121 12 C -0.159 4.159 13 C 0.060 3.940 14 O -0.357 6.357 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.439 3.561 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.410 0.590 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.354 0.646 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 0.129 -16.466 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.011 3.989 5 N -0.362 5.362 6 C 0.304 3.696 7 O -0.408 6.408 8 C 0.015 3.985 9 H 0.099 0.901 10 C -0.184 4.184 11 C -0.159 4.159 12 C -0.196 4.196 13 C -0.017 4.017 14 O -0.275 6.275 15 N -0.296 5.296 16 C -0.083 4.083 17 C 0.224 3.776 18 O -0.467 6.467 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.245 0.755 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.174 0.826 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.512 -0.843 -17.342 17.939 hybrid contribution -0.365 0.603 1.773 1.908 sum 4.146 -0.240 -15.569 16.113 Atomic orbital electron populations 1.22433 0.96197 1.02764 1.02626 1.21855 0.93418 0.98309 0.90705 0.89754 1.21328 0.79849 1.01001 0.96677 1.45681 1.07750 1.59538 1.23246 1.20103 0.88773 0.78143 0.82626 1.90697 1.69848 1.46885 1.33327 1.21876 0.92226 0.97693 0.86701 0.90109 1.22146 0.96976 1.01367 0.97957 1.21587 0.94989 1.01814 0.97498 1.22227 1.01347 1.00524 0.95545 1.22643 0.81011 0.98649 0.99374 1.88041 1.21034 1.83176 1.35203 1.60185 1.57723 1.09202 1.02523 1.21721 1.00070 0.95630 0.90915 1.19799 0.85314 0.88255 0.84187 1.90535 1.55359 1.16205 1.84610 1.41862 1.57655 1.12463 1.07946 1.19648 1.40138 0.96442 0.86804 0.87977 1.25257 0.97575 0.95759 0.99249 1.69595 1.48501 1.08857 1.27334 0.85926 0.79474 0.78848 0.80037 1.19861 1.20964 1.19895 0.91913 0.91831 0.91950 0.91484 0.91340 0.75453 0.89348 0.90369 0.91521 0.90743 0.90769 0.90862 0.93097 0.88546 0.82615 0.89657 0.93691 0.77486 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 2 C 0.07 0.72 2.75 -67.71 -0.19 0.53 16 3 H 0.08 0.83 7.80 -51.93 -0.40 0.42 16 4 C 0.14 1.56 5.37 -4.04 -0.02 1.53 16 5 N -0.71 -8.59 5.35 -60.29 -0.32 -8.91 16 6 C 0.52 7.34 7.18 -10.98 -0.08 7.26 16 7 O -0.53 -9.61 16.51 -14.29 -0.24 -9.85 16 8 C 0.08 0.90 3.05 -27.84 -0.09 0.82 16 9 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 10 C -0.15 -1.62 5.37 -26.59 -0.14 -1.76 16 11 C -0.12 -1.11 6.03 -26.55 -0.16 -1.27 16 12 C -0.16 -1.33 6.14 -26.59 -0.16 -1.49 16 13 C 0.06 0.55 6.84 37.20 0.25 0.80 16 14 O -0.36 -4.70 9.94 -55.08 -0.55 -5.24 16 15 N -0.66 -9.24 5.31 -107.99 -0.57 -9.81 16 16 C 0.05 0.77 5.97 -4.98 -0.03 0.74 16 17 C 0.44 9.68 7.82 -10.99 -0.09 9.59 16 18 O -0.58 -14.96 15.78 5.54 0.09 -14.87 16 19 N -0.56 -13.60 5.29 -10.96 -0.06 -13.66 16 20 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 21 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 24 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.41 4.64 7.99 -40.82 -0.33 4.31 16 34 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 39 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.35 5.39 8.17 -39.29 -0.32 5.07 16 43 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 44 H 0.05 0.64 7.44 -51.93 -0.39 0.26 16 45 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 46 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 378.91 15.07 5.71 5.71 Total: -1.00 -32.88 378.91 -8.40 -41.28 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -7.56 Total: 15.34 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -0.60 Total: 7.65 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.23 Total: -55.56 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.70 Total: -29.97 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.88 -8.40 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491429380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.417 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds