Wall clock time and date at job start Fri Apr 10 2020 18:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47210 * 2 1 4 4 C 1.53000 * 109.46846 * 239.99499 * 2 1 3 5 5 N 1.46499 * 109.46840 * 185.00008 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 H 1.09003 * 109.47825 * 304.99928 * 8 6 5 10 10 C 1.53090 * 109.48092 * 65.02291 * 8 6 5 11 11 C 1.53174 * 109.16382 * 177.59176 * 10 8 6 12 12 C 1.53182 * 109.03590 * 303.02337 * 11 10 8 13 13 C 1.53086 * 109.16750 * 56.97846 * 12 11 10 14 14 O 1.42901 * 109.42069 * 302.39889 * 13 12 11 15 15 N 1.46900 * 109.46916 * 119.99923 * 2 1 3 16 16 C 1.46905 * 110.99977 * 274.99671 * 15 2 1 17 17 C 1.50696 * 109.47026 * 180.02562 * 16 15 2 18 18 O 1.21295 * 120.00154 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99785 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99857 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00245 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99895 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00077 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47011 * 59.99635 * 24 22 20 26 26 H 1.48495 * 109.47273 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46778 * 299.99553 * 24 22 20 28 28 H 1.08996 * 109.46751 * 300.00344 * 1 2 3 29 29 H 1.09002 * 109.46824 * 60.00084 * 1 2 3 30 30 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 32 32 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 33 33 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.52642 * 297.49919 * 10 8 6 35 35 H 1.09000 * 109.52126 * 57.68765 * 10 8 6 36 36 H 1.09001 * 109.54662 * 62.88300 * 11 10 8 37 37 H 1.09003 * 109.54728 * 183.06511 * 11 10 8 38 38 H 1.09008 * 109.52213 * 176.89066 * 12 11 10 39 39 H 1.09009 * 109.51790 * 297.07073 * 12 11 10 40 40 H 1.09002 * 109.48126 * 62.37518 * 13 12 11 41 41 H 1.08995 * 109.48573 * 182.40065 * 13 12 11 42 42 H 1.00900 * 111.00219 * 38.95150 * 15 2 1 43 43 H 1.08994 * 109.47293 * 300.00324 * 16 15 2 44 44 H 1.09001 * 109.46690 * 60.00424 * 16 15 2 45 45 H 0.97002 * 120.00416 * 359.97438 * 19 17 16 46 46 H 0.96994 * 120.00261 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4285 -2.1911 7 8 3.5700 -1.8836 -3.1398 8 6 5.6749 -1.5372 -2.1305 9 1 6.1059 -0.5452 -1.9946 10 6 6.0750 -2.4330 -0.9553 11 6 7.5988 -2.5873 -0.9366 12 6 8.0603 -3.1537 -2.2829 13 6 7.5836 -2.2300 -3.4068 14 8 6.1612 -2.1053 -3.3482 15 7 2.0197 -0.6925 1.1995 16 6 2.0825 0.2227 2.3469 17 6 2.5885 -0.5214 3.5557 18 8 2.8687 -1.6984 3.4700 19 7 2.7287 0.1207 4.7324 20 6 3.1895 -0.5561 5.8320 21 1 3.4398 -1.6039 5.7555 22 6 3.3345 0.1061 7.0449 23 7 3.0305 1.3811 7.1380 24 14 3.9617 -0.8162 8.5434 25 1 5.3179 -1.3523 8.2629 26 1 4.0259 0.1090 9.7031 27 1 3.0405 -1.9384 8.8553 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -1.7199 -1.2951 32 1 1.7517 -0.1585 -2.1370 33 1 3.9824 -0.4629 -0.4316 34 1 5.7433 -1.9789 -0.0216 35 1 5.6111 -3.4128 -1.0698 36 1 8.0619 -1.6142 -0.7726 37 1 7.8867 -3.2678 -0.1352 38 1 9.1485 -3.2150 -2.2986 39 1 7.6365 -4.1481 -2.4242 40 1 8.0397 -1.2473 -3.2877 41 1 7.8723 -2.6505 -4.3701 42 1 1.4496 -1.4979 1.4101 43 1 2.7589 1.0462 2.1182 44 1 1.0871 0.6164 2.5525 45 1 2.5042 1.0619 4.8011 46 1 3.1320 1.8434 7.9846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491429380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:55 Heat of formation + Delta-G solvation = -156.761461 kcal Electronic energy + Delta-G solvation = -26367.164845 eV Core-core repulsion = 22483.054226 eV Total energy + Delta-G solvation = -3884.110619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28502 -40.19607 -39.50847 -38.05245 -35.95090 -35.19643 -34.50181 -33.26031 -32.66161 -31.60168 -27.94624 -27.85421 -26.01481 -25.45945 -24.81672 -22.00230 -21.63004 -21.12337 -21.06400 -19.89456 -18.55197 -17.87089 -17.53633 -17.00393 -16.68079 -16.54079 -16.32076 -16.22406 -15.90628 -15.63545 -15.41474 -15.26532 -14.89228 -14.63984 -14.36764 -13.86476 -13.68799 -13.60269 -13.59609 -13.40761 -13.31459 -13.05759 -12.76479 -12.57636 -12.46301 -12.40204 -12.19907 -12.12038 -11.96992 -11.89050 -11.47507 -11.40269 -10.74837 -10.48607 -10.30736 -10.02700 -9.98523 -9.33179 -8.44737 -5.92778 1.40700 1.43079 1.53128 1.55943 1.91357 2.09860 2.30192 2.89664 3.08710 3.23387 3.53867 3.66227 3.77954 3.85247 3.88451 4.00885 4.03826 4.12430 4.20285 4.33853 4.37459 4.49502 4.51969 4.61238 4.64197 4.66586 4.77908 4.78273 4.84646 4.90114 5.00782 5.02198 5.08427 5.14692 5.26459 5.33850 5.43038 5.47398 5.90886 6.10634 6.12895 6.37083 6.59700 6.63196 7.15718 7.23750 7.60529 8.15964 8.72323 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.003055 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.290968 B = 9162.213676 C =11051.094781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 H 0.103 0.897 4 C 0.135 3.865 5 N -0.699 5.699 6 C 0.513 3.487 7 O -0.578 6.578 8 C 0.079 3.921 9 H 0.107 0.893 10 C -0.142 4.142 11 C -0.121 4.121 12 C -0.155 4.155 13 C 0.053 3.947 14 O -0.388 6.388 15 N -0.673 5.673 16 C 0.065 3.935 17 C 0.439 3.561 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.988 3.012 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.274 1.274 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.415 0.585 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.345 0.655 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.925 1.512 -16.548 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 H 0.121 0.879 4 C 0.011 3.989 5 N -0.351 5.351 6 C 0.299 3.701 7 O -0.458 6.458 8 C 0.018 3.982 9 H 0.125 0.875 10 C -0.181 4.181 11 C -0.158 4.158 12 C -0.193 4.193 13 C -0.023 4.023 14 O -0.307 6.307 15 N -0.305 5.305 16 C -0.067 4.067 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.812 3.188 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.199 1.199 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.252 0.748 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.164 0.836 43 H 0.129 0.871 44 H 0.085 0.915 45 H 0.230 0.770 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.222 0.579 -17.415 18.190 hybrid contribution -0.603 0.148 1.727 1.836 sum 4.619 0.727 -15.688 16.370 Atomic orbital electron populations 1.22386 0.94894 1.02776 1.03547 1.21855 0.94354 0.98519 0.88476 0.87871 1.21388 0.79399 1.00484 0.97616 1.45684 1.08123 1.58538 1.22784 1.20625 0.89928 0.77378 0.82148 1.90665 1.70944 1.49015 1.35163 1.21914 0.90632 0.98990 0.86621 0.87523 1.22094 0.98542 0.99961 0.97460 1.21615 0.93314 1.02815 0.98052 1.22210 1.02697 0.99571 0.94785 1.22901 0.79165 0.99937 1.00287 1.88004 1.23434 1.83552 1.35743 1.60157 1.58421 1.09062 1.02882 1.21583 1.01349 0.95305 0.88434 1.20925 0.83292 0.87997 0.85154 1.90511 1.56569 1.18332 1.85464 1.41926 1.58389 1.12626 1.08195 1.19600 1.42043 0.95925 0.88614 0.90400 1.25967 0.97324 0.96559 1.01262 1.69651 1.48717 1.09625 1.28141 0.85053 0.78772 0.77848 0.77089 1.19683 1.19654 1.19888 0.91825 0.90006 0.92485 0.93071 0.90321 0.74798 0.89701 0.92647 0.89913 0.90667 0.88364 0.92183 0.91233 0.87391 0.83622 0.87147 0.91512 0.76979 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.16 71.98 0.66 -2.24 16 2 C 0.08 1.48 2.75 44.92 0.12 1.60 16 3 H 0.10 1.64 7.80 -2.39 -0.02 1.62 16 4 C 0.14 2.96 5.37 86.38 0.46 3.42 16 5 N -0.70 -16.41 5.35 -463.05 -2.48 -18.89 16 6 C 0.51 14.53 7.18 87.66 0.63 15.16 16 7 O -0.58 -21.39 16.51 15.96 0.26 -21.13 16 8 C 0.08 1.83 3.05 29.88 0.09 1.92 16 9 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 10 C -0.14 -3.12 5.37 30.68 0.16 -2.95 16 11 C -0.12 -2.03 6.03 30.71 0.19 -1.85 16 12 C -0.16 -2.36 6.14 30.68 0.19 -2.17 16 13 C 0.05 0.88 6.84 72.01 0.49 1.38 16 14 O -0.39 -10.07 9.94 -130.00 -1.29 -11.36 16 15 N -0.67 -17.78 5.31 -495.58 -2.63 -20.41 16 16 C 0.07 1.91 5.97 85.55 0.51 2.42 16 17 C 0.44 19.22 7.82 87.66 0.69 19.91 16 18 O -0.62 -32.42 15.78 -3.08 -0.05 -32.47 16 19 N -0.57 -27.80 5.29 -306.98 -1.62 -29.42 16 20 C -0.33 -18.20 9.68 84.04 0.81 -17.39 16 21 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -48.24 13.05 21.66 0.28 -47.96 16 24 Si 0.99 41.85 29.55 68.60 2.03 43.88 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.42 8.85 7.99 -92.71 -0.74 8.11 16 34 H 0.08 1.88 7.99 -2.39 -0.02 1.86 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.34 10.31 8.17 -89.69 -0.73 9.58 16 43 H 0.11 2.74 8.05 -2.39 -0.02 2.72 16 44 H 0.07 1.71 7.44 -2.39 -0.02 1.70 16 45 H 0.40 18.18 7.90 -92.71 -0.73 17.45 16 46 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -72.58 378.91 -1.23 -73.81 By element: Atomic # 1 Polarization: 46.07 SS G_CDS: -1.20 Total: 44.87 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 5.47 Total: 19.09 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -6.45 Total: -116.68 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -1.08 Total: -64.96 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -72.58 -1.23 -73.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491429380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.956 kcal (2) G-P(sol) polarization free energy of solvation -72.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds