Wall clock time and date at job start Fri Apr 10 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99807 * 2 1 4 4 C 1.52997 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.50707 * 115.54902 * 65.13390 * 4 3 2 6 6 O 1.21275 * 119.99801 * 245.46201 * 5 4 3 7 7 N 1.34778 * 119.99874 * 65.46443 * 5 4 3 8 8 C 1.46496 * 119.99948 * 185.01466 * 7 5 4 9 9 C 1.52996 * 109.47266 * 179.97438 * 8 7 5 10 10 H 1.08995 * 109.47128 * 294.99906 * 9 8 7 11 11 C 1.53005 * 109.47359 * 175.00055 * 9 8 7 12 12 N 1.46899 * 109.47017 * 54.99857 * 9 8 7 13 13 C 1.46900 * 110.99973 * 204.99840 * 12 9 8 14 14 C 1.50700 * 109.47423 * 179.97438 * 13 12 9 15 15 O 1.21294 * 119.99500 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00205 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99586 * 179.97438 * 16 14 13 18 18 H 1.07991 * 120.00579 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99489 * 180.02562 * 17 16 14 20 20 N 1.31408 * 119.99626 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00137 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.46787 * 89.99961 * 21 19 17 23 23 H 1.48499 * 109.47013 * 209.99710 * 21 19 17 24 24 H 1.48498 * 109.47348 * 330.00143 * 21 19 17 25 25 C 1.52997 * 117.50141 * 279.46244 * 4 3 2 26 26 C 1.52999 * 117.50427 * 210.80266 * 4 3 2 27 27 H 1.08997 * 109.47399 * 59.99617 * 1 2 3 28 28 H 1.09001 * 109.47154 * 299.99399 * 1 2 3 29 29 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47423 * 300.00379 * 3 2 1 31 31 H 1.09002 * 109.46689 * 60.00543 * 3 2 1 32 32 H 0.97000 * 120.00149 * 5.01101 * 7 5 4 33 33 H 1.09002 * 109.47011 * 299.99960 * 8 7 5 34 34 H 1.09002 * 109.47376 * 59.99298 * 8 7 5 35 35 H 1.08998 * 109.47095 * 180.02562 * 11 9 8 36 36 H 1.09003 * 109.46678 * 299.99808 * 11 9 8 37 37 H 1.08997 * 109.46952 * 59.99392 * 11 9 8 38 38 H 1.00898 * 111.00071 * 328.95696 * 12 9 8 39 39 H 1.08998 * 109.47491 * 300.00168 * 13 12 9 40 40 H 1.09010 * 109.46688 * 60.00197 * 13 12 9 41 41 H 0.96994 * 119.99957 * 0.02562 * 16 14 13 42 42 H 0.97000 * 119.99832 * 179.97438 * 20 19 17 43 43 H 1.09000 * 117.50357 * 0.02562 * 25 4 3 44 44 H 1.09007 * 117.50162 * 145.02115 * 25 4 3 45 45 H 1.08997 * 117.50163 * 214.98309 * 26 4 3 46 46 H 1.09006 * 117.49700 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1387 0.5632 -1.2326 6 8 4.7113 -0.5031 -1.1561 7 7 4.0419 1.1924 -2.4206 8 6 4.5304 0.5392 -3.6374 9 6 4.3026 1.4605 -4.8375 10 1 3.2324 1.5966 -4.9930 11 6 4.9239 0.8334 -6.0872 12 7 4.9296 2.7638 -4.5802 13 6 4.2778 3.8247 -5.3598 14 6 4.9460 5.1439 -5.0700 15 8 5.8743 5.1953 -4.2909 16 7 4.5129 6.2665 -5.6771 17 6 5.1205 7.4668 -5.4129 18 1 5.9465 7.5127 -4.7187 19 6 4.6736 8.6242 -6.0385 20 7 5.2563 9.7746 -5.7857 21 14 3.2445 8.5450 -7.2388 22 1 1.9696 8.7467 -6.5044 23 1 3.3991 9.6086 -8.2635 24 1 3.2285 7.2167 -7.9026 25 6 4.2215 0.9067 1.3396 26 6 4.3315 2.2910 0.6957 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6885 1.8464 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 3.6487 2.0778 -2.4698 33 1 5.5956 0.3313 -3.5356 34 1 3.9908 -0.3955 -3.7898 35 1 4.7620 1.4900 -6.9420 36 1 5.9942 0.6974 -5.9316 37 1 4.4587 -0.1336 -6.2780 38 1 4.9203 2.9814 -3.5950 39 1 4.3635 3.5993 -6.4228 40 1 3.2246 3.8830 -5.0845 41 1 3.7708 6.2253 -6.3003 42 1 4.9446 10.5825 -6.2227 43 1 3.5864 0.8095 2.2201 44 1 5.1095 0.2746 1.3285 45 1 5.2916 2.5691 0.2612 46 1 3.7686 3.1053 1.1522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491524555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:12 Heat of formation + Delta-G solvation = -83.593882 kcal Electronic energy + Delta-G solvation = -26341.301525 eV Core-core repulsion = 22460.363691 eV Total energy + Delta-G solvation = -3880.937834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41558 -38.76098 -38.17921 -37.18181 -36.28463 -34.18955 -33.76893 -31.73501 -31.01998 -28.71481 -27.09193 -26.50372 -25.79082 -23.87949 -23.02347 -22.62242 -20.72027 -19.83347 -19.40753 -18.42858 -17.59411 -16.66669 -16.41296 -16.25615 -16.06506 -15.65186 -15.47501 -15.37799 -14.85348 -14.61793 -14.34475 -13.97589 -13.75806 -13.22705 -12.94979 -12.84800 -12.71295 -12.63971 -12.42419 -12.23139 -12.05269 -11.90534 -11.86625 -11.70938 -11.58886 -11.24221 -10.97858 -10.90427 -10.63730 -10.58063 -10.06956 -10.01756 -9.81601 -9.61844 -9.21049 -8.64382 -8.27866 -8.21340 -6.35256 -3.86909 2.46793 2.88700 2.98772 3.02300 3.08692 3.11503 3.68287 3.72648 3.96648 4.06307 4.33627 4.45606 4.56047 4.59990 4.70542 4.73433 4.91274 4.97924 5.04810 5.07916 5.17055 5.17409 5.20612 5.32881 5.38798 5.45477 5.50000 5.52036 5.64272 5.66844 5.71343 5.79678 5.86956 5.87034 5.90317 6.17064 6.31464 6.76507 7.00171 7.30744 7.45402 7.53683 8.09728 8.09997 8.55113 8.90606 9.37842 9.77593 10.77818 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.002955 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.326784 B = 9473.158374 C =10030.583744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.105 3.895 4 C -0.167 4.167 5 C 0.561 3.439 6 O -0.531 6.531 7 N -0.728 5.728 8 C 0.119 3.881 9 C 0.072 3.928 10 H 0.048 0.952 11 C -0.138 4.138 12 N -0.663 5.663 13 C 0.046 3.954 14 C 0.448 3.552 15 O -0.563 6.563 16 N -0.590 5.590 17 C -0.306 4.306 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C -0.134 4.134 26 C -0.149 4.149 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.398 0.602 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.349 0.651 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.454 -17.718 7.581 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.028 3.972 4 C -0.170 4.170 5 C 0.346 3.654 6 O -0.406 6.406 7 N -0.381 5.381 8 C -0.005 4.005 9 C -0.038 4.038 10 H 0.066 0.934 11 C -0.196 4.196 12 N -0.299 5.299 13 C -0.086 4.086 14 C 0.234 3.766 15 O -0.445 6.445 16 N -0.229 5.229 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.171 4.171 26 C -0.186 4.186 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.170 0.830 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.783 -18.498 7.660 22.284 hybrid contribution -2.491 1.018 -0.742 2.791 sum -12.273 -17.480 6.918 22.451 Atomic orbital electron populations 1.22762 0.80849 1.02948 1.00020 1.87978 1.19622 1.27200 1.95377 1.21876 0.89104 0.85186 1.01012 1.21337 0.93905 1.07481 0.94320 1.19248 0.78571 0.84407 0.83136 1.90686 1.42351 1.21956 1.85631 1.45958 1.63727 1.21149 1.07249 1.21606 1.01019 0.95508 0.82345 1.21811 0.96835 0.89959 0.95208 0.93392 1.21739 1.01956 0.99643 0.96312 1.60106 1.56375 1.00002 1.13386 1.21795 0.95539 0.91474 0.99819 1.19687 0.87006 0.84459 0.85456 1.90576 1.30220 1.85807 1.37914 1.42205 1.32136 1.07743 1.40815 1.19432 1.16185 0.81998 1.25828 0.86262 1.25043 0.98076 0.95052 0.97958 1.69619 1.40894 0.98611 1.42904 0.86673 0.82814 0.78398 0.81499 1.19677 1.20142 1.19478 1.22971 1.02481 0.98248 0.93421 1.23193 1.01408 0.92296 1.01696 0.93994 0.93976 0.89482 0.92517 0.92013 0.76678 0.90198 0.90850 0.92045 0.91394 0.92433 0.82972 0.89258 0.93800 0.79709 0.91576 0.87766 0.87541 0.87266 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.16 10.63 -35.23 -0.37 -4.53 16 3 C 0.11 0.95 5.76 37.16 0.21 1.17 16 4 C -0.17 -1.76 2.16 -155.66 -0.34 -2.10 16 5 C 0.56 7.43 7.01 -10.98 -0.08 7.35 16 6 O -0.53 -8.96 16.70 5.56 0.09 -8.86 16 7 N -0.73 -8.32 4.99 -60.30 -0.30 -8.62 16 8 C 0.12 1.35 5.32 -4.05 -0.02 1.33 16 9 C 0.07 0.80 2.81 -67.71 -0.19 0.61 16 10 H 0.05 0.48 7.80 -51.93 -0.40 0.07 16 11 C -0.14 -1.41 9.42 37.16 0.35 -1.06 16 12 N -0.66 -9.62 5.93 -107.99 -0.64 -10.26 16 13 C 0.05 0.72 5.96 -4.98 -0.03 0.69 16 14 C 0.45 9.77 7.82 -10.99 -0.09 9.69 16 15 O -0.56 -14.68 15.78 5.54 0.09 -14.59 16 16 N -0.59 -13.58 5.09 -10.96 -0.06 -13.63 16 17 C -0.31 -8.46 10.16 -14.93 -0.15 -8.62 16 18 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.33 13.96 55.50 0.77 -24.56 16 21 Si 0.88 18.88 27.74 -169.99 -4.71 14.17 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.25 6.52 56.52 0.37 -4.89 16 25 C -0.13 -1.29 9.78 -26.70 -0.26 -1.55 16 26 C -0.15 -1.32 9.93 -26.70 -0.27 -1.59 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.40 4.04 7.37 -40.82 -0.30 3.74 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.35 5.24 6.41 -39.29 -0.25 4.99 16 39 H 0.09 1.26 7.44 -51.93 -0.39 0.87 16 40 H 0.04 0.57 8.06 -51.92 -0.42 0.15 16 41 H 0.37 7.45 5.76 -40.82 -0.24 7.21 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.11 1.14 8.00 -51.93 -0.42 0.73 16 45 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -35.00 385.81 -6.58 -41.58 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -7.43 Total: 15.21 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 0.16 Total: 8.28 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.22 Total: -57.07 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.19 Total: -27.98 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.00 -6.58 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491524555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.015 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds