Wall clock time and date at job start Fri Apr 10 2020 18:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99807 * 2 1 4 4 C 1.52997 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.50707 * 115.54902 * 65.13390 * 4 3 2 6 6 O 1.21275 * 119.99801 * 245.46201 * 5 4 3 7 7 N 1.34778 * 119.99874 * 65.46443 * 5 4 3 8 8 C 1.46496 * 119.99948 * 185.01466 * 7 5 4 9 9 C 1.52996 * 109.47266 * 179.97438 * 8 7 5 10 10 H 1.08995 * 109.47128 * 294.99906 * 9 8 7 11 11 C 1.53005 * 109.47359 * 175.00055 * 9 8 7 12 12 N 1.46899 * 109.47017 * 54.99857 * 9 8 7 13 13 C 1.46900 * 110.99973 * 204.99840 * 12 9 8 14 14 C 1.50700 * 109.47423 * 179.97438 * 13 12 9 15 15 O 1.21294 * 119.99500 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00205 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99586 * 179.97438 * 16 14 13 18 18 H 1.07991 * 120.00579 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99489 * 180.02562 * 17 16 14 20 20 N 1.31408 * 119.99626 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00137 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.46787 * 89.99961 * 21 19 17 23 23 H 1.48499 * 109.47013 * 209.99710 * 21 19 17 24 24 H 1.48498 * 109.47348 * 330.00143 * 21 19 17 25 25 C 1.52997 * 117.50141 * 279.46244 * 4 3 2 26 26 C 1.52999 * 117.50427 * 210.80266 * 4 3 2 27 27 H 1.08997 * 109.47399 * 59.99617 * 1 2 3 28 28 H 1.09001 * 109.47154 * 299.99399 * 1 2 3 29 29 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47423 * 300.00379 * 3 2 1 31 31 H 1.09002 * 109.46689 * 60.00543 * 3 2 1 32 32 H 0.97000 * 120.00149 * 5.01101 * 7 5 4 33 33 H 1.09002 * 109.47011 * 299.99960 * 8 7 5 34 34 H 1.09002 * 109.47376 * 59.99298 * 8 7 5 35 35 H 1.08998 * 109.47095 * 180.02562 * 11 9 8 36 36 H 1.09003 * 109.46678 * 299.99808 * 11 9 8 37 37 H 1.08997 * 109.46952 * 59.99392 * 11 9 8 38 38 H 1.00898 * 111.00071 * 328.95696 * 12 9 8 39 39 H 1.08998 * 109.47491 * 300.00168 * 13 12 9 40 40 H 1.09010 * 109.46688 * 60.00197 * 13 12 9 41 41 H 0.96994 * 119.99957 * 0.02562 * 16 14 13 42 42 H 0.97000 * 119.99832 * 179.97438 * 20 19 17 43 43 H 1.09000 * 117.50357 * 0.02562 * 25 4 3 44 44 H 1.09007 * 117.50162 * 145.02115 * 25 4 3 45 45 H 1.08997 * 117.50163 * 214.98309 * 26 4 3 46 46 H 1.09006 * 117.49700 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1387 0.5632 -1.2326 6 8 4.7113 -0.5031 -1.1561 7 7 4.0419 1.1924 -2.4206 8 6 4.5304 0.5392 -3.6374 9 6 4.3026 1.4605 -4.8375 10 1 3.2324 1.5966 -4.9930 11 6 4.9239 0.8334 -6.0872 12 7 4.9296 2.7638 -4.5802 13 6 4.2778 3.8247 -5.3598 14 6 4.9460 5.1439 -5.0700 15 8 5.8743 5.1953 -4.2909 16 7 4.5129 6.2665 -5.6771 17 6 5.1205 7.4668 -5.4129 18 1 5.9465 7.5127 -4.7187 19 6 4.6736 8.6242 -6.0385 20 7 5.2563 9.7746 -5.7857 21 14 3.2445 8.5450 -7.2388 22 1 1.9696 8.7467 -6.5044 23 1 3.3991 9.6086 -8.2635 24 1 3.2285 7.2167 -7.9026 25 6 4.2215 0.9067 1.3396 26 6 4.3315 2.2910 0.6957 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6885 1.8464 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 3.6487 2.0778 -2.4698 33 1 5.5956 0.3313 -3.5356 34 1 3.9908 -0.3955 -3.7898 35 1 4.7620 1.4900 -6.9420 36 1 5.9942 0.6974 -5.9316 37 1 4.4587 -0.1336 -6.2780 38 1 4.9203 2.9814 -3.5950 39 1 4.3635 3.5993 -6.4228 40 1 3.2246 3.8830 -5.0845 41 1 3.7708 6.2253 -6.3003 42 1 4.9446 10.5825 -6.2227 43 1 3.5864 0.8095 2.2201 44 1 5.1095 0.2746 1.3285 45 1 5.2916 2.5691 0.2612 46 1 3.7686 3.1053 1.1522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491524555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:11 Heat of formation + Delta-G solvation = -112.915774 kcal Electronic energy + Delta-G solvation = -26342.573018 eV Core-core repulsion = 22460.363691 eV Total energy + Delta-G solvation = -3882.209327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35791 -40.34022 -39.07204 -38.24206 -37.14278 -36.00903 -34.98764 -33.73475 -32.12131 -29.36092 -28.28819 -27.68910 -26.48173 -25.52564 -23.91745 -23.37013 -21.67618 -21.30524 -20.72793 -20.23029 -18.50597 -17.79523 -17.33680 -17.15271 -17.02287 -16.97927 -16.59829 -16.39736 -16.31413 -15.61396 -15.45495 -15.31513 -14.89349 -14.62986 -14.42417 -14.21871 -13.67030 -13.60736 -13.41214 -13.35663 -13.23467 -12.97153 -12.82623 -12.59304 -12.54395 -12.39791 -12.36726 -11.97488 -11.90458 -11.67498 -11.49489 -11.31736 -10.92053 -10.60978 -10.42187 -10.23619 -10.20668 -9.37943 -8.39856 -6.00833 1.31945 1.36852 1.46285 1.47999 1.96838 2.01023 2.24531 2.36471 2.68907 3.03146 3.16973 3.34699 3.56941 3.65343 3.72179 3.85494 3.96278 4.10719 4.18616 4.33289 4.34435 4.42390 4.45410 4.52784 4.56611 4.59218 4.60194 4.68546 4.72696 4.84109 4.85666 4.92448 4.92957 5.04391 5.13008 5.27939 5.45303 5.54253 5.90910 6.03680 6.17006 6.32087 6.37737 6.61032 6.89832 7.11668 7.41432 7.98140 8.77820 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.002955 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.326784 B = 9473.158374 C =10030.583744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.106 3.894 4 C -0.178 4.178 5 C 0.554 3.446 6 O -0.577 6.577 7 N -0.719 5.719 8 C 0.122 3.878 9 C 0.082 3.918 10 H 0.075 0.925 11 C -0.138 4.138 12 N -0.684 5.684 13 C 0.061 3.939 14 C 0.448 3.552 15 O -0.614 6.614 16 N -0.590 5.590 17 C -0.328 4.328 18 H 0.055 0.945 19 C -0.015 4.015 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.255 1.255 23 H -0.278 1.278 24 H -0.230 1.230 25 C -0.138 4.138 26 C -0.135 4.135 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.407 0.593 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.343 0.657 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.157 -18.655 6.062 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.029 3.971 4 C -0.181 4.181 5 C 0.341 3.659 6 O -0.456 6.456 7 N -0.371 5.371 8 C -0.002 4.002 9 C -0.028 4.028 10 H 0.092 0.908 11 C -0.196 4.196 12 N -0.320 5.320 13 C -0.072 4.072 14 C 0.236 3.764 15 O -0.498 6.498 16 N -0.231 5.231 17 C -0.457 4.457 18 H 0.073 0.927 19 C -0.214 4.214 20 N -0.576 5.576 21 Si 0.785 3.215 22 H -0.179 1.179 23 H -0.204 1.204 24 H -0.153 1.153 25 C -0.176 4.176 26 C -0.172 4.172 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.243 0.757 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.226 0.774 42 H 0.088 0.912 43 H 0.142 0.858 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.510 -19.447 6.123 24.458 hybrid contribution -1.211 1.267 -0.181 1.762 sum -14.721 -18.180 5.941 24.135 Atomic orbital electron populations 1.22925 0.79221 1.03722 1.01144 1.87936 1.21529 1.28318 1.95634 1.21975 0.87630 0.84923 1.02562 1.21414 0.95196 1.08264 0.93236 1.19800 0.77878 0.83932 0.84276 1.90657 1.44502 1.24047 1.86393 1.45921 1.62936 1.21286 1.06947 1.21576 0.99888 0.96128 0.82620 1.21836 0.98044 0.87863 0.95032 0.90768 1.21760 1.01120 1.00887 0.95835 1.60101 1.57714 1.01143 1.13004 1.21729 0.96609 0.87484 1.01332 1.20977 0.85877 0.86216 0.83338 1.90560 1.32521 1.86950 1.39783 1.42015 1.32733 1.06582 1.41806 1.18999 1.15851 0.84838 1.26029 0.92726 1.26125 1.01624 0.93703 0.99946 1.69808 1.43347 0.99827 1.44637 0.85363 0.77837 0.80209 0.78087 1.17944 1.20359 1.15349 1.23018 1.02120 0.98498 0.93928 1.23236 1.00807 0.92511 1.00690 0.93155 0.92499 0.89019 0.91514 0.89788 0.75704 0.92351 0.90031 0.91682 0.93049 0.90165 0.83655 0.86779 0.89785 0.77435 0.91188 0.85823 0.89467 0.88613 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.36 10.63 -148.98 -1.58 -9.94 16 3 C 0.11 1.70 5.76 71.98 0.41 2.11 16 4 C -0.18 -3.60 2.16 -52.93 -0.11 -3.71 16 5 C 0.55 14.68 7.01 87.66 0.61 15.30 16 6 O -0.58 -20.10 16.70 -3.02 -0.05 -20.15 16 7 N -0.72 -15.77 4.99 -463.07 -2.31 -18.08 16 8 C 0.12 2.63 5.32 86.38 0.46 3.09 16 9 C 0.08 1.56 2.81 44.92 0.13 1.69 16 10 H 0.07 1.11 7.80 -2.39 -0.02 1.09 16 11 C -0.14 -2.43 9.42 71.98 0.68 -1.76 16 12 N -0.68 -18.44 5.93 -495.57 -2.94 -21.38 16 13 C 0.06 1.66 5.96 85.56 0.51 2.17 16 14 C 0.45 19.13 7.82 87.66 0.69 19.81 16 15 O -0.61 -32.86 15.78 -3.07 -0.05 -32.91 16 16 N -0.59 -26.49 5.09 -306.99 -1.56 -28.05 16 17 C -0.33 -18.71 10.16 84.04 0.85 -17.85 16 18 H 0.05 3.74 7.39 -2.92 -0.02 3.72 16 19 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 20 N -0.94 -55.53 13.96 21.66 0.30 -55.23 16 21 Si 0.97 37.35 27.74 68.60 1.90 39.26 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 25 C -0.14 -2.61 9.78 30.62 0.30 -2.31 16 26 C -0.14 -2.28 9.93 30.62 0.30 -1.98 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 32 H 0.41 7.56 7.37 -92.71 -0.68 6.88 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.34 9.92 6.41 -89.70 -0.58 9.34 16 39 H 0.11 2.65 7.44 -2.39 -0.02 2.64 16 40 H 0.08 1.71 8.06 -2.38 -0.02 1.69 16 41 H 0.39 14.27 5.76 -92.71 -0.53 13.74 16 42 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.09 1.97 8.00 -2.38 -0.02 1.95 16 45 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -82.83 385.81 -0.59 -83.42 By element: Atomic # 1 Polarization: 46.16 SS G_CDS: -0.85 Total: 45.31 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.55 Total: 17.75 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -6.51 Total: -122.74 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -1.68 Total: -63.00 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 1.90 Total: 39.26 kcal Total: -82.83 -0.59 -83.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491524555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.496 kcal (2) G-P(sol) polarization free energy of solvation -82.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds