Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47011 * 2 1 4 4 C 1.52997 * 109.46921 * 120.00407 * 2 1 3 5 5 N 1.46496 * 109.47194 * 175.00179 * 4 2 1 6 6 C 1.34779 * 120.00054 * 179.97438 * 5 4 2 7 7 O 1.21273 * 120.00093 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99767 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.46735 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.87086 * 53.99464 * 10 9 8 12 12 C 1.54094 * 109.88146 * 175.00362 * 10 9 8 13 13 C 1.54808 * 104.19256 * 121.45338 * 12 10 9 14 14 C 1.54998 * 102.09117 * 20.88148 * 13 12 10 15 15 H 1.09005 * 110.62027 * 81.47743 * 14 13 12 16 16 C 1.50700 * 110.62017 * 204.47576 * 14 13 12 17 17 N 1.34770 * 120.00026 * 295.00090 * 16 14 13 18 18 O 1.21285 * 119.99834 * 114.99798 * 16 14 13 19 19 O 1.43747 * 109.88055 * 292.83555 * 10 9 8 20 20 N 1.46496 * 109.47348 * 240.00393 * 2 1 3 21 21 C 1.36941 * 120.00198 * 84.99697 * 20 2 1 22 22 H 1.07991 * 119.99826 * 0.02562 * 21 20 2 23 23 C 1.38810 * 119.99828 * 180.02562 * 21 20 2 24 24 N 1.31623 * 120.00515 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99882 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47137 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47137 * 120.00227 * 25 23 21 28 28 H 1.48497 * 109.47398 * 240.00333 * 25 23 21 29 29 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47312 * 299.99972 * 1 2 3 31 31 H 1.09004 * 109.46964 * 59.99770 * 1 2 3 32 32 H 1.08998 * 109.47624 * 54.99676 * 4 2 1 33 33 H 1.09002 * 109.47045 * 295.00052 * 4 2 1 34 34 H 0.97005 * 120.00266 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.46797 * 60.00350 * 8 6 5 36 36 H 1.08992 * 109.47518 * 300.00347 * 8 6 5 37 37 H 1.09002 * 109.47398 * 300.00410 * 9 8 6 38 38 H 1.09001 * 109.47194 * 60.00591 * 9 8 6 39 39 H 1.09005 * 110.48825 * 240.12897 * 12 10 9 40 40 H 1.09002 * 110.49084 * 2.77415 * 12 10 9 41 41 H 1.08998 * 110.90817 * 139.07795 * 13 12 10 42 42 H 1.08992 * 110.91004 * 262.65121 * 13 12 10 43 43 H 0.97004 * 120.00397 * 359.97438 * 17 16 14 44 44 H 0.96996 * 120.00493 * 180.02562 * 17 16 14 45 45 H 0.97007 * 119.99926 * 265.00312 * 20 2 1 46 46 H 0.96994 * 120.00369 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1730 -1.4284 2.1912 7 8 3.5699 -1.8835 3.1398 8 6 5.6749 -1.5370 2.1306 9 6 6.1848 -2.2583 3.3798 10 6 7.7096 -2.3680 3.3187 11 1 8.1463 -1.3810 3.1657 12 6 8.2439 -2.9801 4.6280 13 6 9.0027 -4.2499 4.1716 14 6 9.2845 -3.9408 2.6791 15 1 10.1601 -3.2993 2.5787 16 6 9.4674 -5.2166 1.8982 17 7 10.5139 -6.0238 2.1616 18 8 8.6726 -5.5170 1.0326 19 8 8.0939 -3.2470 2.2482 20 7 2.0184 -0.6905 -1.1962 21 6 2.1492 -0.0073 -2.3758 22 1 1.8927 1.0406 -2.4241 23 6 2.6114 -0.6618 -3.5093 24 7 2.9236 -1.9391 -3.4505 25 14 2.7905 0.2703 -5.1182 26 1 2.3776 1.6830 -4.9204 27 1 4.2074 0.2264 -5.5606 28 1 1.9293 -0.3574 -6.1524 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1369 34 1 3.9824 -0.4628 0.4316 35 1 6.1097 -0.5386 2.0840 36 1 5.9630 -2.1005 1.2432 37 1 5.8967 -1.6952 4.2676 38 1 5.7499 -3.2567 3.4259 39 1 8.9237 -2.2870 5.1237 40 1 7.4192 -3.2456 5.2895 41 1 9.9332 -4.3677 4.7268 42 1 8.3758 -5.1356 4.2742 43 1 11.1498 -5.7835 2.8537 44 1 10.6318 -6.8449 1.6588 45 1 2.2491 -1.6317 -1.1527 46 1 3.2462 -2.3965 -4.2426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491530406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = -156.243778 kcal Electronic energy + Delta-G solvation = -26055.236797 eV Core-core repulsion = 22171.148627 eV Total energy + Delta-G solvation = -3884.088170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32438 -40.67885 -39.44759 -37.93699 -35.17413 -34.92726 -34.49141 -33.58323 -32.91689 -30.68905 -29.97213 -27.45210 -25.89972 -25.30817 -23.34219 -21.87846 -21.72057 -21.55023 -21.03377 -19.34530 -18.65979 -18.04838 -17.86919 -17.34238 -17.14074 -16.87571 -16.65813 -16.14287 -15.71665 -15.57263 -15.51341 -15.25639 -14.61259 -14.43056 -14.27415 -14.15540 -13.78404 -13.66095 -13.31140 -13.08275 -13.02127 -12.84559 -12.81663 -12.62039 -12.49879 -12.13487 -12.05829 -11.90610 -11.71219 -11.65055 -11.56789 -11.05745 -11.01759 -10.80070 -10.73694 -10.59418 -9.98782 -9.03447 -7.91615 -5.21500 1.49035 1.49292 1.53379 1.59268 1.68747 2.18900 2.35026 2.57661 3.07772 3.42623 3.53649 3.72272 3.85064 3.89166 3.92464 3.98633 4.01139 4.13582 4.21461 4.33382 4.39285 4.44651 4.61069 4.63978 4.71416 4.74274 4.77838 4.88370 4.90178 5.05112 5.05365 5.10498 5.15918 5.25079 5.31243 5.43813 5.55915 5.62073 5.80300 5.96269 6.28295 6.45303 6.62782 7.28293 7.32206 7.35245 8.08232 8.32233 9.31344 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.002944 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.415345 B = 9507.557610 C =11259.799153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.062 0.938 4 C 0.123 3.877 5 N -0.715 5.715 6 C 0.507 3.493 7 O -0.589 6.589 8 C -0.133 4.133 9 C -0.094 4.094 10 C 0.069 3.931 11 H 0.095 0.905 12 C -0.145 4.145 13 C -0.135 4.135 14 C 0.050 3.950 15 H 0.131 0.869 16 C 0.512 3.488 17 N -0.826 5.826 18 O -0.591 6.591 19 O -0.384 6.384 20 N -0.734 5.734 21 C -0.232 4.232 22 H 0.081 0.919 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.970 3.030 26 H -0.263 1.263 27 H -0.296 1.296 28 H -0.300 1.300 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.410 0.590 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.064 0.936 43 H 0.422 0.578 44 H 0.410 0.590 45 H 0.371 0.629 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.878 -0.405 21.125 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.050 3.950 3 H 0.080 0.920 4 C -0.002 4.002 5 N -0.366 5.366 6 C 0.295 3.705 7 O -0.471 6.471 8 C -0.173 4.173 9 C -0.132 4.132 10 C 0.012 3.988 11 H 0.113 0.887 12 C -0.182 4.182 13 C -0.173 4.173 14 C -0.010 4.010 15 H 0.148 0.852 16 C 0.297 3.703 17 N -0.393 5.393 18 O -0.470 6.470 19 O -0.304 6.304 20 N -0.374 5.374 21 C -0.364 4.364 22 H 0.099 0.901 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.800 3.200 26 H -0.187 1.187 27 H -0.224 1.224 28 H -0.228 1.228 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.246 0.754 35 H 0.138 0.862 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.149 0.851 42 H 0.083 0.917 43 H 0.254 0.746 44 H 0.242 0.758 45 H 0.202 0.798 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.723 -0.587 20.975 27.466 hybrid contribution 0.300 -0.500 -1.639 1.739 sum 18.023 -1.088 19.336 26.456 Atomic orbital electron populations 1.22238 0.96776 1.01044 1.01455 1.20699 0.93622 0.95672 0.84966 0.91996 1.21554 0.80159 1.00076 0.98423 1.46075 1.08070 1.58906 1.23516 1.21243 0.91409 0.76368 0.81465 1.90612 1.71591 1.49751 1.35149 1.21647 0.89832 1.04348 1.01459 1.21494 0.94046 1.00491 0.97153 1.23071 0.94232 0.94542 0.86949 0.88694 1.23030 1.01376 0.97233 0.96567 1.23138 1.03327 0.98745 0.92056 1.23284 0.91744 0.91604 0.94395 0.85195 1.20841 0.80889 0.85982 0.82582 1.43530 1.27765 1.25716 1.42267 1.90813 1.45722 1.75340 1.35125 1.89075 1.43514 1.57759 1.40026 1.42650 1.78323 1.10274 1.06190 1.19626 1.34577 0.94201 0.87997 0.90144 1.25527 1.03140 0.96702 1.01369 1.69845 1.52668 1.10316 1.29185 0.85121 0.76537 0.78318 0.80048 1.18693 1.22390 1.22751 0.94160 0.90649 0.93549 0.93766 0.89948 0.75436 0.86242 0.89843 0.88825 0.93434 0.86812 0.90002 0.85073 0.91735 0.74575 0.75849 0.79752 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.49 71.98 0.68 -4.66 16 2 C 0.16 6.05 3.05 44.99 0.14 6.19 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 C 0.12 4.36 5.23 86.38 0.45 4.81 16 5 N -0.72 -25.39 5.39 -463.07 -2.49 -27.88 16 6 C 0.51 17.75 7.83 87.66 0.69 18.44 16 7 O -0.59 -23.84 15.98 -3.01 -0.05 -23.89 16 8 C -0.13 -3.72 5.62 29.85 0.17 -3.55 16 9 C -0.09 -2.29 3.99 30.59 0.12 -2.17 16 10 C 0.07 1.28 3.41 30.96 0.11 1.38 16 11 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 12 C -0.14 -1.57 6.64 31.58 0.21 -1.36 16 13 C -0.13 -1.35 6.57 31.89 0.21 -1.14 16 14 C 0.05 0.83 3.76 30.53 0.11 0.95 16 15 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 16 C 0.51 11.18 7.48 87.66 0.66 11.83 16 17 N -0.83 -8.16 8.86 -173.54 -1.54 -9.70 16 18 O -0.59 -21.60 17.40 15.19 0.26 -21.34 16 19 O -0.38 -10.10 10.12 -130.75 -1.32 -11.43 16 20 N -0.73 -35.93 4.56 -322.95 -1.47 -37.40 16 21 C -0.23 -12.47 9.93 84.03 0.83 -11.64 16 22 H 0.08 4.11 7.83 -2.92 -0.02 4.09 16 23 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 24 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 25 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.41 14.80 8.14 -92.70 -0.75 14.04 16 35 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.08 2.71 7.91 -2.39 -0.02 2.69 16 37 H 0.09 2.02 8.10 -2.39 -0.02 2.00 16 38 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.08 0.99 7.70 -2.39 -0.02 0.97 16 41 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.06 0.90 8.05 -2.39 -0.02 0.88 16 43 H 0.42 0.36 8.83 -92.71 -0.82 -0.46 16 44 H 0.41 3.79 8.93 -92.71 -0.83 2.96 16 45 H 0.37 20.30 7.80 -92.70 -0.72 19.57 16 46 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -84.84 383.93 -1.56 -86.40 By element: Atomic # 1 Polarization: 43.76 SS G_CDS: -2.11 Total: 41.65 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 4.84 Total: 15.26 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -5.22 Total: -134.91 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: -1.11 Total: -56.66 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -84.84 -1.56 -86.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491530406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.841 kcal (2) G-P(sol) polarization free energy of solvation -84.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds