Wall clock time and date at job start Fri Apr 10 2020 18:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.99054 * 2 1 4 4 C 1.54100 * 109.87612 * 238.91503 * 2 1 3 5 5 C 1.54810 * 104.19043 * 238.54399 * 4 2 1 6 6 H 1.08997 * 110.90513 * 97.35240 * 5 4 2 7 7 C 1.50698 * 110.90889 * 220.92684 * 5 4 2 8 8 O 1.21280 * 120.00073 * 357.07291 * 7 5 4 9 9 N 1.34784 * 119.99671 * 177.06980 * 7 5 4 10 10 C 1.46498 * 119.99908 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47216 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47073 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99788 * 293.95231 * 12 11 10 14 14 C 1.46901 * 110.99790 * 170.00177 * 12 11 10 15 15 C 1.50701 * 109.46921 * 189.99765 * 14 12 11 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 12 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 12 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47117 * 59.99412 * 22 20 18 24 24 H 1.48498 * 109.47600 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47088 * 299.99811 * 22 20 18 26 26 C 1.54999 * 102.12270 * 339.14131 * 5 4 2 27 27 O 1.43739 * 109.87534 * 121.08954 * 2 1 3 28 28 H 1.09004 * 109.47106 * 181.08147 * 1 2 3 29 29 H 1.08996 * 109.47210 * 301.08429 * 1 2 3 30 30 H 1.09005 * 109.47017 * 61.08507 * 1 2 3 31 31 H 1.09006 * 110.48602 * 119.87331 * 4 2 1 32 32 H 1.08999 * 110.49149 * 357.22615 * 4 2 1 33 33 H 0.97002 * 120.00108 * 0.02562 * 9 7 5 34 34 H 1.09003 * 109.46879 * 60.00413 * 10 9 7 35 35 H 1.09002 * 109.47519 * 300.00725 * 10 9 7 36 36 H 1.09003 * 109.47179 * 60.00205 * 11 10 9 37 37 H 1.08993 * 109.47094 * 300.00365 * 11 10 9 38 38 H 1.09001 * 109.47121 * 296.04690 * 13 12 11 39 39 H 1.09005 * 109.47342 * 56.04784 * 13 12 11 40 40 H 1.08999 * 109.46894 * 176.04703 * 13 12 11 41 41 H 1.09002 * 109.47401 * 69.99793 * 14 12 11 42 42 H 1.09001 * 109.46874 * 309.99805 * 14 12 11 43 43 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 45 45 H 1.09006 * 110.61617 * 155.50333 * 26 5 4 46 46 H 1.08999 * 110.61987 * 278.50085 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0242 0.0000 4 6 2.0539 -0.7482 -1.2411 5 6 2.9195 -1.8915 -0.6577 6 1 2.3541 -2.8221 -0.6105 7 6 4.1827 -2.0725 -1.4594 8 8 4.3739 -1.3995 -2.4500 9 7 5.0999 -2.9823 -1.0753 10 6 6.3277 -3.1588 -1.8550 11 6 7.1904 -4.2447 -1.2090 12 7 8.4218 -4.4211 -1.9904 13 6 8.1257 -4.9581 -3.3254 14 6 9.3787 -5.2787 -1.2785 15 6 10.7098 -5.2395 -1.9840 16 8 10.8478 -4.5633 -2.9815 17 7 11.7471 -5.9550 -1.5060 18 6 12.9582 -5.9189 -2.1475 19 1 13.0808 -5.3175 -3.0362 20 6 14.0275 -6.6569 -1.6551 21 7 13.8781 -7.3891 -0.5741 22 14 15.6779 -6.6073 -2.5288 23 1 16.1848 -5.2117 -2.5503 24 1 16.6454 -7.4738 -1.8089 25 1 15.5156 -7.0964 -3.9215 26 6 3.2380 -1.3651 0.7650 27 8 2.0187 -0.6980 1.1576 28 1 -0.3633 -1.0275 0.0194 29 1 -0.3633 0.5306 0.8801 30 1 -0.3633 0.4969 -0.8996 31 1 2.6620 -0.0859 -1.8574 32 1 1.2246 -1.1548 -1.8198 33 1 4.9468 -3.5209 -0.2832 34 1 6.8814 -2.2201 -1.8780 35 1 6.0726 -3.4551 -2.8724 36 1 6.6364 -5.1832 -1.1863 37 1 7.4455 -3.9487 -0.1915 38 1 7.6967 -5.9554 -3.2289 39 1 7.4148 -4.3041 -3.8306 40 1 9.0458 -5.0130 -3.9072 41 1 9.0063 -6.3030 -1.2619 42 1 9.4984 -4.9190 -0.2565 43 1 11.6368 -6.4954 -0.7081 44 1 14.6248 -7.9040 -0.2301 45 1 3.4582 -2.1923 1.4399 46 1 4.0688 -0.6602 0.7364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492314215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:24 Heat of formation + Delta-G solvation = -114.282359 kcal Electronic energy + Delta-G solvation = -25488.941572 eV Core-core repulsion = 21606.672986 eV Total energy + Delta-G solvation = -3882.268587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75504 -39.09235 -38.59545 -36.83327 -34.77452 -33.83139 -32.81271 -32.21891 -31.26537 -29.48261 -27.73311 -26.41126 -25.43064 -24.29997 -23.16764 -21.59221 -21.30065 -20.26615 -19.19250 -17.98028 -17.86637 -16.76303 -16.30242 -16.09261 -15.82182 -15.67269 -15.58983 -15.07040 -14.64009 -14.46128 -14.28154 -13.83501 -13.72824 -13.49824 -13.29850 -13.11574 -12.92383 -12.73014 -12.43140 -12.14442 -11.95942 -11.74764 -11.53802 -11.44197 -11.33200 -11.29189 -11.18753 -11.08420 -10.93862 -10.44746 -10.22755 -10.16675 -10.12846 -9.48412 -9.30640 -8.51337 -8.00817 -7.90958 -6.42909 -3.83788 2.29402 2.72994 3.19495 3.25336 3.29751 3.39601 3.88282 3.91189 4.02186 4.24491 4.27562 4.41351 4.52539 4.69791 4.72133 4.81493 4.92764 4.97099 5.08692 5.14705 5.19322 5.23138 5.26036 5.34224 5.46298 5.58044 5.59109 5.62056 5.65817 5.75090 5.79750 5.83380 5.89160 5.96782 6.14613 6.25392 6.42264 6.53716 7.12506 7.20037 7.28959 7.54067 7.90190 8.04792 8.60411 9.16884 9.52721 10.04642 10.74697 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.042343 B = 0.001818 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.107607 B =15398.131187 C =15703.991693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.138 4.138 5 C -0.146 4.146 6 H 0.112 0.888 7 C 0.522 3.478 8 O -0.532 6.532 9 N -0.726 5.726 10 C 0.120 3.880 11 C 0.044 3.956 12 N -0.515 5.515 13 C 0.017 3.983 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.577 6.577 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.061 3.939 27 O -0.370 6.370 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.400 0.600 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.016 0.984 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.101 0.899 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.954 7.366 4.980 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 H 0.089 0.911 4 C -0.176 4.176 5 C -0.168 4.168 6 H 0.130 0.870 7 C 0.308 3.692 8 O -0.408 6.408 9 N -0.378 5.378 10 C -0.003 4.003 11 C -0.085 4.085 12 N -0.239 5.239 13 C -0.130 4.130 14 C -0.084 4.084 15 C 0.228 3.772 16 O -0.461 6.461 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.017 4.017 27 O -0.290 6.290 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.234 0.766 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.435 8.645 3.817 26.198 hybrid contribution 0.487 -1.585 0.479 1.726 sum -23.947 7.060 4.297 25.333 Atomic orbital electron populations 1.21940 0.93476 1.02887 1.02526 1.22814 0.95329 0.96048 0.84543 0.91050 1.22986 0.99760 0.96734 0.98134 1.22909 0.95288 1.01984 0.96623 0.86987 1.20186 0.84269 0.79558 0.85231 1.90729 1.77919 1.45577 1.26601 1.45955 1.20683 1.40340 1.30869 1.21387 0.83761 1.00171 0.95030 1.22247 0.91162 0.96990 0.98088 1.61455 1.09575 1.49915 1.02969 1.22644 1.03490 0.96201 0.90702 1.21877 0.92985 0.95328 0.98212 1.19698 0.85318 0.84624 0.87517 1.90491 1.83672 1.44506 1.27391 1.41851 1.09581 1.41590 1.27009 1.19655 0.86424 1.26665 1.10170 0.87935 1.25255 0.99967 0.96241 0.96433 1.69604 1.33172 1.29583 1.21999 0.85913 0.80865 0.78313 0.79100 1.19883 1.20991 1.19925 1.23487 0.88438 0.96920 0.92817 1.88909 1.39271 1.67505 1.33271 0.91829 0.91849 0.91091 0.88538 0.89791 0.76627 0.90117 0.91055 0.94549 0.90230 0.96561 0.91924 0.88267 0.93337 0.89306 0.77504 0.91830 0.88115 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.36 37.16 0.35 -0.51 16 2 C 0.07 0.51 4.06 -26.16 -0.11 0.41 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.14 -1.05 6.04 -25.20 -0.15 -1.20 16 5 C -0.15 -1.06 3.51 -89.76 -0.32 -1.37 16 6 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 7 C 0.52 5.29 7.15 -10.98 -0.08 5.21 16 8 O -0.53 -7.67 15.47 5.56 0.09 -7.59 16 9 N -0.73 -6.25 5.54 -60.29 -0.33 -6.58 16 10 C 0.12 1.36 5.61 -4.04 -0.02 1.33 16 11 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 12 N -0.51 -8.21 4.50 -244.36 -1.10 -9.31 16 13 C 0.02 0.27 9.01 60.07 0.54 0.82 16 14 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 15 C 0.44 10.27 7.51 -10.98 -0.08 10.19 16 16 O -0.58 -15.34 13.89 5.55 0.08 -15.26 16 17 N -0.56 -14.07 5.29 -10.96 -0.06 -14.12 16 18 C -0.30 -8.27 9.68 -14.94 -0.14 -8.42 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 22 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.06 0.42 7.16 38.21 0.27 0.69 16 27 O -0.37 -3.24 11.19 -35.23 -0.39 -3.64 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.90 6.90 -51.93 -0.36 0.54 16 32 H 0.08 0.55 7.70 -51.93 -0.40 0.15 16 33 H 0.40 2.20 8.47 -40.82 -0.35 1.85 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 36 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 40 H 0.10 1.94 5.88 -51.93 -0.31 1.63 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 43 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -33.54 375.27 -7.62 -41.17 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.37 Total: 8.43 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 0.12 Total: 8.91 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.77 Total: -53.57 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.23 Total: -26.49 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.54 -7.62 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492314215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.117 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds