Wall clock time and date at job start Fri Apr 10 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.99054 * 2 1 4 4 C 1.54100 * 109.87612 * 238.91503 * 2 1 3 5 5 C 1.54810 * 104.19043 * 238.54399 * 4 2 1 6 6 H 1.08997 * 110.90513 * 97.35240 * 5 4 2 7 7 C 1.50698 * 110.90889 * 220.92684 * 5 4 2 8 8 O 1.21280 * 120.00073 * 357.07291 * 7 5 4 9 9 N 1.34784 * 119.99671 * 177.06980 * 7 5 4 10 10 C 1.46498 * 119.99908 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47216 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47073 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99788 * 293.95231 * 12 11 10 14 14 C 1.46901 * 110.99790 * 170.00177 * 12 11 10 15 15 C 1.50701 * 109.46921 * 189.99765 * 14 12 11 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 12 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 12 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47117 * 59.99412 * 22 20 18 24 24 H 1.48498 * 109.47600 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47088 * 299.99811 * 22 20 18 26 26 C 1.54999 * 102.12270 * 339.14131 * 5 4 2 27 27 O 1.43739 * 109.87534 * 121.08954 * 2 1 3 28 28 H 1.09004 * 109.47106 * 181.08147 * 1 2 3 29 29 H 1.08996 * 109.47210 * 301.08429 * 1 2 3 30 30 H 1.09005 * 109.47017 * 61.08507 * 1 2 3 31 31 H 1.09006 * 110.48602 * 119.87331 * 4 2 1 32 32 H 1.08999 * 110.49149 * 357.22615 * 4 2 1 33 33 H 0.97002 * 120.00108 * 0.02562 * 9 7 5 34 34 H 1.09003 * 109.46879 * 60.00413 * 10 9 7 35 35 H 1.09002 * 109.47519 * 300.00725 * 10 9 7 36 36 H 1.09003 * 109.47179 * 60.00205 * 11 10 9 37 37 H 1.08993 * 109.47094 * 300.00365 * 11 10 9 38 38 H 1.09001 * 109.47121 * 296.04690 * 13 12 11 39 39 H 1.09005 * 109.47342 * 56.04784 * 13 12 11 40 40 H 1.08999 * 109.46894 * 176.04703 * 13 12 11 41 41 H 1.09002 * 109.47401 * 69.99793 * 14 12 11 42 42 H 1.09001 * 109.46874 * 309.99805 * 14 12 11 43 43 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 45 45 H 1.09006 * 110.61617 * 155.50333 * 26 5 4 46 46 H 1.08999 * 110.61987 * 278.50085 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0242 0.0000 4 6 2.0539 -0.7482 -1.2411 5 6 2.9195 -1.8915 -0.6577 6 1 2.3541 -2.8221 -0.6105 7 6 4.1827 -2.0725 -1.4594 8 8 4.3739 -1.3995 -2.4500 9 7 5.0999 -2.9823 -1.0753 10 6 6.3277 -3.1588 -1.8550 11 6 7.1904 -4.2447 -1.2090 12 7 8.4218 -4.4211 -1.9904 13 6 8.1257 -4.9581 -3.3254 14 6 9.3787 -5.2787 -1.2785 15 6 10.7098 -5.2395 -1.9840 16 8 10.8478 -4.5633 -2.9815 17 7 11.7471 -5.9550 -1.5060 18 6 12.9582 -5.9189 -2.1475 19 1 13.0808 -5.3175 -3.0362 20 6 14.0275 -6.6569 -1.6551 21 7 13.8781 -7.3891 -0.5741 22 14 15.6779 -6.6073 -2.5288 23 1 16.1848 -5.2117 -2.5503 24 1 16.6454 -7.4738 -1.8089 25 1 15.5156 -7.0964 -3.9215 26 6 3.2380 -1.3651 0.7650 27 8 2.0187 -0.6980 1.1576 28 1 -0.3633 -1.0275 0.0194 29 1 -0.3633 0.5306 0.8801 30 1 -0.3633 0.4969 -0.8996 31 1 2.6620 -0.0859 -1.8574 32 1 1.2246 -1.1548 -1.8198 33 1 4.9468 -3.5209 -0.2832 34 1 6.8814 -2.2201 -1.8780 35 1 6.0726 -3.4551 -2.8724 36 1 6.6364 -5.1832 -1.1863 37 1 7.4455 -3.9487 -0.1915 38 1 7.6967 -5.9554 -3.2289 39 1 7.4148 -4.3041 -3.8306 40 1 9.0458 -5.0130 -3.9072 41 1 9.0063 -6.3030 -1.2619 42 1 9.4984 -4.9190 -0.2565 43 1 11.6368 -6.4954 -0.7081 44 1 14.6248 -7.9040 -0.2301 45 1 3.4582 -2.1923 1.4399 46 1 4.0688 -0.6602 0.7364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492314215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:23 Heat of formation + Delta-G solvation = -141.548745 kcal Electronic energy + Delta-G solvation = -25490.123931 eV Core-core repulsion = 21606.672986 eV Total energy + Delta-G solvation = -3883.450946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.47348 -40.39387 -39.69568 -38.16310 -36.03217 -35.54035 -33.44293 -33.26613 -32.79208 -30.55048 -29.07499 -27.15381 -26.80290 -25.59869 -24.06077 -22.35210 -22.18251 -21.10313 -20.90594 -19.84593 -18.71130 -17.74241 -17.51960 -17.11771 -16.66981 -16.59524 -16.45812 -16.32386 -16.12473 -15.81816 -15.45153 -15.14037 -14.99204 -14.64631 -14.29222 -14.18640 -13.76416 -13.46164 -13.43558 -13.32458 -13.03236 -12.97416 -12.92175 -12.58395 -12.55359 -12.41272 -12.30292 -12.15760 -12.09001 -11.84239 -11.76467 -11.44765 -11.00169 -10.74013 -10.28552 -10.16435 -9.98484 -9.23483 -8.45209 -5.93506 1.40289 1.42326 1.50429 1.52748 1.92452 2.07842 2.30702 2.78627 2.96469 3.21863 3.32223 3.43664 3.73367 3.77735 3.87828 3.99293 4.07093 4.15846 4.19932 4.26133 4.37140 4.44953 4.47057 4.53627 4.63049 4.64946 4.67174 4.69109 4.81564 4.86268 4.93814 4.96568 4.99410 5.10273 5.21831 5.30107 5.33564 5.42412 5.85576 5.87127 6.05169 6.17404 6.47486 6.62977 7.15064 7.16850 7.58860 8.15420 8.71793 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.042343 B = 0.001818 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.107607 B =15398.131187 C =15703.991693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 H 0.067 0.933 4 C -0.139 4.139 5 C -0.137 4.137 6 H 0.139 0.861 7 C 0.521 3.479 8 O -0.581 6.581 9 N -0.710 5.710 10 C 0.128 3.872 11 C 0.052 3.948 12 N -0.540 5.540 13 C 0.024 3.976 14 C 0.061 3.939 15 C 0.439 3.561 16 O -0.617 6.617 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.060 3.940 27 O -0.386 6.386 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.419 0.581 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.129 0.871 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.390 6.304 6.615 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.085 0.915 4 C -0.177 4.177 5 C -0.158 4.158 6 H 0.157 0.843 7 C 0.308 3.692 8 O -0.461 6.461 9 N -0.363 5.363 10 C 0.004 3.996 11 C -0.076 4.076 12 N -0.265 5.265 13 C -0.124 4.124 14 C -0.070 4.070 15 C 0.226 3.774 16 O -0.503 6.503 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.017 4.017 27 O -0.305 6.305 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.257 0.743 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.133 0.867 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.147 0.853 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.899 7.554 5.509 27.535 hybrid contribution 0.875 -1.200 -0.044 1.486 sum -25.024 6.354 5.465 26.390 Atomic orbital electron populations 1.21933 0.92163 1.03294 1.03114 1.22883 0.96393 0.95691 0.84046 0.91550 1.22967 0.99904 0.96675 0.98147 1.22911 0.93761 1.03002 0.96128 0.84336 1.20704 0.85002 0.78771 0.84699 1.90717 1.79001 1.47435 1.28922 1.45756 1.19372 1.40093 1.31043 1.21118 0.84511 0.99022 0.94973 1.22253 0.89302 0.97956 0.98065 1.61333 1.11774 1.49978 1.03403 1.22476 1.01591 0.97652 0.90700 1.21745 0.89670 0.97253 0.98358 1.20853 0.86955 0.82697 0.86867 1.90475 1.84785 1.45751 1.29255 1.41915 1.09518 1.42449 1.27285 1.19606 0.88401 1.27831 1.10470 0.90464 1.25986 1.02709 0.95446 0.97000 1.69659 1.34224 1.29612 1.22538 0.85020 0.77032 0.78343 0.78123 1.19904 1.19458 1.19813 1.23610 0.87594 0.97440 0.93024 1.88898 1.39881 1.67769 1.33959 0.91447 0.91902 0.89932 0.90800 0.88624 0.74330 0.92680 0.92387 0.91924 0.88188 0.94732 0.90719 0.92587 0.90892 0.86662 0.76939 0.91335 0.85333 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.36 71.98 0.67 -0.78 16 2 C 0.07 0.91 4.06 30.97 0.13 1.04 16 3 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.14 -1.98 6.04 31.58 0.19 -1.79 16 5 C -0.14 -1.69 3.51 -10.24 -0.04 -1.73 16 6 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 7 C 0.52 9.92 7.15 87.66 0.63 10.55 16 8 O -0.58 -16.95 15.47 -3.03 -0.05 -17.00 16 9 N -0.71 -10.57 5.54 -463.05 -2.57 -13.14 16 10 C 0.13 2.71 5.61 86.38 0.48 3.20 16 11 C 0.05 1.01 5.07 86.30 0.44 1.45 16 12 N -0.54 -16.35 4.50 -927.03 -4.17 -20.52 16 13 C 0.02 0.74 9.01 127.69 1.15 1.89 16 14 C 0.06 1.96 5.45 85.56 0.47 2.42 16 15 C 0.44 20.47 7.51 87.66 0.66 21.13 16 16 O -0.62 -33.87 13.89 -3.07 -0.04 -33.91 16 17 N -0.57 -28.97 5.29 -306.98 -1.62 -30.59 16 18 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 19 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 21 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 22 Si 0.99 42.84 29.55 68.60 2.03 44.86 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.06 0.69 7.16 72.67 0.52 1.21 16 27 O -0.39 -6.07 11.19 -148.98 -1.67 -7.74 16 28 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 1.41 6.90 -2.38 -0.02 1.40 16 32 H 0.10 1.11 7.70 -2.39 -0.02 1.09 16 33 H 0.42 3.02 8.47 -92.71 -0.79 2.24 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.40 6.47 -2.39 -0.02 1.38 16 36 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.10 1.58 7.93 -2.39 -0.02 1.56 16 38 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 2.09 6.30 -2.38 -0.02 2.08 16 40 H 0.06 2.25 5.88 -2.39 -0.01 2.24 16 41 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 42 H 0.12 3.13 7.93 -2.39 -0.02 3.12 16 43 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 44 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 45 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.06 0.78 8.04 -2.39 -0.02 0.76 16 Total: -1.00 -75.44 375.27 -1.75 -77.18 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.52 Total: 29.16 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.58 Total: 20.42 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -8.08 Total: -112.99 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -1.76 Total: -58.65 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -75.44 -1.75 -77.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492314215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.367 kcal (2) G-P(sol) polarization free energy of solvation -75.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds