Wall clock time and date at job start Fri Apr 10 2020 18:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.82279 * 2 1 4 4 C 1.54380 * 109.83150 * 239.11230 * 2 1 3 5 5 C 1.55307 * 102.25313 * 219.04048 * 4 2 1 6 6 H 1.09004 * 111.12115 * 276.17351 * 5 4 2 7 7 C 1.50700 * 111.12601 * 152.05322 * 5 4 2 8 8 O 1.21282 * 119.99813 * 359.97438 * 7 5 4 9 9 N 1.34773 * 120.00152 * 179.97438 * 7 5 4 10 10 C 1.46494 * 120.00013 * 179.97438 * 9 7 5 11 11 C 1.53011 * 109.46965 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46665 * 180.02562 * 11 10 9 13 13 C 1.46892 * 111.00460 * 293.94841 * 12 11 10 14 14 C 1.46902 * 110.99489 * 169.99695 * 12 11 10 15 15 C 1.50702 * 109.47027 * 189.99799 * 14 12 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 12 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 12 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46534 * 120.00189 * 22 20 18 25 25 H 1.48498 * 109.47283 * 240.00132 * 22 20 18 26 26 C 1.54945 * 100.94022 * 34.13016 * 5 4 2 27 27 O 1.43238 * 109.90479 * 120.93166 * 2 1 3 28 28 H 1.09001 * 109.47282 * 180.88652 * 1 2 3 29 29 H 1.08997 * 109.47571 * 300.88647 * 1 2 3 30 30 H 1.09000 * 109.47300 * 60.88500 * 1 2 3 31 31 H 1.09003 * 110.84541 * 100.84677 * 4 2 1 32 32 H 1.09000 * 110.84792 * 337.22839 * 4 2 1 33 33 H 0.97000 * 119.99908 * 0.02562 * 9 7 5 34 34 H 1.08999 * 109.47414 * 60.00360 * 10 9 7 35 35 H 1.09002 * 109.47401 * 299.99859 * 10 9 7 36 36 H 1.08993 * 109.46865 * 60.00082 * 11 10 9 37 37 H 1.09002 * 109.46559 * 299.99901 * 11 10 9 38 38 H 1.09001 * 109.47753 * 296.05285 * 13 12 11 39 39 H 1.09011 * 109.46904 * 56.05026 * 13 12 11 40 40 H 1.09001 * 109.47664 * 176.05137 * 13 12 11 41 41 H 1.09004 * 109.47131 * 70.00043 * 14 12 11 42 42 H 1.09000 * 109.47732 * 310.00154 * 14 12 11 43 43 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 44 44 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 45 45 H 1.09004 * 110.30360 * 82.47514 * 26 5 4 46 46 H 1.09002 * 110.30507 * 204.63696 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2744 -1.5198 -0.6784 6 1 4.1628 -0.8887 -0.6535 7 6 3.5301 -2.7811 -1.4624 8 8 2.8165 -3.0672 -2.4004 9 7 4.5517 -3.5912 -1.1212 10 6 4.7999 -4.8177 -1.8830 11 6 6.0075 -5.5489 -1.2930 12 7 6.2567 -6.7784 -2.0573 13 6 5.1539 -7.7344 -1.8909 14 6 7.5400 -7.3837 -1.6767 15 6 7.8779 -8.4922 -2.6402 16 8 7.1241 -8.7520 -3.5543 17 7 9.0207 -9.1907 -2.4898 18 6 9.3309 -10.1954 -3.3697 19 1 8.6596 -10.4267 -4.1835 20 6 10.5087 -10.9159 -3.2143 21 7 11.3252 -10.6347 -2.2237 22 14 10.9309 -12.2852 -4.4127 23 1 9.8554 -12.4019 -5.4300 24 1 12.2173 -11.9741 -5.0864 25 1 11.0561 -13.5678 -3.6748 26 6 2.7776 -1.8430 0.7532 27 8 2.0176 -0.6923 1.1553 28 1 -0.3634 -1.0275 0.0159 29 1 -0.3634 0.5275 0.8819 30 1 -0.3634 0.5000 -0.8978 31 1 2.3656 -0.0409 -2.0172 32 1 1.3018 -1.4348 -1.6305 33 1 5.1222 -3.3626 -0.3708 34 1 5.0011 -4.5645 -2.9239 35 1 3.9230 -5.4628 -1.8289 36 1 5.8060 -5.8022 -0.2522 37 1 6.8846 -4.9040 -1.3467 38 1 5.0975 -8.0464 -0.8481 39 1 4.2156 -7.2605 -2.1796 40 1 5.3300 -8.6057 -2.5217 41 1 7.4654 -7.7895 -0.6678 42 1 8.3225 -6.6255 -1.7063 43 1 9.6237 -8.9828 -1.7590 44 1 12.1472 -11.1380 -2.1150 45 1 2.1441 -2.7300 0.7424 46 1 3.6246 -1.9901 1.4233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492314216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:27 Heat of formation + Delta-G solvation = -114.818017 kcal Electronic energy + Delta-G solvation = -25497.387130 eV Core-core repulsion = 21615.095315 eV Total energy + Delta-G solvation = -3882.291814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76325 -39.12602 -38.60535 -36.83589 -34.77159 -33.83466 -32.82773 -32.20671 -31.26812 -29.49393 -27.73574 -26.56632 -25.46750 -24.31195 -23.06055 -21.51078 -21.30011 -20.30607 -19.19652 -17.87704 -17.85576 -17.21824 -16.47576 -16.05893 -15.83979 -15.70459 -15.20043 -14.77620 -14.64778 -14.49891 -14.22254 -14.02470 -13.76593 -13.55708 -13.39570 -13.06578 -12.98718 -12.84953 -12.31282 -12.15087 -11.90857 -11.73378 -11.54601 -11.47022 -11.41532 -11.31658 -11.26310 -11.08600 -10.97047 -10.35067 -10.24218 -10.16611 -10.01030 -9.50682 -9.31067 -8.51599 -8.01110 -7.91185 -6.43439 -3.84189 2.27542 2.71636 3.15346 3.26188 3.33110 3.34770 3.83799 3.87899 4.01167 4.23143 4.32769 4.34881 4.58418 4.62597 4.70563 4.79645 4.92049 4.97589 5.08414 5.13672 5.20925 5.22776 5.25339 5.33987 5.39485 5.53482 5.59276 5.65553 5.67627 5.79351 5.81570 5.83517 5.88954 5.96654 6.14045 6.25094 6.52097 6.53619 7.12060 7.19661 7.28809 7.54164 7.89462 8.04944 8.59980 9.16778 9.52498 10.04258 10.74365 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.049456 B = 0.001799 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.029149 B =15559.657738 C =15809.419026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.074 3.926 3 H 0.083 0.917 4 C -0.133 4.133 5 C -0.149 4.149 6 H 0.114 0.886 7 C 0.524 3.476 8 O -0.531 6.531 9 N -0.726 5.726 10 C 0.120 3.880 11 C 0.044 3.956 12 N -0.515 5.515 13 C 0.017 3.983 14 C 0.047 3.953 15 C 0.444 3.556 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.066 3.934 27 O -0.375 6.375 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.400 0.600 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.016 0.984 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.065 0.935 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 20.409 9.347 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.101 0.899 4 C -0.170 4.170 5 C -0.171 4.171 6 H 0.132 0.868 7 C 0.309 3.691 8 O -0.407 6.407 9 N -0.378 5.378 10 C -0.003 4.003 11 C -0.085 4.085 12 N -0.239 5.239 13 C -0.130 4.130 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.460 6.460 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.011 4.011 27 O -0.294 6.294 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.234 0.766 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.035 0.965 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.996 20.093 7.786 26.253 hybrid contribution 1.146 -0.739 0.964 1.670 sum -13.850 19.354 8.749 25.356 Atomic orbital electron populations 1.22143 0.94598 1.02881 1.02450 1.22797 0.94725 0.96334 0.84435 0.89909 1.23116 0.96657 0.99478 0.97793 1.23063 1.01496 0.95957 0.96587 0.86837 1.20098 0.80277 0.84281 0.84422 1.90740 1.47074 1.73891 1.29026 1.45958 1.32460 1.24352 1.35072 1.21389 0.98023 0.84507 0.96424 1.22248 0.97910 0.93121 0.95207 1.61451 1.02338 1.04925 1.55210 1.22643 0.93062 0.97843 0.99484 1.21879 0.91809 0.97588 0.97134 1.19701 0.83900 0.85407 0.88113 1.90492 1.50536 1.70139 1.34853 1.41867 1.18799 1.31200 1.28240 1.19756 1.04932 1.09482 1.08600 0.87822 1.25259 0.95825 0.99227 0.97648 1.69617 1.12336 1.41824 1.30580 0.85799 0.78494 0.80086 0.79966 1.19205 1.20752 1.20785 1.23276 0.95523 0.89670 0.92624 1.88453 1.70615 1.40179 1.30193 0.92023 0.91842 0.91268 0.89406 0.88710 0.76614 0.90114 0.91042 0.94522 0.90246 0.96548 0.91924 0.88270 0.93326 0.89306 0.77511 0.91934 0.91634 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.44 37.16 0.35 -0.68 16 2 C 0.07 0.52 4.15 -26.01 -0.11 0.41 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -0.98 5.70 -24.78 -0.14 -1.12 16 5 C -0.15 -1.06 3.49 -89.52 -0.31 -1.37 16 6 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 7 C 0.52 5.29 7.15 -10.99 -0.08 5.21 16 8 O -0.53 -7.66 15.71 5.56 0.09 -7.57 16 9 N -0.73 -6.23 5.56 -60.29 -0.33 -6.57 16 10 C 0.12 1.35 5.61 -4.04 -0.02 1.33 16 11 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 12 N -0.52 -8.20 4.50 -244.36 -1.10 -9.30 16 13 C 0.02 0.28 9.01 60.06 0.54 0.82 16 14 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 15 C 0.44 10.27 7.51 -10.98 -0.08 10.19 16 16 O -0.58 -15.33 13.89 5.55 0.08 -15.25 16 17 N -0.56 -14.08 5.29 -10.96 -0.06 -14.13 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.07 0.46 7.25 38.18 0.28 0.73 16 27 O -0.38 -3.24 11.02 -35.23 -0.39 -3.63 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.86 7.06 -51.93 -0.37 0.49 16 33 H 0.40 2.19 8.47 -40.82 -0.35 1.84 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 36 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.88 6.30 -51.92 -0.33 0.56 16 40 H 0.10 1.94 5.88 -51.93 -0.31 1.63 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 43 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.07 0.50 8.02 -51.93 -0.42 0.08 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -33.62 375.85 -7.62 -41.24 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.40 Total: 8.34 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 0.14 Total: 8.89 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.77 Total: -53.57 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.22 Total: -26.45 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.62 -7.62 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492314216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.579 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds