Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.82279 * 2 1 4 4 C 1.54380 * 109.83150 * 239.11230 * 2 1 3 5 5 C 1.55307 * 102.25313 * 219.04048 * 4 2 1 6 6 H 1.09004 * 111.12115 * 276.17351 * 5 4 2 7 7 C 1.50700 * 111.12601 * 152.05322 * 5 4 2 8 8 O 1.21282 * 119.99813 * 359.97438 * 7 5 4 9 9 N 1.34773 * 120.00152 * 179.97438 * 7 5 4 10 10 C 1.46494 * 120.00013 * 179.97438 * 9 7 5 11 11 C 1.53011 * 109.46965 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46665 * 180.02562 * 11 10 9 13 13 C 1.46892 * 111.00460 * 293.94841 * 12 11 10 14 14 C 1.46902 * 110.99489 * 169.99695 * 12 11 10 15 15 C 1.50702 * 109.47027 * 189.99799 * 14 12 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 12 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 12 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46534 * 120.00189 * 22 20 18 25 25 H 1.48498 * 109.47283 * 240.00132 * 22 20 18 26 26 C 1.54945 * 100.94022 * 34.13016 * 5 4 2 27 27 O 1.43238 * 109.90479 * 120.93166 * 2 1 3 28 28 H 1.09001 * 109.47282 * 180.88652 * 1 2 3 29 29 H 1.08997 * 109.47571 * 300.88647 * 1 2 3 30 30 H 1.09000 * 109.47300 * 60.88500 * 1 2 3 31 31 H 1.09003 * 110.84541 * 100.84677 * 4 2 1 32 32 H 1.09000 * 110.84792 * 337.22839 * 4 2 1 33 33 H 0.97000 * 119.99908 * 0.02562 * 9 7 5 34 34 H 1.08999 * 109.47414 * 60.00360 * 10 9 7 35 35 H 1.09002 * 109.47401 * 299.99859 * 10 9 7 36 36 H 1.08993 * 109.46865 * 60.00082 * 11 10 9 37 37 H 1.09002 * 109.46559 * 299.99901 * 11 10 9 38 38 H 1.09001 * 109.47753 * 296.05285 * 13 12 11 39 39 H 1.09011 * 109.46904 * 56.05026 * 13 12 11 40 40 H 1.09001 * 109.47664 * 176.05137 * 13 12 11 41 41 H 1.09004 * 109.47131 * 70.00043 * 14 12 11 42 42 H 1.09000 * 109.47732 * 310.00154 * 14 12 11 43 43 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 44 44 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 45 45 H 1.09004 * 110.30360 * 82.47514 * 26 5 4 46 46 H 1.09002 * 110.30507 * 204.63696 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2744 -1.5198 -0.6784 6 1 4.1628 -0.8887 -0.6535 7 6 3.5301 -2.7811 -1.4624 8 8 2.8165 -3.0672 -2.4004 9 7 4.5517 -3.5912 -1.1212 10 6 4.7999 -4.8177 -1.8830 11 6 6.0075 -5.5489 -1.2930 12 7 6.2567 -6.7784 -2.0573 13 6 5.1539 -7.7344 -1.8909 14 6 7.5400 -7.3837 -1.6767 15 6 7.8779 -8.4922 -2.6402 16 8 7.1241 -8.7520 -3.5543 17 7 9.0207 -9.1907 -2.4898 18 6 9.3309 -10.1954 -3.3697 19 1 8.6596 -10.4267 -4.1835 20 6 10.5087 -10.9159 -3.2143 21 7 11.3252 -10.6347 -2.2237 22 14 10.9309 -12.2852 -4.4127 23 1 9.8554 -12.4019 -5.4300 24 1 12.2173 -11.9741 -5.0864 25 1 11.0561 -13.5678 -3.6748 26 6 2.7776 -1.8430 0.7532 27 8 2.0176 -0.6923 1.1553 28 1 -0.3634 -1.0275 0.0159 29 1 -0.3634 0.5275 0.8819 30 1 -0.3634 0.5000 -0.8978 31 1 2.3656 -0.0409 -2.0172 32 1 1.3018 -1.4348 -1.6305 33 1 5.1222 -3.3626 -0.3708 34 1 5.0011 -4.5645 -2.9239 35 1 3.9230 -5.4628 -1.8289 36 1 5.8060 -5.8022 -0.2522 37 1 6.8846 -4.9040 -1.3467 38 1 5.0975 -8.0464 -0.8481 39 1 4.2156 -7.2605 -2.1796 40 1 5.3300 -8.6057 -2.5217 41 1 7.4654 -7.7895 -0.6678 42 1 8.3225 -6.6255 -1.7063 43 1 9.6237 -8.9828 -1.7590 44 1 12.1472 -11.1380 -2.1150 45 1 2.1441 -2.7300 0.7424 46 1 3.6246 -1.9901 1.4233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492314216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -142.167806 kcal Electronic energy + Delta-G solvation = -25498.573105 eV Core-core repulsion = 21615.095315 eV Total energy + Delta-G solvation = -3883.477790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46707 -40.39907 -39.72495 -38.16519 -36.03298 -35.53792 -33.45224 -33.26846 -32.77734 -30.56248 -29.07893 -27.21601 -26.92661 -25.63750 -23.97145 -22.34026 -22.04435 -21.16144 -20.91571 -19.84982 -18.52849 -17.91763 -17.66629 -17.33643 -16.86234 -16.60146 -16.39979 -16.25360 -15.90160 -15.55961 -15.40575 -15.05866 -14.85750 -14.68398 -14.59299 -14.22506 -13.77265 -13.54604 -13.51525 -13.44436 -13.04035 -12.95151 -12.82507 -12.57854 -12.56034 -12.39047 -12.26921 -12.14195 -12.08611 -12.00455 -11.78707 -11.46062 -11.02490 -10.56252 -10.28839 -10.16605 -9.98534 -9.23678 -8.45837 -5.93955 1.36807 1.42278 1.49337 1.56011 1.91974 2.07406 2.30419 2.75867 2.94555 3.21395 3.26427 3.43191 3.72632 3.80441 3.86293 4.02982 4.06614 4.12860 4.18704 4.25878 4.36997 4.44557 4.46597 4.53477 4.62973 4.64586 4.67721 4.68968 4.76270 4.85611 4.87975 4.95157 4.98575 5.15980 5.21594 5.29714 5.33942 5.42670 5.85457 5.98979 6.05075 6.17261 6.47305 6.62598 7.15018 7.16669 7.58628 8.15149 8.71701 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.049456 B = 0.001799 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.029149 B =15559.657738 C =15809.419026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.074 3.926 3 H 0.100 0.900 4 C -0.134 4.134 5 C -0.139 4.139 6 H 0.143 0.857 7 C 0.523 3.477 8 O -0.581 6.581 9 N -0.710 5.710 10 C 0.128 3.872 11 C 0.052 3.948 12 N -0.540 5.540 13 C 0.024 3.976 14 C 0.061 3.939 15 C 0.439 3.561 16 O -0.616 6.616 17 N -0.575 5.575 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.066 3.934 27 O -0.392 6.392 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.419 0.581 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.053 0.947 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.207 21.929 11.076 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.118 0.882 4 C -0.172 4.172 5 C -0.161 4.161 6 H 0.160 0.840 7 C 0.310 3.690 8 O -0.461 6.461 9 N -0.363 5.363 10 C 0.004 3.996 11 C -0.076 4.076 12 N -0.265 5.265 13 C -0.124 4.124 14 C -0.070 4.070 15 C 0.227 3.773 16 O -0.503 6.503 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.010 4.010 27 O -0.312 6.312 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.257 0.743 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.039 21.641 9.574 27.516 hybrid contribution 0.784 -1.166 0.424 1.468 sum -13.255 20.475 9.998 26.361 Atomic orbital electron populations 1.22156 0.94544 1.02239 1.03175 1.22904 0.94897 0.96881 0.83654 0.88222 1.23108 0.96389 0.99377 0.98375 1.23066 1.02452 0.94518 0.96024 0.83976 1.20642 0.79611 0.84944 0.83853 1.90727 1.48832 1.75116 1.31374 1.45762 1.32306 1.23125 1.35084 1.21118 0.97613 0.85289 0.95604 1.22254 0.98522 0.91076 0.95720 1.61329 1.01682 1.06159 1.57313 1.22473 0.93746 0.96614 0.99570 1.21747 0.93220 0.96054 0.96010 1.20855 0.82458 0.85756 0.88263 1.90477 1.51504 1.71378 1.36892 1.41927 1.19725 1.31348 1.28224 1.19675 1.05561 1.11572 1.09311 0.90490 1.25987 0.95203 1.00882 0.99113 1.69667 1.12580 1.42528 1.31316 0.84899 0.78104 0.77643 0.77855 1.20001 1.19641 1.19619 1.23368 0.95998 0.88783 0.92888 1.88438 1.70987 1.40693 1.31067 0.93334 0.91578 0.90109 0.88365 0.91013 0.74315 0.92622 0.92459 0.91918 0.88180 0.94733 0.90751 0.92588 0.90885 0.86639 0.76936 0.91345 0.92910 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.44 71.98 0.68 -1.26 16 2 C 0.07 0.90 4.15 31.06 0.13 1.03 16 3 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.13 -1.84 5.70 31.86 0.18 -1.66 16 5 C -0.14 -1.67 3.49 -10.08 -0.04 -1.70 16 6 H 0.14 0.93 8.14 -2.38 -0.02 0.91 16 7 C 0.52 9.90 7.15 87.66 0.63 10.53 16 8 O -0.58 -16.94 15.71 -3.04 -0.05 -16.99 16 9 N -0.71 -10.56 5.56 -463.06 -2.57 -13.13 16 10 C 0.13 2.72 5.61 86.38 0.48 3.20 16 11 C 0.05 1.01 5.07 86.31 0.44 1.45 16 12 N -0.54 -16.35 4.50 -927.03 -4.17 -20.52 16 13 C 0.02 0.75 9.01 127.69 1.15 1.90 16 14 C 0.06 1.95 5.45 85.56 0.47 2.42 16 15 C 0.44 20.49 7.51 87.66 0.66 21.15 16 16 O -0.62 -33.89 13.89 -3.07 -0.04 -33.94 16 17 N -0.57 -28.99 5.29 -306.98 -1.62 -30.61 16 18 C -0.33 -18.74 9.68 84.04 0.81 -17.92 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 21 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 22 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C 0.07 0.77 7.25 72.65 0.53 1.29 16 27 O -0.39 -6.03 11.02 -148.98 -1.64 -7.67 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.33 7.06 -2.39 -0.02 1.31 16 33 H 0.42 3.01 8.47 -92.71 -0.79 2.23 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.39 6.47 -2.39 -0.02 1.37 16 36 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.10 1.58 7.93 -2.39 -0.02 1.57 16 38 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 2.10 6.30 -2.38 -0.02 2.08 16 40 H 0.06 2.25 5.88 -2.39 -0.01 2.24 16 41 H 0.07 2.03 8.12 -2.38 -0.02 2.02 16 42 H 0.12 3.14 7.93 -2.39 -0.02 3.12 16 43 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 44 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 45 H 0.05 0.74 8.02 -2.38 -0.02 0.72 16 46 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -75.77 375.85 -1.72 -77.50 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.52 Total: 28.98 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 6.59 Total: 20.25 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -8.08 Total: -113.02 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -1.73 Total: -58.60 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -75.77 -1.72 -77.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492314216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.672 kcal (2) G-P(sol) polarization free energy of solvation -75.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds